BAC Information

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BAC

Clone NameB6Ng01-300L10
Chromosome2 (Build37)
Map Location 154,740,437 - 154,915,429
singlet/doubletdoublet
Overlap genea, Ahcy
Upstream geneRya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300L10.bB6Ng01-300L10.g
ACCGA095220GA095221
length1,173982
definitionB6Ng01-300L10.b B6Ng01-300L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,914,257 - 154,915,429)(154,740,437 - 154,741,419)
sequence
gaattcactctgtggagcctcaaactcagaaatccacctgcctctgcctc
ccgagtgctgggattaaaggcgtgcgccaccacgcccagcagctgccacc
tttttttttttttttaagatttatttatttattatatgtaagtacactgt
agctgtcttcagacacaccagaagagggcatcagatctcattacggatgg
ttgtgagccaccatgtggttgttgggaattgaactcaggacctctgaaag
agcaatcagtgctcttagccactgagccatctctctccagccccgctgcc
accttttaatgggccctcagacttgtatccccaacactggagtatccccc
accctggagcacaggtgggatcaacgtgcagagttggcctagagtgccac
catcttagccctcagacaaccttttcagggtggtttcctgtttccttgct
tgagtgaggcagatggctacctttgctaaacagagcaatgctgagcctat
tgcttttttttagccttctcctatggtgcctaatagaggctctgtactca
acagaagctcagagagtcccagaaacagggccatcaagatgtgtgcattt
accccttacaaacctgacaacctgagttcaagtcctgcaacggaaaagtt
gtcctctgatctgcacttcttcacagccctgctataaataaataattttt
aaaaaactctctactgaggggtttcatgggactgctcttgataataataa
ctcaaaatggaacaccaagtatggatgtggcaggaacaaacttatattca
tcatttccttcactctattcaataacactaggagtttacactgctgtcct
ttatctaacggtggaaacaccctcacaggatttcaacctctgcttagagc
tggaaaaatgaccgtggcagaattaaatggctcccgaaagatgttattcc
acatccaggctagcatgtgctagaaagataagtaaacaaggtattgcttc
aacagcagctttggctcctgtatgacgtatgatcctagctccagcccctg
ttgcagaggctatgagcgtctggcctggaatgcctagattcaagtccaat
gttgcaattcagaatccagtctttctgaagactgcagatcttctccaagc
ctctatgtagcttctccacttgg
gaattcttctaaaaaaaaataataataacctttccattgttttactgatt
ttgagaattctccctttttcattccttgggcttccctttctcctataact
tcagtaggacaacattttttttttcgccactgaacttctatagcacctta
tttatgcttcttttatcatttgtcatgatgtctttagcatcacagccccc
ccccctttatatagaaacttaaggtctgacctaattcacaagccataaac
atctataatgcacattttttatcatcttaaagttacgttttataatattt
aaagactcatttttaaaaagatgtcgtgttattttcatttttgtgcatga
gtccttgtctgcagttgttgtgaaccagctgtgaactactgggtgggcac
tgggtcctgagctctgatgatctctataagagcagggtggctcttaacca
atgagctatttctctggcctctataaggttaattttgattaaccttggtt
tttatctgtgtgaatattttgttatctgaactaagtctgtctctccagaa
aggtttgttatttgctcttgtaaaatgtcttcatatacagacagagatag
caacattgccctcccctgttgtttttttcaagacagattttctctgataa
tccctggctgccctgacactcactctatagaccatgctgacctcgaactc
agagcctgcctctgcctcctaaatgctgggattaaaggcatcaccatcca
atgtccaggctatggagacatgttcttaagggaggcattgctttcctgta
gagcaagaatatgagacttgtgtccttctcctgtgtgtttgatggtagaa
aaaaatctagttaattctctgaccaatgtccatgttctcatgttcctcct
gtgcatccatcaatttcatgtctcattctctgtccctgagttttggttgt
ttgtttgcttgattgaatatgtgtgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154914257_154915429
seq2: B6Ng01-300L10.b_46_1218 (reverse)

seq1  CCAAGTGGAGAAAGGCTAACAAGAGGCTGTGGAGAAGGATCCTGCAAGGT  50
      ||||||||||||  ||||   ||||||| ||||||| ||| |||||  ||
seq2  CCAAGTGGAGAA--GCTACATAGAGGCT-TGGAGAA-GAT-CTGCA--GT  43

seq1  CTTCAG-AAGACTGGGATCCTGAAATGCAAACATTGACCTTGAATCTAGG  99
      |||||| |||||| |||| ||||| ||| |||||||  ||||||||||||
seq2  CTTCAGAAAGACT-GGATTCTGAATTGC-AACATTGGACTTGAATCTAGG  91

