BAC Information

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BAC

Clone NameB6Ng01-300L17
Chromosome2 (Build37)
Map Location 90,362,554 - 90,521,082
singlet/doubletdoublet
Overlap genePtprj, Nup160
Upstream geneOlfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, 4933423P22Rik
Downstream geneFnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300L17.bB6Ng01-300L17.g
ACCGA095232GA095233
length1,1411,081
definitionB6Ng01-300L17.b B6Ng01-300L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,362,554 - 90,363,702)(90,520,013 - 90,521,082)
sequence
gaattcagggcacctccccaactcacaaagctccctttgaggcacttcag
cccaagagcacaaagcagggggaagctcccccctcctagctaaccttatt
ctctgtgtgcagtaccaatcactccagaccacatcccattcccaccacca
cctgaaaacccacttcctccacagaacacatcccaggaagcaaaagtcaa
cattaggccctggcgtctccaagaacaccttgtatattgacctatgtgtg
ccagcaagtaaccgagctggaaaaacagactcgcaaagcctggaaaggga
tcagagtaccctggcacatcttcaacactgctggttagacccagcattag
cagggccgagccaagcagagtcctgaaaaatccccaggtcaatgccgggg
ccaaagataagagagtcacagtggtatttcctagacctgaccgggaggcc
tacctgtggaatggcactctcagacaccaccatccccaactttcccaaac
ccatctgcatgtggaacggcagacaggcccttgtgtaccagcctgcctgg
caagctagtttccttgaaatagagtgccgtgggctcttctgagtgctttg
aacatgtcatggtgctctacttcacatgtccgtcacaagacctgccctta
agccttcccagaccagaacttatcaggacaatcagactagcacgggtgga
agggaaaagaacagaggacaaaaaaaaaaaaaaaaaaagcaagcaaaagg
ataggataggataggataggataggattacctaggagacctgcagagatt
tggggctttgaagacatgaaaaattacggttccatgctcacaggcaatca
cccaggcaaaaacatgctccatattacttcataaacacaccttggtgtat
gttgagtccctacatgcaccagcatcatagtggagtatggataagatagg
agatacatttattcccttcatttcatcctccaaacaccttggggagaaca
ccagaggtgatctgactttaccagtgatgaaattcacagtcagctataac
tgttctggtgttaaaacgacctccatggtataagaatcagcaccagtttg
agtcagagctcccactcacgttccatgaaggcatcagcaag
gaattctcagccacctctctagcactacgtctgtctgtgtgtccccctgc
ttcccaccaagatgatcatgaaccaaccatatgaacctgtaagcaagcct
caattaaatgcttccctttataagaagtgctgtggccatggtgtctcttc
acagtaatagaaaccctaagacacataacatactatgcttaaacaaggcc
agacctcacaggatttgagaagatttctccaaggtaccagagtctctttc
tatcacgttaccaacctctgcatccttgtccccaaaaccaggtctccttc
agttaaagtacagatcttggctttctcagagtggaattctttatgcatct
actgtcctcctttcattctttctttgatgctcacattcttggtaccctgg
attccctcctaacccagctctcaaggtctgtctgtctattcccttccatg
gtgtctacttgatcctctttgtccatgcttagctaacttttttgatcctt
cggatctcagtttaactgactttcaataccctcctctttcctcccaatac
catctgattgtcccattagcttcttgtagtccctagacttttctctgggg
catgaaaatctgtatttatatatctatgttatatcattagtttaatatcc
tttgtgtgtgaaattggcacaacacaagtggcacccactatatatgtcta
ctattatactgctacaatatcttgcatcatttcctagtactcagcaccaa
gtgtgacatgtataagcttaatctcatcaacagaattaaggttgaaagac
cataatgacattttgaatcaatggctaaaatgggtcttcagtgttgtatc
tcaactatactcttttagtttttatccaggtacgagaatactttctagaa
ctgattctgacatgaacacgagacaccgggttctctgctgtgtgaggatt
acggctagacgtagtaacttgggaacaggcacagaatatttaccacatta
gaacaacccttccatcttctggtaggggggaagggaaaaacggcagcact
aacatggatgaacctgtttcctgggtgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_90362554_90363702
seq2: B6Ng01-300L17.b_48_1188

seq1  GAATTCAGGGCACCTCCCCAACTCACAAAGCTCCCTTTGAGGCACTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCACCTCCCCAACTCACAAAGCTCCCTTTGAGGCACTTCAG  50

seq1  CCCAAGAGCACAAAGCAGGGGGAAGCTCCCCCCTCCTAGCTAACCTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCACAAAGCAGGGGGAAGCTCCCCCCTCCTAGCTAACCTTATT  100

seq1  CTCTGTGTGCAGTACCAATCACTCCAGACCACATCCCATTCCCACCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGCAGTACCAATCACTCCAGACCACATCCCATTCCCACCACCA  150

seq1  CCTGAAAACCCACTTCCTCCACAGAACACATCCCAGGAAGCAAAAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAACCCACTTCCTCCACAGAACACATCCCAGGAAGCAAAAGTCAA  200

