BAC Information

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BAC

Clone NameB6Ng01-300G13
Chromosome2 (Build37)
Map Location 51,131,669 - 51,281,057
singlet/doubletdoublet
Overlap genenone
Upstream gene2010311D03Rik, LOC666781, LOC227885, Rnd3, LOC666802
Downstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300G13.bB6Ng01-300G13.g
ACCGA094994GA094995
length1,0651,114
definitionB6Ng01-300G13.b B6Ng01-300G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,279,981 - 51,281,057)(51,131,669 - 51,132,788)
sequence
gaattctctcttgaatacaacattggctttactgttgtagctctgcaata
ataagtctttaagtcagggagtatgaaatactccaaatttataccttaat
tgttttaagtaactgaatttattatgtaaaatttgggttagtaattctgt
cttttgtagttccacttgaattttagagtcagcttattgatttatacaga
aagatgaggctagggtactgatcagcatttaattgtgtctgtatgacact
cccacacttctttatgagcaagtggactttagttctccctatgtctctta
aatattcttctattgatgtaacacccttcaaacatgctattctcttcctg
tgctttcttttccttctaagtcccaattaaatacaaactgttaagtaaat
tgactttagtttatatagcagagagaacttaacagatatgtagtgatgcc
attttcaaaggatgctgtctgtagatgcaaagcttaaatcattttcagat
tttcttgaactcactttctaaatacagttgacccagcactaaacatcttc
agttaataatatctttacatctctccaaaagtttttttcctaaatgttga
ggtttttattcttttttttttttttgagtttcttcttctcctcccctctt
ctcaagttgttctgtgtattcctggaacattatgaattgcagcccaaata
acctgttccagtttgaagattaactttgtagaacattttttttgtccaca
gcataatcttccaaagaatatggagctaaggaatgccttagttggagaag
agcggatgggtggaagtcatggtggaaatgctcagtaacaactctcgagg
gagaatgaagcagtgctatcagatgtttagctcggatttgattgctgaga
taaaacaccgtgaccagagagacttggagaggaaagggtttatttcatca
catgcttctagtactgtctgtcacagagagtcagataagagcccagagca
gatggagcagatactgtgatgaatgctgctgactgattgcctcagcgtgt
tttctacaccatcta

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaagtgaaagtcactattatttccaatagtgtgac
atcaggcagaacctactccggaggcatctaggactttgctgaagtccctc
aaggagctaccactgggggatgatttctgaatcccaggctgtgatctacc
aacaaagctggcttgatgagtactaatgacagtggcctgttattcagagt
gatgcttgaaaaggaagcaactagttagacaaaagatgcagagtgcaagg
agcctaaagccctactgcccttaaggccacactagcttgccttcaggaag
cctttcttgggcattctttctaatatgtactctgatatgccagtctactc
tgcattgctagaatagctataaggggttaatcttcctccttcctagccaa
cccatgagattcttcattttccacattctttgttgcttaaaaatgtctgg
tagctgctcattgcttggcagataggatccaaattctttggtgaggcgct
cattctctgcaatattctgtgagagcctgatttttttttttaacttttta
cccattctgcattggaagaggcacacaacacttcaagggtacgctacatc
tagtcttccccctttgtcttatgatgttcctgctaccaagagtccgtact
cacttccagcctatctctatggctgcctcatatccaggtacctgatagcc
ataagacaaaggcctgctctttcttaggttggcatttcaaatccagaaat
acacacaccacacacacacacacacacacacacacacacacaccaccatt
agatttgtcagtagcaaatgatcaggccacctactaaatattgcttctca
gactgtataggactaatcttttatgcactgtatggcgtttgggtgcagta
gggccaggttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51279981_51281057
seq2: B6Ng01-300G13.b_49_1113 (reverse)

seq1  TAGATGGTGTAAGAAAACACGCTGAGCAAACCAGTCAGCAGCATTCATTC  50
      |||||||||| |||||||||||||||  || |||||||||||||||| ||
seq2  TAGATGGTGT-AGAAAACACGCTGAGGCAATCAGTCAGCAGCATTCA-TC  48

seq1  ACAGTATCTGCTTCCATTCCTGCTTCTGGGCTCTTATCCTGACTTCCTTC  100
      ||||||||||| |||||  |||| ||||||||||||| ||||||    ||
seq2  ACAGTATCTGC-TCCAT--CTGC-TCTGGGCTCTTAT-CTGACT---CTC  90

