BAC Information

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BAC

Clone NameB6Ng01-301M03
Chromosome2 (Build37)
Map Location 9,281,054 - 9,392,394
singlet/doubletdoublet
Overlap geneLOC100040710
Upstream genenone
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301M03.bB6Ng01-301M03.g
ACCGA095987GA095988
length6841,153
definitionB6Ng01-301M03.b B6Ng01-301M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,391,711 - 9,392,394)(9,281,054 - 9,282,231)
sequence
gaattcttgacaaggaccagtgtctcagactcttgggaaccggcaaagct
tccctccaggggaggcttagaagcttggtgggcaaagccttctggtacaa
ctataggtgttttcaaaggattgctcagtgtgtgcaaaaactagacacta
cctcttcctcctgaaggatgatggacttaagactgctccactacagagac
ctcctactgagaccagctatctgccttctggtgctgtgtgtaataaagat
gctgaggttccaagttggtgcctagtcagtattacttcataagaccaagc
atggcccatgtgacccagactttccttatgtgtgtctgtcctttcttcac
tgccttgtcacatcagtcaaggatcaagcaatacctgacatgtaagggaa
tacagagacataaaagaggtttttcaggtgaactgggttatagagtccca
gagcagggaaacacagaagtcccatttgaagtttccatttcatgtatttc
ctggtttggcttttggggggcagggttactcacctttcccccaagaatgc
tatttttactgggctgttgggtcaaagtcatggcataaaccatgttggag
acgagttatctcaagtaatagctcaatttagtcgttttcatggtgtttcc
atggcaacacatagtgtttgtgtatgtgtgtgtg

gaattctctaacttttaaggaaggatgaggaacaggggctcagaagcctc
tgtgtctatgaaagaattactctctgctttctttgtatctcagtctgatt
attacagtaacgatcaacttaacgtcggtacagattcataaacactacat
tgcgttactggagacccacaccgggctcagtttggcacggtctgtaagct
ctgtcatgtgcggccatttcaaccctgcctctctgcagctctactcttgt
tacttgccttaacgtcatttaatgtgctcattattcacctaaagtatatt
tttcatcatctgtgctgacacaagagtccctttaacctgtagggcagctg
gaaacttccactctccttgcttcttatccaagcattgcctgtccccaaag
gagaggtctgactttccatgataaaacaaagaggtagggggaagaaaggc
aagcccagaaagagaggaaagaaggaagggaagaaagaggaaagaaggga
agaaaggatcagaaagaatgaaagaagggaaggggaaagggaggagaaac
agagagaaaggaagcaagcagagaggtgaaacaggagggaggagagagaa
gagaaagaagaaagagaaagagaaagagaagaagagtgtgcacgtattgt
tctggggctctgtcttggcttgtcacaactatttcactcaactgcaataa
tagtgccataaagttctaacatcagttccctcaacaacaagcctgccacc
cacacaactctgccactcaaacgccttgctagcttttctcgttagcttat
tatgatgggcctcttagtcaagtctcagtttgactaacctatattgccac
aggcaactggttagtcaactttcatcttatttaacaaaagcaatgaagtg
gccctgaacgatcctcctgcccccagtctcagctctcacagtctgccaga
catctggttaatcagctgtatctgcatcagggagcccctaggaccacagt
cactgtttttcagtcttcatataatgacgatatgcctgatgtatcagcat
cattccacacgattatagaaagacttatcatcgggtgtcaaatgcacatt
ctgaaagaaatgcctaggaaccttgtacgagaacctggaacatagggtga
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9391711_9392394
seq2: B6Ng01-301M03.b_46_729 (reverse)

seq1  CACACACACATACACAAACACTATGTGTTGCCATGGAAACACCATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACAAACACTATGTGTTGCCATGGAAACACCATGAAAA  50

seq1  CGACTAAATTGAGCTATTACTTGAGATAACTCGTCTCCAACATGGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAAATTGAGCTATTACTTGAGATAACTCGTCTCCAACATGGTTTAT  100

seq1  GCCATGACTTTGACCCAACAGCCCAGTAAAAATAGCATTCTTGGGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGACTTTGACCCAACAGCCCAGTAAAAATAGCATTCTTGGGGGAAA  150

