BAC Information

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BAC

Clone NameB6Ng01-301O17
Chromosome2 (Build37)
Map Location 164,761,927 - 164,868,223
singlet/doubletdoublet
Overlap geneMmp9, Slc12a5, Ncoa5
Upstream geneYwhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777
Downstream geneCd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301O17.bB6Ng01-301O17.g
ACCGA096107GA096108
length1,141553
definitionB6Ng01-301O17.b B6Ng01-301O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,867,077 - 164,868,223)(164,761,927 - 164,762,485)
sequence
gaattcacatcttttgagtctcagtttacccatctgtaaaatggaaggaa
gaatcactgtttttatatgggacatattgatagcaaagatcccaccacaa
gcaaactgccttatgcccttgggtaattatctgctcctctgagacacagt
attctcatccagaaactgggagagcaatatctgtgtttcatgtagttaaa
gagtatgtatacagtgctcggcaaagttcctgtctcaaagagcaccctca
gtctctcatctaccccaagagaggtcaccattggtgactagctttgtttc
taagtgttagtgtgcttgcgacctcctcgggctgtctggagaagtcaaaa
actttccaaggaagaaggcattgtgggaatgtgacagccagctctaacct
gtttttgcctgcccagaaatgaactgctctattccagtcactagagctca
gacctgagagataattcacacaggtccctgtgacgactagagagactttc
tgtggaggcaggcatccatcccttacggccattgaccttttgctctggaa
tgctgaggagatctcagtagcctgcaggtgagatgagaaagggatagtgg
gccctgaggtgttaatagctaccattgcttctgtaaaacctgcttctcgc
tgtagagaagggatggaacggtcttttattaatatatagaggggaagaaa
gaaagaagtggggaaagaaaaatggattttcctgcccagctgggaattcc
atgggtcattgtaacacatgcctttctgacattcgtcctcaaactcacct
gaaccctcttccacatggctgtggctctaaaggctgccgtccttctggta
gcagtgagaatagattcaattcatctgagtttgaattgagtctgagtctc
tgatttctccaagtgggttcaaacactacaccatgatagtgtcacgaaga
aaagtagttatacagacagacgatcgtcaaattatgacatagcatggtgg
tctggtgctctgtgctgctcatattaaatgactgatctggcggcaagtct
ccatcatgaaatgtagacaggtggggacagtatggtaagaacgtgttctg
caagtagcagcgtggcttgttattccctgctactccactca
caggacatcataactatacagagaaaccctgtctcaaaaaaaccaaaacc
gccgggcagtggtggcatactcctttaatcccagcacttggaaggtagag
gcaggtggatttctgagttcaaggccagcctggtctacagagtgagttcc
agcacagccagggctacacagagaaacccccaccctcccacacacataca
cagggtctcagaaatgaacccaggattttgtttttaacaggagtggtgag
gccaattgtagagtttgttttgttgggtgtagtggcttgcacctttaatc
ccaggaagcaaaagcgggcagatctcttaggccagcctagtctacctaga
gagttacaggttagccaagactatccagtgagaccatacttttaaaataa
gtaaataaattaaaaaataaagaaggggtgggggaaagagattgctattt
accgttcgctggatgaacagttttggcagtcctcctgcctcagcttcctg
agtgctgggactacaggaacaaacaagtggctgtggggtggtgtgtgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164867077_164868223
seq2: B6Ng01-301O17.b_43_1183 (reverse)

seq1  TGAGT-GAGTAGCAGGG-ATAACAGCCCACGCTGCTAACCTGCAGACACC  48
      ||||| ||||||||||| ||||||  |||||||||| || ||||||   |
seq2  TGAGTGGAGTAGCAGGGAATAACAAGCCACGCTGCT-ACTTGCAGAACAC  49

seq1  TTTCTTACATTACTGTCCCCACTTGTCCTTACATTTTCATGATGGAGGAC  98
       |||||||  |||||||||||| ||||  |||| |||||||||||| |||
seq2  GTTCTTACCATACTGTCCCCACCTGTC--TACA-TTTCATGATGGA-GAC  95

seq1  TTGCCGCCAGATCAGTCATTTAATTAATGAGCAAGCACAGAGCACCAGAC  148
      ||||||||||||||||||||||||  |||||| |||||||||||||||||
seq2  TTGCCGCCAGATCAGTCATTTAAT--ATGAGC-AGCACAGAGCACCAGAC  142

seq1  CA-CATGCTTATTGTCATAATTTGACGATCGTCTGTCTGTATAACTACTT  197
      || ||||||   ||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCT--ATGTCATAATTTGACGATCGTCTGTCTGTATAACTACTT  190

seq1  TTCTTCGTGACACTATCATGGTGTAGTGTTTGAACCCACTTGGAGAAATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGTGACACTATCATGGTGTAGTGTTTGAACCCACTTGGAGAAATC  240

