BAC Information

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BAC

Clone NameB6Ng01-299J14
Chromosome2 (Build37)
Map Location 127,951,269 - 128,082,853
singlet/doubletdoublet
Overlap geneBcl2l11, LOC100043424
Upstream geneNcaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
Downstream geneLOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299J14.bB6Ng01-299J14.g
ACCGA094393GA094394
length1,1071,021
definitionB6Ng01-299J14.b B6Ng01-299J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,081,749 - 128,082,853)(127,951,269 - 127,952,287)
sequence
gaattcagtctttggttgccaaaaacaaaaacaaaaacaaacaaacaaaa
cccttatatttagccagggacaccatatatcacattttggttttatctgg
ccatcattttcatagctgagccaagtcttattcaactgtggtcagagaat
ccacaatttgctttttgctctgagaacttgtttgcagttttctcggtatt
ccaggacactcgctctgttttctgcccctccccccagctctttccctttc
tacatatgtacacacgggcacacctttatgtgactatttaaaccttcatt
catccattcgtttataacacctccaagacctctgtgtttgcacaaaacct
gaccacactggtgtttgtgttgcttgtaatatgttctctatattgcattg
taacatccagagactcacaaaactgccctctctggtcttgtctgctacgt
aggccgttgcctgtcagacggttagcccttctatttgtaaatttcagctt
gagctacagtgcaaaattctgtctcaaaaacaaaacaaaacaaaaaacaa
aaaataaacaaacaaacacctttgaatctatactgaaaagctgtttttcc
tttgcttttagttcccaaacagcaatcctcacagcaaggctcagagcatt
cgcatctcccagcctctgtgagagctccagagatcacccaaaaggactcc
ttcctgcctgggaaatttctatttatttatttatttagttagttagttag
ttagttagttaatgatctgggatctctctataaaatgggtacataaacca
gttgtgatagtgacacaagtagataccctgaagaggcagaggcaggagga
tcgcaaactcaaggtcagcctggctacacatttaaaaaaaaagggggggg
gggggggcacaaatcaaacatttgctgtcaacaaattacaaaacccctta
ttctaaaacatataatatgcatgtaaattatggtaatttagtaattacca
tttactaaagatcaagcaacttgccatattaatgagacgatgtgcctggt
tagcttgcaataaaggaacggaaatcttgccttgaattggtgtggagcac
ctgtagc
gaattctaggaaaggacagtcaaaggccagtgcccatccttgcaccaatc
taatcctcatggtttggggctgagaagctgtgcaaagcaagggcggaggg
acgccttctgaggcttccaactggcgcccgcggccgggctggacacagag
cagtgtaccctgagcgccccctaagttccgctctgcgaggtggccgccac
gggcggacggggaggggcgggtacattctgagtggaggatgggcgagcat
gcagctgcccgcaggccaagacactagggtaaacacgccggggtgggcgg
cgcacgcaaactgcaggacagccggcggggccaccctccccactacctgt
cgcagcctgcacgcgccagcggcctgggggccgtggggggtggggcttac
cttccggcttgccgggggccggactaaacgggggcggagcccgcggtgat
tgggcgcgggggcgggggctcaactaccgcagagtctcaagagcaggctg
ctttcacttcgctccccgcaggcactgggtcaccagctggttggagctct
gcggtccttgccatcgtcgccgtcaccggattcctgcagccgctctgcga
gctgtgttccacttggattcacaccacctccgctgctcccgccgccaccg
cctcggcgcccttcccctggccctcgtccacccaatgtctgactctgatt
ctcggactgagaaacgcaaggtaaacactccgcgactcccggggcgcagc
tggggatggatagaagacaggcgccgcagcggcttcatctgtctctggtg
tcgcacgtgcgggtggaggcactggtttgtcccgcgtggctgcaggaggc
gaacgctgggagtcgggtcgaggtcgctgcgtgccaaggcacttttgggg
aaggggttgtcggcactgaggctgcgggcacttagccgaagactgggttg
ggacgcaatgccgcacgaggggccgctgaggcatcctcttcgcggggcag
gaggcgccgtggtctcggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_128081749_128082853
seq2: B6Ng01-299J14.b_45_1151 (reverse)

seq1  GCTACAGGTGCTCCACACCCATTC-AGGCAAGA-TTCCGTT-CTTTATGC  47
      ||||||||||||||||||| |||| |||||||| ||||||| ||||||  
seq2  GCTACAGGTGCTCCACACCAATTCAAGGCAAGATTTCCGTTCCTTTATTG  50

seq1  AAAGCTAA-CAGGCACATCCGTCTCATTAATATGCAAAGTTGCTTTGATC  96
       ||||||| ||||||||| |||||||||||||||  ||||||| ||||||
seq2  CAAGCTAACCAGGCACAT-CGTCTCATTAATATGGCAAGTTGC-TTGATC  98