seq1  GGTGAGTAACCCTGCCCCCCAAAAGCCAAACCAGGAAATACATGAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTAACCCTGCCCCCCAAAAGCCAAACCAGGAAATACATGAAATGG  200

seq1  AAACTTCAAATGGGACTTCTGTGTTTCCCTGCTCTGGGACTCTATAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAAATGGGACTTCTGTGTTTCCCTGCTCTGGGACTCTATAACCC  250

seq1  AGTTCACCTGAAAAACCTCTTTTATGTCTCTGTATTCCCTTACATGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACCTGAAAAACCTCTTTTATGTCTCTGTATTCCCTTACATGTCAG  300

seq1  GTATTGCTTGATCCTTGACTGATGTGACAAGGCAGTGAAGAAAGGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCTTGATCCTTGACTGATGTGACAAGGCAGTGAAGAAAGGACAGA  350

seq1  CACACATAAGGAAAGTCTGGGTCACATGGGCCATGCTTGGTCTTATGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAAGGAAAGTCTGGGTCACATGGGCCATGCTTGGTCTTATGAAG  400

seq1  TAATACTGACTAGGCACCAACTTGGAACCTCAGCATCTTTATTACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGACTAGGCACCAACTTGGAACCTCAGCATCTTTATTACACACA  450

seq1  GCACCAGAAGGCAGATAGCTGGTCTCAGTAGGAGGTCTCTGTAGTGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGAAGGCAGATAGCTGGTCTCAGTAGGAGGTCTCTGTAGTGGAGC  500

seq1  AGTCTTAAGTCCATCATCCTTCAGGAGGAAGAGGTAGTGTCTAGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAAGTCCATCATCCTTCAGGAGGAAGAGGTAGTGTCTAGTTTTTG  550

seq1  CACACACTGAGCAATCCTTTGAAAACACCTATAGTTGTACCAGAAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTGAGCAATCCTTTGAAAACACCTATAGTTGTACCAGAAGGCTT  600

seq1  TGCCCACCAAGCTTCTAAGCCTCCCCTGGAGGGAAGCTTTGCCGGTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCAAGCTTCTAAGCCTCCCCTGGAGGGAAGCTTTGCCGGTTCCC  650

seq1  AAGAGTCTGAGACACTGGTCCTTGTCAAGAATTC  684
      ||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTGAGACACTGGTCCTTGTCAAGAATTC  684


seq1: chr2_9281054_9282231
seq2: B6Ng01-301M03.g_65_1217

seq1  GAATTCTCTAACTTTTAAGGAAGGATGAGGAACAGGGGCTCAGAAGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACTTTTAAGGAAGGATGAGGAACAGGGGCTCAGAAGCCTC  50

seq1  TGTGTCTATGAAAGAATTACTCTCTGCTTTCTTTGTATCTCAGTCTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTATGAAAGAATTACTCTCTGCTTTCTTTGTATCTCAGTCTGATT  100

seq1  ATTACAGTAACGATCAACTTAACGTCGGTACAGATTCATAAACACTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAACGATCAACTTAACGTCGGTACAGATTCATAAACACTACAT  150

seq1  TGCGTTACTGGAGACCCACACCGGGCTCAGTTTGGCACGGTCTGTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTACTGGAGACCCACACCGGGCTCAGTTTGGCACGGTCTGTAAGCT  200

seq1  CTGTCATGTGCGGCCATTTCAACCCTGCCTCTCTGCAGCTCTACTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTGCGGCCATTTCAACCCTGCCTCTCTGCAGCTCTACTCTTGT  250

seq1  TACTTGCCTTAACGTCATTTAATGTGCTCATTATTCACCTAAAGTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTTAACGTCATTTAATGTGCTCATTATTCACCTAAAGTATATT  300

seq1  TTTCATCATCTGTGCTGACACAAGAGTCCCTTTAACCTGTAGGGCAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCATCTGTGCTGACACAAGAGTCCCTTTAACCTGTAGGGCAGCTG  350

seq1  GAAACTTCCACTCTCCTTGCTTCTTATCCAAGCATTGCCTGTCCCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCACTCTCCTTGCTTCTTATCCAAGCATTGCCTGTCCCCAAAG  400