seq1  TGTGACAGACAGTTACTTAGAAGCATGTGATGAAATAAACCCTTTCCTCT  150
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  TGTGACAGACAG-TAC-TAGAAGCATGTGATGAAATAAACCCTTTCCTCT  138

seq1  CCAAGTCTCTCTGGTCACGGTGTTTTATCTCAGCAATCAAATCCGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTCTCTGGTCACGGTGTTTTATCTCAGCAATCAAATCCGAGCTA  188

seq1  AACATCTGATAGCACTGCTTCATTCTCCCTCGAGAGTTGTTACTGAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGATAGCACTGCTTCATTCTCCCTCGAGAGTTGTTACTGAGCAT  238

seq1  TTCCACCATGACTTCCACCCATCCGCTCTTCTCCAACTAAGGCATTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCATGACTTCCACCCATCCGCTCTTCTCCAACTAAGGCATTCCTT  288

seq1  AGCTCCATATTCTTTGGAAGATTATGCTGTGGACAAAAAAAATGTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATATTCTTTGGAAGATTATGCTGTGGACAAAAAAAATGTTCTAC  338

seq1  AAAGTTAATCTTCAAACTGGAACAGGTTATTTGGGCTGCAATTCATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATCTTCAAACTGGAACAGGTTATTTGGGCTGCAATTCATAATG  388

seq1  TTCCAGGAATACACAGAACAACTTGAGAAGAGGGGAGGAGAAGAAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAATACACAGAACAACTTGAGAAGAGGGGAGGAGAAGAAGAAAC  438

seq1  TCAAAAAAAAAAAAAAGAATAAAAACCTCAACATTTAGGAAAAAAACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAAAAAAGAATAAAAACCTCAACATTTAGGAAAAAAACTTT  488

seq1  TGGAGAGATGTAAAGATATTATTAACTGAAGATGTTTAGTGCTGGGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGTAAAGATATTATTAACTGAAGATGTTTAGTGCTGGGTCAA  538

seq1  CTGTATTTAGAAAGTGAGTTCAAGAAAATCTGAAAATGATTTAAGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTAGAAAGTGAGTTCAAGAAAATCTGAAAATGATTTAAGCTTTG  588

seq1  CATCTACAGACAGCATCCTTTGAAAATGGCATCACTACATATCTGTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACAGACAGCATCCTTTGAAAATGGCATCACTACATATCTGTTAAG  638

seq1  TTCTCTCTGCTATATAAACTAAAGTCAATTTACTTAACAGTTTGTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTGCTATATAAACTAAAGTCAATTTACTTAACAGTTTGTATTTA  688

seq1  ATTGGGACTTAGAAGGAAAAGAAAGCACAGGAAGAGAATAGCATGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGACTTAGAAGGAAAAGAAAGCACAGGAAGAGAATAGCATGTTTGA  738

seq1  AGGGTGTTACATCAATAGAAGAATATTTAAGAGACATAGGGAGAACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTACATCAATAGAAGAATATTTAAGAGACATAGGGAGAACTAAA  788

seq1  GTCCACTTGCTCATAAAGAAGTGTGGGAGTGTCATACAGACACAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTGCTCATAAAGAAGTGTGGGAGTGTCATACAGACACAATTAAA  838

seq1  TGCTGATCAGTACCCTAGCCTCATCTTTCTGTATAAATCAATAAGCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCAGTACCCTAGCCTCATCTTTCTGTATAAATCAATAAGCTGAC  888

seq1  TCTAAAATTCAAGTGGAACTACAAAAGACAGAATTACTAACCCAAATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTCAAGTGGAACTACAAAAGACAGAATTACTAACCCAAATTTT  938

seq1  ACATAATAAATTCAGTTACTTAAAACAATTAAGGTATAAATTTGGAGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAAATTCAGTTACTTAAAACAATTAAGGTATAAATTTGGAGTAT  988

seq1  TTCATACTCCCTGACTTAAAGACTTATTATTGCAGAGCTACAACAGTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCCCTGACTTAAAGACTTATTATTGCAGAGCTACAACAGTAAA  1038