seq1  CA-TCCAGG-CAGACGCTCATAGCCTCTGCACAAGGGGCTGGAGCTAGGA  147
      || |||||| |||||||||||||||||||||  |||||||||||||||||
seq2  CATTCCAGGCCAGACGCTCATAGCCTCTGCAACAGGGGCTGGAGCTAGGA  141

seq1  TCATACGTCATACAGAAGCCAAAGCTGCTGTTTGAGC-ATACC-TGTTTA  195
      ||||||||||||||| ||||||||||||||||  ||| ||||| ||||||
seq2  TCATACGTCATACAGGAGCCAAAGCTGCTGTTGAAGCAATACCTTGTTTA  191

seq1  CTTATCTTTCTAGCACATGCTAGCCTGGATGT-GAAT-ACATCTTTCGGG  243
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CTTATCTTTCTAGCACATGCTAGCCTGGATGTGGAATAACATCTTTCGGG  241

seq1  AGCCATTTAA-TCTGCCACGGTCATTTTTCCAGCTCTAAAGCAGAGGT--  290
      |||||||||| |||||||||||||||||||||||||| ||||||||||  
seq2  AGCCATTTAATTCTGCCACGGTCATTTTTCCAGCTCT-AAGCAGAGGTTG  290

seq1  GAATCCTGTGAGGGTGTTTCCACCGTTAGATAAAGGACAGCAGTGTAAAC  340
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGTGAGGGTGTTTCCACCGTTAGATAAAGGACAGCAGTGTAAAC  340

seq1  TCCTAGTGTTATTGAATAGAGTGAAGGAAATGATGAATATAAGTTTGTTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTTATTGAATAGAGTGAAGGAAATGATGAATATAAGTTTGTTC  390

seq1  CTGCCACATCCATACTTGGTGTTCCATTTTGAGTTATTATTATCAAGAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACATCCATACTTGGTGTTCCATTTTGAGTTATTATTATCAAGAGC  440

seq1  AGTCCCATGAAACCCCTCAGTAGAGAGTTTTTTAAAAATTATTTATTTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATGAAACCCCTCAGTAGAGAGTTTTTTAAAAATTATTTATTTAT  490

seq1  AGCAGGGCTGTGAAGAAGTGCAGATCAGAGGACAACTTTTCCGTTGCAGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTGTGAAGAAGTGCAGATCAGAGGACAACTTTTCCGTTGCAGG  540

seq1  ACTTGAACTCAGGTTGTCAGGTTTGTAAGGGGTAAATGCACACATCTTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTCAGGTTGTCAGGTTTGTAAGGGGTAAATGCACACATCTTGA  590

seq1  TGGCCCTGTTTCTGGGACTCTCTGAGCTTCTGTTGAGTACAGAGCCTCTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGTTTCTGGGACTCTCTGAGCTTCTGTTGAGTACAGAGCCTCTA  640

seq1  TTAGGCACCATAGGAGAAGGCTAAAAAAAAGCAATAGGCTCAGCATTGCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCACCATAGGAGAAGGCTAAAAAAAAGCAATAGGCTCAGCATTGCT  690

seq1  CTGTTTAGCAAAGGTAGCCATCTGCCTCACTCAAGCAAGGAAACAGGAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGCAAAGGTAGCCATCTGCCTCACTCAAGCAAGGAAACAGGAAA  740

seq1  CCACCCTGAAAAGGTTGTCTGAGGGCTAAGATGGTGGCACTCTAGGCCAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGAAAAGGTTGTCTGAGGGCTAAGATGGTGGCACTCTAGGCCAA  790

seq1  CTCTGCACGTTGATCCCACCTGTGCTCCAGGGTGGGGGATACTCCAGTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACGTTGATCCCACCTGTGCTCCAGGGTGGGGGATACTCCAGTGT  840

seq1  TGGGGATACAAGTCTGAGGGCCCATTAAAAGGTGGCAGCGGGGCTGGAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATACAAGTCTGAGGGCCCATTAAAAGGTGGCAGCGGGGCTGGAGA  890

seq1  GAGATGGCTCAGTGGCTAAGAGCACTGATTGCTCTTTCAGAGGTCCTGAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTGGCTAAGAGCACTGATTGCTCTTTCAGAGGTCCTGAG  940

seq1  TTCAATTCCCAACAACCACATGGTGGCTCACAACCATCCGTAATGAGATC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAACAACCACATGGTGGCTCACAACCATCCGTAATGAGATC  990

