BAC Information

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BAC

Clone NameB6Ng01-301N04
Chromosome2 (Build37)
Map Location 86,779,600 - 86,956,024
singlet/doubletdoublet
Overlap geneOlfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259
Upstream geneOlfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098
Downstream geneLOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301N04.bB6Ng01-301N04.g
ACCGA096037GA096038
length1,1201,105
definitionB6Ng01-301N04.b B6Ng01-301N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,779,600 - 86,780,734)(86,954,932 - 86,956,024)
sequence
gaattctatgagtgctgaggtggatcatttacaagttgtagaataggaac
ctttgttcagaatagactgcatgaaaaaaattttcaataaaactaatttt
ctcattgactttatttcttagagtttcccacatctgtgtaatagaggaga
tgcattggctgattccgaacttatgaagcctaatgtataatgtttaaagc
tttactaccaaaccaatggctttgtattttatgacagacaatgaaagctg
gggaatcatcagtattcataacacaaaggtaaaagtctgtgaaggacttt
ttgaattattttcttgctaattgtcattctccagtaatggcaaaactgtc
ctattttcctaactaccaaattgttaggaattatactgctagtaatacct
tcacaatttttctatgttgcaaatgctacctacactcataacacactcaa
aaggtatataccacaatctcatgtattctggatttttccatctattaagt
gttatcatggcccttagaggaacatctttgagaaaatctaactggtatac
tttgtacattttcctttttgtaaattttaggaagttgaaaggtatttgtt
gccctgaaccttttaattctttttaaaggggaagtaacagggaatccaac
tcctccattctcttgcagttgtgagtatttttctaatactattaaatttt
tttcagattctaataaaattgtacttaggcttgtttgcatcagttaacta
tttcactatattaacattgatttctaaacacaaaaggacttattcatatg
acctcagagaggcatgtataaaaccttcctaggttcaaatcagagtccca
tcagagagatgttaactgtttctgagagttgtttcactagctctcagaga
acatgaggtttcacaatgctttaacaaactttcagtatatctcaattctt
ttgcttgctctgtactccaaaaataagagtctagacttgactatagataa
gaagtgggtgtgtgcctctctgaaataatgcttctttttgtacaacaaat
caactggtgatgatggtccaccaccaggaccagaaaaaaatgcatctatt
ttatgatgcagtttaagttt
gaattcttgagaaatgttgaaattgtatgcctcccattagctgggatcct
cttgacttttgcaattactcttgtttgtttgtttgtttgtttgtttttca
aggcagggtttctctgtgtagtcctggctgtcctggaactcactctgtag
accagtctggcctcgaacttagaaatttgcctgcctctgcctcccaagtt
ctggaattaaagacttgtgccaccatgcccggccttgtaattactattaa
tgtgcctgtccttgtgctaagccacagtaagcatgtggtgactggttaga
caataaagaacttacttgggaagtaggagatatggtgatgttaaaaaaaa
tctagaaaaggtaggaaattttacataataatatctgagggtaatagaca
ttctaaaaactaaaatatttgtatttttacacattctttcaagaagtgaa
gactgaaatatgctattgaaaactgtgttacctatttttcattttgatga
aattctccaatatgtgtgattctaatttttaaaatgaattggaatctatg
agctattccaaattcttcttgcaatttaaaccattaccatgttttaaagt
gttatttattaattatacaagtgaaggagaaccacaatggaaaattacat
gttatatggtaatgagggaaataaaatctataatatatttatgatcatcc
acattgttagtttatgaaaattaaacaacaatgtaattgcaaactacata
atattttatgattttatatagtataatgtgtcccaaaagagtaaccattg
aagatttttacatggtgtcaaaataagaatgaatatactataggaaaaat
atatatagctacatcaattttgggagaaattttaattaatttcaatttgt
tttattaccacaacattataacaatcttcccaggtgacttccaaaggatt
acaacatcttgttctcaaatttctgctgttttattccaagtcttttatga
gcattaaagcagatgcttgattttatagaaattcagattcttttaaagat
tgttttgtgaaagataggattttttacttttttcaatttcttggccagaa
ggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_86779600_86780734
seq2: B6Ng01-301N04.b_47_1166

seq1  GAATTCTATGAGTGCTGAGGTGGATCATTTACAAGTTGTAGAATAGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAGTGCTGAGGTGGATCATTTACAAGTTGTAGAATAGGAAC  50

seq1  CTTTGTTCAGAATAGACTGCATGAAAAAAATTTTCAATAAAACTAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCAGAATAGACTGCATGAAAAAAATTTTCAATAAAACTAATTTT  100

seq1  CTCATTGACTTTATTTCTTAGAGTTTCCCACATCTGTGTAATAGAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGACTTTATTTCTTAGAGTTTCCCACATCTGTGTAATAGAGGAGA  150