seq1  CATTAGGCCCTGGCGTCTCCAAGAACACCTTGTATATTGACCTATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCCCTGGCGTCTCCAAGAACACCTTGTATATTGACCTATGTGTG  250

seq1  CCAGCAAGTAACCGAGCTGGAAAAACAGACTCGCAAAGCCTGGAAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGTAACCGAGCTGGAAAAACAGACTCGCAAAGCCTGGAAAGGGA  300

seq1  TCAGAGTACCCTGGCACATCTTCAACACTGCTGGTTAGACCCAGCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTACCCTGGCACATCTTCAACACTGCTGGTTAGACCCAGCATTAG  350

seq1  CAGGGCCGAGCCAAGCAGAGTCCTGAAAAATCCCCAGGTCAATGCCGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCGAGCCAAGCAGAGTCCTGAAAAATCCCCAGGTCAATGCCGGGG  400

seq1  CCAAAGATAAGAGAGTCACAGTGGTATTTCCTAGACCTGACCGGGAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATAAGAGAGTCACAGTGGTATTTCCTAGACCTGACCGGGAGGCC  450

seq1  TACCTGTGGAATGGCACTCTCAGACACCACCATCCCCAACTTTCCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGGAATGGCACTCTCAGACACCACCATCCCCAACTTTCCCAAAC  500

seq1  CCATCTGCATGTGGAACGGCAGACAGGCCCTTGTGTACCAGCCTGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCATGTGGAACGGCAGACAGGCCCTTGTGTACCAGCCTGCCTGG  550

seq1  CAAGCTAGTTTCCTTGAAATAGAGTGCCGTGGGCTCTTCTGAGTGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAGTTTCCTTGAAATAGAGTGCCGTGGGCTCTTCTGAGTGCTTTG  600

seq1  AACATGTCATGGTGCTCTACTTCACATGTCCGTCACAAGACCTGCCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCATGGTGCTCTACTTCACATGTCCGTCACAAGACCTGCCCTTA  650

seq1  AGCCTTCCCAGACCAGAACTTATCAGGACAATCAGACTAGCACGGGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCCAGACCAGAACTTATCAGGACAATCAGACTAGCACGGGTGGA  700

seq1  AGGGAAAAGAACAGAGGACAAAAAAAAAAAAAAAAAAAGCAAGCAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGAACAGAGGACAAAAAAAAAAAAAAAAAAAGCAAGCAAAAGG  750

seq1  ATAGGATAGGATAGGATAGGATAGGATTACCTAGGAGACCTGCAGAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATAGGATAGGATAGGATAGGATTACCTAGGAGACCTGCAGAGATT  800

seq1  TGGGGCTTTGAAGACATGAAAAATTACGGTTCCATGCTCACAGGCAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTTGAAGACATGAAAAATTACGGTTCCATGCTCACAGGCAATCA  850

seq1  CCCAGGCAAAAACATGCTCCATATTACTTCATAAACACACCTTGGTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAAAAACATGCTCCATATTACTTCATAAACACACCTTGGTGTAT  900

seq1  GTTGAGTCCCTACATGCACCAGCATCATAGTGGAGTATGGAT-AGATAGG  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTGAGTCCCTACATGCACCAGCATCATAGTGGAGTATGGATAAGATAGG  950

seq1  AGATACATTTATTCCCTTCATTTCATCCTCCCAAACACCTT-GGGAG-AC  997
      ||||||||||||||||||||||||||||| ||||||||||| ||||| ||
seq2  AGATACATTTATTCCCTTCATTTCATCCT-CCAAACACCTTGGGGAGAAC  999

seq1  ACCAGAGGTGATCTGACTTTACCAGTGATGAAATTCACAGTCAGGCTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||| |||   
seq2  ACCAGAGGTGATCTGACTTTACCAGTGATGAAATTCACAGTCA-GCT--A  1046

seq1  TAACTTGTTCTGGTG-TAAAACAGACTCCATGGTAATACAGAATCAGCAC  1096
      |||| |||||||||| ||||||   ||||||||| ||| |||||||||||
seq2  TAAC-TGTTCTGGTGTTAAAACGACCTCCATGGT-ATA-AGAATCAGCAC  1093

seq1  CAGTCTGAGTCAGAGCTCCCACTCAACGTTTCCCATGAAAAGGCATCAGC  1146
      |||| ||||||||||||||||||| |||||  |||||  |||||||||||
seq2  CAGTTTGAGTCAGAGCTCCCACTC-ACGTT--CCATG--AAGGCATCAGC  1138

seq1  AAG  1149
      |||
seq2  AAG  1141

seq1: chr2_90520013_90521082
seq2: B6Ng01-300L17.g_68_1148 (reverse)

seq1  CCATCA-CCAGG-AACAGGTTCATTCATTGGTAAGTGCTGC--GTTTTCC  46
      |||||| ||||| ||||||||||| |||  || ||||||||   ||||||
seq2  CCATCACCCAGGAAACAGGTTCATCCAT--GTTAGTGCTGCCGTTTTTCC  48