seq1  GCCAATGTTGTATTCAAGAGAGAATTC  1077
      |||||||||||||||||||||||||||
seq2  GCCAATGTTGTATTCAAGAGAGAATTC  1065


seq1: chr2_51131669_51132788
seq2: B6Ng01-300G13.g_67_1180

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAAGTGAAAGTCACTATTATTTCCAATAGTGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAAGTGAAAGTCACTATTATTTCCAATAGTGTGAC  250

seq1  ATCAGGCAGAACCTACTCCGGAGGCATCTAGGACTTTGCTGAAGTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCAGAACCTACTCCGGAGGCATCTAGGACTTTGCTGAAGTCCCTC  300

seq1  AAGGAGCTACCACTGGGGGATGATTTCTGAATCCCAGGCTGTGATCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTACCACTGGGGGATGATTTCTGAATCCCAGGCTGTGATCTACC  350

seq1  AACAAAGCTGGCTTGATGAGTACTAATGACAGTGGCCTGTTATTCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCTGGCTTGATGAGTACTAATGACAGTGGCCTGTTATTCAGAGT  400

seq1  GATGCTTGAAAAGGAAGCAACTAGTTAGACAAAAGATGCAGAGTGCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGAAAAGGAAGCAACTAGTTAGACAAAAGATGCAGAGTGCAAGG  450

seq1  AGCCTAAAGCCCTACTGCCCTTAAGGCCACACTAGCTTGCCTTCAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAAGCCCTACTGCCCTTAAGGCCACACTAGCTTGCCTTCAGGAAG  500

seq1  CCTTTCTTGGGCATTCTTTCTAATATGTACTCTGATATGCCAGTCTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGGGCATTCTTTCTAATATGTACTCTGATATGCCAGTCTACTC  550

seq1  TGCATTGCTAGAATAGCTATAAGGGGTTAATCTTCCTCCTTCCTAGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGCTAGAATAGCTATAAGGGGTTAATCTTCCTCCTTCCTAGCCAA  600

seq1  CCCATGAGATTCTTCATTTTCCACATTCTTTGTTGCTTAAAAATGTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGATTCTTCATTTTCCACATTCTTTGTTGCTTAAAAATGTCTGG  650

seq1  TAGCTGCTCATTGCTTGGCAGATAGGATCCAAATTCTTTGGTGAGGCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTCATTGCTTGGCAGATAGGATCCAAATTCTTTGGTGAGGCGCT  700

seq1  CATTCTCTGCAATATTCTGTGAGAGCCTGATTTTTTTTTTTAACTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTGCAATATTCTGTGAGAGCCTGATTTTTTTTTTTAACTTTTTA  750

seq1  CCCATTCTGCATTGGAAGAGGCACACAACACTTCAAGGGTACGCTACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTGCATTGGAAGAGGCACACAACACTTCAAGGGTACGCTACATC  800

seq1  TAGTCTTCCCCCTTTGTCTTATGATGTTCCTGCTACCAAGAGTCCGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCCCCCTTTGTCTTATGATGTTCCTGCTACCAAGAGTCCGTACT  850

seq1  CACTTCCAGCCTATCTCTATGGCTGCCTCATATCCAGGTACCTGATAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAGCCTATCTCTATGGCTGCCTCATATCCAGGTACCTGATAGCC  900

seq1  ATAAGACAAAAGCCTGCTCTTTCTTAGGTTGGCATTTCAAATCCAGAAAT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAAAGGCCTGCTCTTTCTTAGGTTGGCATTTCAAATCCAGAAAT  950

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  1000
      |||||||| ||||||||||||||||||||||||||||||||||| ||| |
seq2  ACACACAC-CACACACACACACACACACACACACACACACACAC-CAC-C  997

seq1  ATAAGATTTGTCAGTAGCAAAATGATCAGGCCACCTACTAAATATTTGCT  1050
      || ||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  ATTAGATTTGTCAGTAGC-AAATGATCAGGCCACCTACTAAATA-TTGCT  1045

seq1  TCTCAAGACTGTATAGGACTTATTCTTTTTAATGCACTGTATTGCGTTT-  1099
      |||| |||||||||||||| || ||||||  ||||||||||| |||||| 
seq2  TCTC-AGACTGTATAGGAC-TAATCTTTT--ATGCACTGTATGGCGTTTG  1091

seq1  GGTGCAGTAGGGC--AGTTAAAA  1120
      |||||||||||||   |||||||
seq2  GGTGCAGTAGGGCCAGGTTAAAA  1114


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