seq1  TGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATAT  1040

seq1  AATAAATAAATAAATCTTAAAAAAAAAAAAAAAGGTGGCAGCTGCTGGGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATCTTAAAAAAAAAAAAAAAGGTGGCAGCTGCTGGGC  1090

seq1  GTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGG  1140

seq1  ATTTCTGAGTTTGAGGCTCCACAGAGTGAATTC  1173
      |||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTTGAGGCTCCACAGAGTGAATTC  1173

seq1: chr2_154740437_154741419
seq2: B6Ng01-300L10.g_65_1046

seq1  GAATTCTTCTAAAAAAAAATAATAATAACCTTTCCATTGTTTTACTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAAAAAAAATAATAATAACCTTTCCATTGTTTTACTGATT  50

seq1  TTGAGAATTCTCCCTTTTTCATTCCTTGGGCTTCCCTTTCTCCTATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTCTCCCTTTTTCATTCCTTGGGCTTCCCTTTCTCCTATAACT  100

seq1  TCAGTAGGACAACATTTTTTTTTTCGCCACTGAACTTCTATAGCACCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGACAACATTTTTTTTTTCGCCACTGAACTTCTATAGCACCTTA  150

seq1  TTTATGCTTCTTTTATCATTTGTCATGATGTCTTTAGCATCACAGCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTCTTTTATCATTTGTCATGATGTCTTTAGCATCACAGCCCCC  200

seq1  CCCCCTTTATATAGAAACTTAAGGTCTGACCTAATTCACAAGCCATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTATATAGAAACTTAAGGTCTGACCTAATTCACAAGCCATAAAC  250

seq1  ATCTATAATGCACATTTTTTATCATCTTAAAGTTACGTTTTATAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATGCACATTTTTTATCATCTTAAAGTTACGTTTTATAATATTT  300

seq1  AAAGACTCATTTTTAAAAAGATGTCGTGTTATTTTCATTTTTGTGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCATTTTTAAAAAGATGTCGTGTTATTTTCATTTTTGTGCATGA  350

seq1  GTCCTTGTCTGCAGTTGTTGTGAACCAGCTGTGAACTACTGGGTGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTCTGCAGTTGTTGTGAACCAGCTGTGAACTACTGGGTGGGCAC  400

seq1  TGGGTCCTGAGCTCTGATGATCTCTATAAGAGCAGGGTGGCTCTTAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTGAGCTCTGATGATCTCTATAAGAGCAGGGTGGCTCTTAACCA  450

seq1  ATGAGCTATTTCTCTGGCCTCTATAAGGTTAATTTTGATTAACCTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTATTTCTCTGGCCTCTATAAGGTTAATTTTGATTAACCTTGGTT  500

seq1  TTTATCTGTGTGAATATTTTGTTATCTGAACTAAGTCTGTCTCTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTGTGAATATTTTGTTATCTGAACTAAGTCTGTCTCTCCAGAA  550

seq1  AGGTTTGTTATTTGCTCTTGTAAAATGTCTTCATATACAGACAGAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTATTTGCTCTTGTAAAATGTCTTCATATACAGACAGAGATAG  600

seq1  CAACATTGCCCTCCCCTGTTGTTTTTTTCAAGACAGATTTTCTCTGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGCCCTCCCCTGTTGTTTTTTTCAAGACAGATTTTCTCTGATAA  650

seq1  TCCCTGGCTGCCCTGACACTCACTCTATAGACCATGCTGACCTCGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGCCCTGACACTCACTCTATAGACCATGCTGACCTCGAACTC  700

seq1  AGAGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGCATCACCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGCATCACCATCCA  750

seq1  ATGTCCAGGCTATGGAGACATGTTCTTAAGGGAGGCATTGCTTTCCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGCTATGGAGACATGTTCTTAAGGGAGGCATTGCTTTCCTGTA  800

seq1  GAGCAAGAATATGAGACTTGTGTCCTTCTCCTGTGTGTTTGATGGTAGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGCAAGAATATGAGACTTGTGTCCTTCTCCTGTGTGTTTGATGGTAG-A  849

seq1  AAAAAATCTAGTTAATTCTCTGACCAAATGTCCATGTTCTCATGTTCCTC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAAATCTAGTTAATTCTCTGACC-AATGTCCATGTTCTCATGTTCCTC  898

seq1  CTGTGCATCCATCAATTTCATGTCTCATTCTCTGTCCCTGAGTTTT-GTT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGTGCATCCATCAATTTCATGTCTCATTCTCTGTCCCTGAGTTTTGGTT  948

seq1  GTTTGTTTGCTTGATTGAATATGTGTGTGTGTAT  983
      ||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGCTTGATTGAATATGTGTGTGTGTAT  982