seq1  TGCATTGGCTGATTCCGAACTTATGAAGCCTAATGTATAATGTTTAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGCTGATTCCGAACTTATGAAGCCTAATGTATAATGTTTAAAGC  200

seq1  TTTACTACCAAACCAATGGCTTTGTATTTTATGACAGACAATGAAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACCAAACCAATGGCTTTGTATTTTATGACAGACAATGAAAGCTG  250

seq1  GGGAATCATCAGTATTCATAACACAAAGGTAAAAGTCTGTGAAGGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCATCAGTATTCATAACACAAAGGTAAAAGTCTGTGAAGGACTTT  300

seq1  TTGAATTATTTTCTTGCTAATTGTCATTCTCCAGTAATGGCAAAACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTATTTTCTTGCTAATTGTCATTCTCCAGTAATGGCAAAACTGTC  350

seq1  CTATTTTCCTAACTACCAAATTGTTAGGAATTATACTGCTAGTAATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTAACTACCAAATTGTTAGGAATTATACTGCTAGTAATACCT  400

seq1  TCACAATTTTTCTATGTTGCAAATGCTACCTACACTCATAACACACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTTTTCTATGTTGCAAATGCTACCTACACTCATAACACACTCAA  450

seq1  AAGGTATATACCACAATCTCATGTATTCTGGATTTTTCCATCTATTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATATACCACAATCTCATGTATTCTGGATTTTTCCATCTATTAAGT  500

seq1  GTTATCATGGCCCTTAGAGGAACATCTTTGAGAAAATCTAACTGGTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGGCCCTTAGAGGAACATCTTTGAGAAAATCTAACTGGTATAC  550

seq1  TTTGTACATTTTCCTTTTTGTAAATTTTAGGAAGTTGAAAGGTATTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACATTTTCCTTTTTGTAAATTTTAGGAAGTTGAAAGGTATTTGTT  600

seq1  GCCCTGAACCTTTTAATTCTTTTTAAAGGGGAAGTAACAGGGAATCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAACCTTTTAATTCTTTTTAAAGGGGAAGTAACAGGGAATCCAAC  650

seq1  TCCTCCATTCTCTTGCAGTTGTGAGTATTTTTCTAATACTATTAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTCTCTTGCAGTTGTGAGTATTTTTCTAATACTATTAAATTTT  700

seq1  TTTCAGATTCTAATAAAATTGTACTTAGGCTTGTTTGCATCAGTTAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTCTAATAAAATTGTACTTAGGCTTGTTTGCATCAGTTAACTA  750

seq1  TTTCACTATATTAACATTGATTTCTAAACACAAAAGGACTTATTCATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATATTAACATTGATTTCTAAACACAAAAGGACTTATTCATATG  800

seq1  ACCTCAGAGAGGCATGTATAAAACCTTCCTAGGTTCAAATCAGAGTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAGAGGCATGTATAAAACCTTCCTAGGTTCAAATCAGAGTCCCA  850

seq1  TCAGAGAGATGTTAACTGTTTCTGAGAGTTGTTTCACTAGCTCTCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGATGTTAACTGTTTCTGAGAGTTGTTTCACTAGCTCTCAGAGA  900

seq1  ACATGAGGTTTCACAATGC-TTAACAAACTTCAGGTATATCTCAATTC-T  948
      ||||||||||||||||||| |||||||||||   |||||||||||||| |
seq2  ACATGAGGTTTCACAATGCTTTAACAAACTTTCAGTATATCTCAATTCTT  950

seq1  TTGCTTGCTCTTGTACTCCAAAAATAAGAGGTCTAGACTTGACTATAGAT  998
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TTGCTTGCTC-TGTACTCCAAAAATAAGA-GTCTAGACTTGACTATAGAT  998

seq1  AAGAAGTGGGTGTGTGCCCTCTTCCTGAAATAATGCTTCTTTTGTAACAA  1048
      |||||||||||||||| |||||  |||||||||||||||||||   ||||
seq2  AAGAAGTGGGTGTGTG-CCTCT--CTGAAATAATGCTTCTTTTTGTACAA  1045

seq1  CAAATCCAAACTGGTGATTGATGGGTCCCAACAACCCAGGACCCAGAAAA  1098
      ||||||  ||||||||| ||||||   ||| ||  |||||| |||| |||
seq2  CAAATC--AACTGGTGA-TGATGG--TCCACCA--CCAGGA-CCAG-AAA  1086

seq1  AAAATGCAATCTATTTTTATGAATGCAGTTTTAGTTT  1135
      ||||||| ||||| ||||||| ||||||||| |||||
seq2  AAAATGC-ATCTA-TTTTATG-ATGCAGTTTAAGTTT  1120

seq1: chr2_86954932_86956024
seq2: B6Ng01-301N04.g_67_1171 (reverse)