seq1  GAGAGGTCTGACTTTCCATGATAAAACAAAGAGGTAGGGGGAAGAAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCTGACTTTCCATGATAAAACAAAGAGGTAGGGGGAAGAAAGGC  450

seq1  AAGCCCAGAAAGAGAGGAAAGAAGGAAGGGAAGAAAGAGGAAAGAAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAAAGAGAGGAAAGAAGGAAGGGAAGAAAGAGGAAAGAAGGGA  500

seq1  AGAAAGGATCAGAAAGAATGAAAGAAGGGAAGGGGAAAGGGAGGAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATCAGAAAGAATGAAAGAAGGGAAGGGGAAAGGGAGGAGAAAC  550

seq1  AGAGAGAAAGGAAGCAAGCAGAGAGGTGAAACAGGAGGGAGGAGAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGGAAGCAAGCAGAGAGGTGAAACAGGAGGGAGGAGAGAGAA  600

seq1  GAGAAAGAAGAAAGAGAAAGAGAAAGAGAAGAAGAGTGTGCACGTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGAAAGAGAAAGAGAAAGAGAAGAAGAGTGTGCACGTATTGT  650

seq1  TCTGGGGCTCTGTCTTGGCTTGTCACAACTATTTCACTCAACTGCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCTCTGTCTTGGCTTGTCACAACTATTTCACTCAACTGCAATAA  700

seq1  TAGTGCCATAAAGTTCTAACATCAGTTCCCTCAACAACAAGCCTGCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCATAAAGTTCTAACATCAGTTCCCTCAACAACAAGCCTGCCACC  750

seq1  CACACAACTCTGCCACTCAAACGCCTTGCTAGCTTTTCTCGTTAGCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACTCTGCCACTCAAACGCCTTGCTAGCTTTTCTCGTTAGCTTAT  800

seq1  TATGATGGGCCTCTTAGTCAAGTCTCAGTTTGACTAACCTATATTGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGGCCTCTTAGTCAAGTCTCAGTTTGACTAACCTATATTGCCAC  850

seq1  AGGCAACTGGTTAGTCAACTTTCATCTTATTTAACAAAAGCAATGAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTGGTTAGTCAACTTTCATCTTATTTAACAAAAGCAATGAAGTG  900

seq1  GCCCTGAACGATCCTCCTGCCCCCAGTCTCAGCTCTCACAGGTCCTGCCA  950
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  GCCCTGAACGATCCTCCTGCCCCCAGTCTCAGCTCTCACAG--TCTGCCA  948

seq1  GACAATCTGGTTAATCAGCTGTATCTGGCATCAGGGGAGCCCCTAGGACC  1000
      ||| |||||||||||||||||||||| |||||| ||||||||||||||||
seq2  GAC-ATCTGGTTAATCAGCTGTATCT-GCATCA-GGGAGCCCCTAGGACC  995

seq1  ACAGGTCACTGTTTTTTCAGTCCTTCATTATTAAATGACGGGATATGCCC  1050
      ||| ||||||| ||||||||| ||||| |||  ||||||  |||||||| 
seq2  ACA-GTCACTG-TTTTTCAGT-CTTCA-TAT--AATGAC--GATATGCC-  1036

seq1  TTGATTGTAATTCAGCATCCAATCCACACAGATATATAGAAAAGAACATA  1100
       ||| ||||  ||||||| || ||||||| ||| ||||||||   || ||
seq2  -TGA-TGTA--TCAGCAT-CATTCCACAC-GAT-TATAGAAA--GACTTA  1077

seq1  TCATTTGGGTGTTCAAATGCACA-TCTGGAAAAGAGATGCTCTAGGAA-C  1148
      ||| | ||||| ||||||||||| ||||  ||||| |||| ||||||| |
seq2  TCA-TCGGGTG-TCAAATGCACATTCTG--AAAGAAATGC-CTAGGAACC  1122

seq1  TTGTAAGAGAA-CTGGAGACCAAGGTGAGAA  1178
      ||||| ||||| |||||    | ||||||||
seq2  TTGTACGAGAACCTGGAACATAGGGTGAGAA  1153


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