seq1  CTT-CCCCCTA-CAG-AGATGG-AGGGTTG-TCTAATGT-GTAAATA-TC  89
      ||| ||||||| ||| |||||| ||||||| |||||||| ||||||| ||
seq2  CTTCCCCCCTACCAGAAGATGGAAGGGTTGTTCTAATGTGGTAAATATTC  98

seq1  TGTGCCTGTT-CCAAGTTACTACGTCTAGCCGTAATCCTCACACAAGCAG  138
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TGTGCCTGTTCCCAAGTTACTACGTCTAGCCGTAATCCTCACAC-AGCAG  147

seq1  AGAA-CCGGTGTCTCGTGTTCATGTCAGAATCAGTTCTAG-AAGTATTCT  186
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAACCCGGTGTCTCGTGTTCATGTCAGAATCAGTTCTAGAAAGTATTCT  197

seq1  CGTACCTGGATAAAAACTAAAAGAGTATAGTTGAGATACAACACTGAAGA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCTGGATAAAAACTAAAAGAGTATAGTTGAGATACAACACTGAAGA  247

seq1  CCCATTTTAGCCATTGATTCAAAATGTCATTATGGTCTTTCAACCTTAAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTAGCCATTGATTCAAAATGTCATTATGGTCTTTCAACCTTAAT  297

seq1  TCTGTTGATGAGATTAAGCTTATACATGTCACACTTGGTGCTGAGTACTA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGATGAGATTAAGCTTATACATGTCACACTTGGTGCTGAGTACTA  347

seq1  GGAAATGATGCAAGATATTGTAGCAGTATAATAGTAGACATATATAGTGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATGCAAGATATTGTAGCAGTATAATAGTAGACATATATAGTGG  397

seq1  GTGCCACTTGTGTTGTGCCAATTTCACACACAAAGGATATTAAACTAATG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTGTGTTGTGCCAATTTCACACACAAAGGATATTAAACTAATG  447

seq1  ATATAACATAGATATATAAATACAGATTTTCATGCCCCAGAGAAAAGTCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACATAGATATATAAATACAGATTTTCATGCCCCAGAGAAAAGTCT  497

seq1  AGGGACTACAAGAAGCTAATGGGACAATCAGATGGTATTGGGAGGAAAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTACAAGAAGCTAATGGGACAATCAGATGGTATTGGGAGGAAAGA  547

seq1  GGAGGGTATTGAAAGTCAGTTAAACTGAGATCCGAAGGATCAAAAAAGTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTATTGAAAGTCAGTTAAACTGAGATCCGAAGGATCAAAAAAGTT  597

seq1  AGCTAAGCATGGACAAAGAGGATCAAGTAGACACCATGGAAGGGAATAGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGCATGGACAAAGAGGATCAAGTAGACACCATGGAAGGGAATAGA  647

seq1  CAGACAGACCTTGAGAGCTGGGTTAGGAGGGAATCCAGGGTACCAAGAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACCTTGAGAGCTGGGTTAGGAGGGAATCCAGGGTACCAAGAAT  697

seq1  GTGAGCATCAAAGAAAGAATGAAAGGAGGACAGTAGATGCATAAAGAATT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATCAAAGAAAGAATGAAAGGAGGACAGTAGATGCATAAAGAATT  747

seq1  CCACTCTGAGAAAGCCAAGATCTGTACTTTAACTGAAGGAGACCTGGTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGAGAAAGCCAAGATCTGTACTTTAACTGAAGGAGACCTGGTTT  797

seq1  TGGGGACAAGGATGCAGAGGTTGGTAACGTGATAGAAAGAGACTCTGGTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAAGGATGCAGAGGTTGGTAACGTGATAGAAAGAGACTCTGGTA  847

seq1  CCTTGGAGAAATCTTCTCAAATCCTGTGAGGTCTGGCCTTGTTTAAGCAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGAAATCTTCTCAAATCCTGTGAGGTCTGGCCTTGTTTAAGCAT  897

seq1  AGTATGTTATGTGTCTTAGGGTTTCTATTACTGTGAAGAGACACCATGGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTATGTGTCTTAGGGTTTCTATTACTGTGAAGAGACACCATGGC  947

seq1  CACAGCACTTCTTATAAAGGGAAGCATTTAATTGAGGCTTGCTTACAGGT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACTTCTTATAAAGGGAAGCATTTAATTGAGGCTTGCTTACAGGT  997

seq1  TCATATGGTTGGTTCATGATCATCTTGGTGGGAAGCAGGGGGACACACAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGTTGGTTCATGATCATCTTGGTGGGAAGCAGGGGGACACACAG  1047

seq1  ACAGACGTAGTGCTAGAGAGGTGGCTGAGAATTC  1070
      ||||||||||||||||||||||||||||||||||
seq2  ACAGACGTAGTGCTAGAGAGGTGGCTGAGAATTC  1081