seq1  TTTCTTTCTG--CAAGAA--TG-AAAAAGTAAAA---TCTATCTTTCACA  42
      |||| |||||  ||||||  || |||||||||||    ||||||||||||
seq2  TTTCCTTCTGGCCAAGAAATTGAAAAAAGTAAAAAATCCTATCTTTCACA  50

seq1  AA--CATCTTT-AAAGAATCTGGAATTTTCTATAAATTCAAGCATCTTGC  89
      ||   |||||| ||||||||||  | |||||||||| ||||||||| |||
seq2  AAACAATCTTTAAAAGAATCTG--AATTTCTATAAAATCAAGCATC-TGC  97

seq1  TTTAATGCTCAATAAAGACTTGGAATAAAACAGCAG-AATTTGAGAACAA  138
      |||||||||||  ||||||||||||||||||||||| ||||||||||| |
seq2  TTTAATGCTCATAAAAGACTTGGAATAAAACAGCAGAAATTTGAGAAC-A  146

seq1  AGATGTTGTAATCCTTTGGAAGTCA-CTTGGAAGATTGTTATAATGTTGT  187
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  AGATGTTGTAATCCTTTGGAAGTCACCTGGGAAGATTGTTATAATGTTGT  196

seq1  GGTAATAAAAC-AATTGAAATTAATTAAAATTTCT-CCAAAATTGATGTA  235
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GGTAATAAAACAAATTGAAATTAATTAAAATTTCTCCCAAAATTGATGTA  246

seq1  GCTATATATATTTTTCCTATAGTATATTCATTCTTATTTTGACACCATGT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATATATTTTTCCTATAGTATATTCATTCTTATTTTGACACCATGT  296

seq1  -AAAATCTTCAATGGTTACTCTTTTGGGACACATTATACTATATAAAATC  334
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTCAATGGTTACTCTTTTGGGACACATTATACTATATAAAATC  346

seq1  ATAAAATATTATGTAGTTTGCAATTACATTGTTGTTTAATTTTCATAAAC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTATGTAGTTTGCAATTACATTGTTGTTTAATTTTCATAAAC  396

seq1  TAACAATGTGGATGATCATAAATATATTATAGATTTTATTTCCCTCATTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGTGGATGATCATAAATATATTATAGATTTTATTTCCCTCATTA  446

seq1  CCATATAACATGTAATTTTCCATTGTGGTTCTCCTTCACTTGTATAATTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAACATGTAATTTTCCATTGTGGTTCTCCTTCACTTGTATAATTA  496

seq1  ATAAATAACACTTTAAAACATGGTAATGGTTTAAATTGCAAGAAGAATTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAACACTTTAAAACATGGTAATGGTTTAAATTGCAAGAAGAATTT  546

seq1  GGAATAGCTCATAGATTCCAATTCATTTTAAAAATTAGAATCACACATAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGCTCATAGATTCCAATTCATTTTAAAAATTAGAATCACACATAT  596

seq1  TGGAGAATTTCATCAAAATGAAAAATAGGTAACACAGTTTTCAATAGCAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATTTCATCAAAATGAAAAATAGGTAACACAGTTTTCAATAGCAT  646

seq1  ATTTCAGTCTTCACTTCTTGAAAGAATGTGTAAAAATACAAATATTTTAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTCTTCACTTCTTGAAAGAATGTGTAAAAATACAAATATTTTAG  696

seq1  TTTTTAGAATGTCTATTACCCTCAGATATTATTATGTAAAATTTCCTACC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAATGTCTATTACCCTCAGATATTATTATGTAAAATTTCCTACC  746

seq1  TTTTCTAGATTTTTTTTAACATCACCATATCTCCTACTTCCCAAGTAAGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGATTTTTTTTAACATCACCATATCTCCTACTTCCCAAGTAAGT  796

seq1  TCTTTATTGTCTAACCAGTCACCACATGCTTACTGTGGCTTAGCACAAGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGTCTAACCAGTCACCACATGCTTACTGTGGCTTAGCACAAGG  846

seq1  ACAGGCACATTAATAGTAATTACAAGGCCGGGCATGGTGGCACAAGTCTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACATTAATAGTAATTACAAGGCCGGGCATGGTGGCACAAGTCTT  896

seq1  TAATTCCAGAACTTGGGAGGCAGAGGCAGGCAAATTTCTAAGTTCGAGGC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAGAACTTGGGAGGCAGAGGCAGGCAAATTTCTAAGTTCGAGGC  946

seq1  CAGACTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAA  996

seq1  ACCCTGCCTTGAAAAACAAACAAACAAACAAACAAACAAGAGTAATTGCA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCTTGAAAAACAAACAAACAAACAAACAAACAAGAGTAATTGCA  1046

seq1  AAAGTCAAGAGGATCCCAGCTAATGGGAGGCATACAATTTCAACATTTCT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGAGGATCCCAGCTAATGGGAGGCATACAATTTCAACATTTCT  1096

seq1  CAAGAATTC  1093
      |||||||||
seq2  CAAGAATTC  1105