seq1  TTTAGTAAATGGTAATTTACTAAATTACCAATAATTACATGCATATTATA  146
      ||||||||||||||| ||||||||||||||  | ||||||||||||||||
seq2  TTTAGTAAATGGTAA-TTACTAAATTACCATAATTTACATGCATATTATA  147

seq1  TGTTTTAGAATAAGGGGTTTTGTAATTTGTTGACAGCAAATGTTTGATTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAATAAGGGGTTTTGTAATTTGTTGACAGCAAATGTTTGATTT  197

seq1  GTG--CCCCCCCCCCCCCTTTTTTTTTAAATGTGTAGCCCAGGCTGACCT  244
      |||  |||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGCCCCCCCCCCCCCCCTTTTTTTTTAAATGTGTAG-CCAGGCTGACCT  246

seq1  TGAGTTTGCGATCCTCCTGCCTCTGCCTCTTCAGGGTATCTACTTGTGTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGCGATCCTCCTGCCTCTGCCTCTTCAGGGTATCTACTTGTGTC  296

seq1  ACTATCACAACTGGTTTATGTACCCATTTTATAGAGAGATCCCAGATCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCACAACTGGTTTATGTACCCATTTTATAGAGAGATCCCAGATCAT  346

seq1  TAACTAACTAACTAACTAACTAACTAAATAAATAAATAAATAGAAATTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACTAACTAACTAACTAACTAAATAAATAAATAAATAGAAATTTC  396

seq1  CCAGGCAGGAAGGAGTCCTTTTGGGTGATCTCTGGAGCTCTCACAGAGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGAAGGAGTCCTTTTGGGTGATCTCTGGAGCTCTCACAGAGGC  446

seq1  TGGGAGATGCGAATGCTCTGAGCCTTGCTGTGAGGATTGCTGTTTGGGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGCGAATGCTCTGAGCCTTGCTGTGAGGATTGCTGTTTGGGAA  496

seq1  CTAAAAGCAAAGGAAAAACAGCTTTTCAGTATAGATTCAAAGGTGTTTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCAAAGGAAAAACAGCTTTTCAGTATAGATTCAAAGGTGTTTGT  546

seq1  TTGTTTATTTTTTGTTTTTTGTTTTGTTTTGTTTTTGAGACAGAATTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTTTTGTTTTTTGTTTTGTTTTGTTTTTGAGACAGAATTTTG  596

seq1  CACTGTAGCTCAAGCTGAAATTTACAAATAGAAGGGCTAACCGTCTGACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTCAAGCTGAAATTTACAAATAGAAGGGCTAACCGTCTGACA  646

seq1  GGCAACGGCCTACGTAGCAGACAAGACCAGAGAGGGCAGTTTTGTGAGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGGCCTACGTAGCAGACAAGACCAGAGAGGGCAGTTTTGTGAGTC  696

seq1  TCTGGATGTTACAATGCAATATAGAGAACATATTACAAGCAACACAAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGTTACAATGCAATATAGAGAACATATTACAAGCAACACAAACA  746

seq1  CCAGTGTGGTCAGGTTTTGTGCAAACACAGAGGTCTTGGAGGTGTTATAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGGTCAGGTTTTGTGCAAACACAGAGGTCTTGGAGGTGTTATAA  796

seq1  ACGAATGGATGAATGAAGGTTTAAATAGTCACATAAAGGTGTGCCCGTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATGGATGAATGAAGGTTTAAATAGTCACATAAAGGTGTGCCCGTGT  846

seq1  GTACATATGTAGAAAGGGAAAGAGCTGGGGGGAGGGGCAGAAAACAGAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATGTAGAAAGGGAAAGAGCTGGGGGGAGGGGCAGAAAACAGAGC  896

seq1  GAGTGTCCTGGAATACCGAGAAAACTGCAAACAAGTTCTCAGAGCAAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCTGGAATACCGAGAAAACTGCAAACAAGTTCTCAGAGCAAAAA  946

seq1  GCAAATTGTGGATTCTCTGACCACAGTTGAATAAGACTTGGCTCAGCTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGTGGATTCTCTGACCACAGTTGAATAAGACTTGGCTCAGCTAT  996

seq1  GAAAATGATGGCCAGATAAAACCAAAATGTGATATATGGTGTCCCTGGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATGGCCAGATAAAACCAAAATGTGATATATGGTGTCCCTGGCT  1046

seq1  AAATATAAGGGTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGGCAACCAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGGGTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGGCAACCAA  1096

seq1  AGACTGAATTC  1105
      |||||||||||
seq2  AGACTGAATTC  1107

seq1: chr2_127951269_127952287
seq2: B6Ng01-299J14.g_68_1088

seq1  GAATTCTAGGAAAGGACAGTCAAAGGCCAGTGCCCATCCTTGCACCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAAGGACAGTCAAAGGCCAGTGCCCATCCTTGCACCAATC  50

seq1  TAATCCTCATGGTTTGGGGCTGAGAAGCTGTGCAAAGCAAGGGCGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCATGGTTTGGGGCTGAGAAGCTGTGCAAAGCAAGGGCGGAGGG  100

seq1  ACGCCTTCTGAGGCTTCCAACTGGCGCCCGCGGCCGGGCTGGACACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTCTGAGGCTTCCAACTGGCGCCCGCGGCCGGGCTGGACACAGAG  150

seq1  CAGTGTACCCTGAGCGCCCCCTAAGTTCCGCTCTGCGAGGTGGCCGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACCCTGAGCGCCCCCTAAGTTCCGCTCTGCGAGGTGGCCGCCAC  200

seq1  GGGCGGACGGGGAGGGGCGGGTACATTCTGAGTGGAGGATGGGCGAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGACGGGGAGGGGCGGGTACATTCTGAGTGGAGGATGGGCGAGCAT  250

seq1  GCAGCTGCCCGCAGGCCAAGACACTAGGGTAAACACGCCGGGGTGGGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCCCGCAGGCCAAGACACTAGGGTAAACACGCCGGGGTGGGCGG  300

seq1  CGCACGCAAACTGCAGGACAGCCGGCGGGGCCACCCTCCCCACTACCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCAAACTGCAGGACAGCCGGCGGGGCCACCCTCCCCACTACCTGT  350

seq1  CGCAGCCTGCACGCGCCAGCGGCCTGGGGGCCGTGGGGGGTGGGGCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCTGCACGCGCCAGCGGCCTGGGGGCCGTGGGGGGTGGGGCTTAC  400

seq1  CTTCCGGCTTGCCGGGGGCCGGACTAAACGGGGGCGGAGCCCGCGGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGCTTGCCGGGGGCCGGACTAAACGGGGGCGGAGCCCGCGGTGAT  450

seq1  TGGGCGCGGGGGCGGGGGCTCAACTACCGCAGAGTCTCAAGAGCAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGCGGGGGCGGGGGCTCAACTACCGCAGAGTCTCAAGAGCAGGCTG  500

seq1  CTTTCACTTCGCTCCCCGCAGGCACTGGGTCACCAGCTGGTTGGAGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTTCGCTCCCCGCAGGCACTGGGTCACCAGCTGGTTGGAGCTCT  550

seq1  GCGGTCCTTGCCATCGTCGCCGTCACCGGATTCCTGCAGCCGCTCTGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCTTGCCATCGTCGCCGTCACCGGATTCCTGCAGCCGCTCTGCGA  600

seq1  GCTGTGTTCCACTTGGATTCACACCACCTCCGCTGCTCCCGCCGCCACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCCACTTGGATTCACACCACCTCCGCTGCTCCCGCCGCCACCG  650

seq1  CCTCGGCGCCCTTCCCCTGGCCCTCGTCCACCCAATGTCTGACTCTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCGCCCTTCCCCTGGCCCTCGTCCACCCAATGTCTGACTCTGATT  700

seq1  CTCGGACTGAGAAACGCAAGGTAAACACTCCGCGACTCCCGGGGCGCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCGGACTGAGAAACGCAAGGTAAACACTCCGCGACTCCCGGGGCGCA-G  749

seq1  CTGGGGATGGATAGAAGACAGGCGCCGCAGCGGCTTCATCTGTCTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATGGATAGAAGACAGGCGCCGCAGCGGCTTCATCTGTCTCTGGT  799

seq1  GTCGCACGTGCGGGTGGAGGCACTGGTTTGTCCCGCGTGGCTGCAGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCACGTGCGGGTGGAGGCACTGGTTTGTCCCGCGTGGCTGCAGGAGG  849

seq1  CGAACGCTGGGAGTCGGGTCGAGGTCGCTGCGTGCCAAGGCACTTTTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACGCTGGGAGTCGGGTCGAGGTCGCTGCGTGCCAAGGCACTTTTGGG  899

seq1  GAA-GGGTTGTCGGCACTGAAGCTGCGGGCACTTAGCCGAAGACTGGGTT  949
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGGGGTTGTCGGCACTGAGGCTGCGGGCACTTAGCCGAAGACTGGGTT  949

seq1  GGGACGCAATGCCGCACGAGGGGCCGCTGAGGCAT-CTC-TCGCGGGCAA  997
      ||||||||||||||||||||||||||||||||||| ||| |||||||  |
seq2  GGGACGCAATGCCGCACGAGGGGCCGCTGAGGCATCCTCTTCGCGGGGCA  999

seq1  GGAGGGCGCGTGGTCTCGGCTT  1019
      |||||   ||||||||||||||
seq2  GGAGGCGCCGTGGTCTCGGCTT  1021