seq1  AGAGACTCAGACTCAATTCAAACTCAGATGAATTGAATCTATTCTCACTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCAGACTCAATTCAAACTCAGATGAATTGAATCTATTCTCACTG  290

seq1  CTACCAGAAGGACGGCAGCC-TTAGAGCCACAGCCATGTGGAAGAGGGTT  346
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTACCAGAAGGACGGCAGCCTTTAGAGCCACAGCCATGTGGAAGAGGGTT  340

seq1  CAGGTGAGTTTGAGGACGAATGTCAGAAAGGCATGTGTTACAATGACCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGTTTGAGGACGAATGTCAGAAAGGCATGTGTTACAATGACCCA  390

seq1  TGGAATTCCCAGCTGGGCAGGAAAATCCATTTTTCTTTCCCCACTTCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCCAGCTGGGCAGGAAAATCCATTTTTCTTTCCCCACTTCTTT  440

seq1  CTTTCTTCCCCTCTATATATTAATAAAAGACCGTTCCATCCCTTCTCTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCCCTCTATATATTAATAAAAGACCGTTCCATCCCTTCTCTAC  490

seq1  AGCGAGAAGCAGGTTTTACAGAAGCAATGGTAGCTATTAACACCTCAGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGAAGCAGGTTTTACAGAAGCAATGGTAGCTATTAACACCTCAGGG  540

seq1  CCCACTATCCCTTTCTCATCTCACCTGCAGGCTACTGAGATCTCCTCAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATCCCTTTCTCATCTCACCTGCAGGCTACTGAGATCTCCTCAGC  590

seq1  ATTCCAGAGCAAAAGGTCAATGGCCGTAAGGGATGGATGCCTGCCTCCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAGCAAAAGGTCAATGGCCGTAAGGGATGGATGCCTGCCTCCAC  640

seq1  AGAAAGTCTCTCTAGTCGTCACAGGGACCTGTGTGAATTATCTCTCAGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCTCTCTAGTCGTCACAGGGACCTGTGTGAATTATCTCTCAGGT  690

seq1  CTGAGCTCTAGTGACTGGAATAGAGCAGTTCATTTCTGGGCAGGCAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTAGTGACTGGAATAGAGCAGTTCATTTCTGGGCAGGCAAAAA  740

seq1  CAGGTTAGAGCTGGCTGTCACATTCCCACAATGCCTTCTTCCTTGGAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAGAGCTGGCTGTCACATTCCCACAATGCCTTCTTCCTTGGAAAG  790

seq1  TTTTTGACTTCTCCAGACAGCCCGAGGAGGTCGCAAGCACACTAACACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTTCTCCAGACAGCCCGAGGAGGTCGCAAGCACACTAACACTT  840

seq1  AGAAACAAAGCTAGTCACCAATGGTGACCTCTCTTGGGGTAGATGAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAGCTAGTCACCAATGGTGACCTCTCTTGGGGTAGATGAGAGA  890

seq1  CTGAGGGTGCTCTTTGAGACAGGAACTTTGCCGAGCACTGTATACATACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTGCTCTTTGAGACAGGAACTTTGCCGAGCACTGTATACATACT  940

seq1  CTTTAACTACATGAAACACAGATATTGCTCTCCCAGTTTCTGGATGAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTACATGAAACACAGATATTGCTCTCCCAGTTTCTGGATGAGAA  990

seq1  TACTGTGTCTCAGAGGAGCAGATAATTACCCAAGGGCATAAGGCAGTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTCTCAGAGGAGCAGATAATTACCCAAGGGCATAAGGCAGTTTG  1040

seq1  CTTGTGGTGGGATCTTTGCTATCAATATGTCCCATATAAAAACAGTGATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTGGGATCTTTGCTATCAATATGTCCCATATAAAAACAGTGATT  1090

seq1  CTTCCTTCCATTTTACAGATGGGTAAACTGAGACTCAAAAGATGTGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCATTTTACAGATGGGTAAACTGAGACTCAAAAGATGTGAATT  1140

seq1  C  1147
      |
seq2  C  1141

seq1: chr2_164761927_164762485
seq2: B6Ng01-301O17.g_69_627

seq1  GAATTCCAGGACATCAGAACTATACAGAGAAACCCTGTCTCAAAAAAACC  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATCATAACTATACAGAGAAACCCTGTCTCAAAAAAACC  50

seq1  AAAACCGCCGGGCAGTGGTGGCATACTCCTTTAATCCCAGCACTTGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGCCGGGCAGTGGTGGCATACTCCTTTAATCCCAGCACTTGGAAG  100

seq1  GTAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTG  150

seq1  AGTTCCAGCACAGCCAGGGCTACACAGAGAAACCCCCACCCTCCCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCACAGCCAGGGCTACACAGAGAAACCCCCACCCTCCCACACA  200

seq1  CATACACAGGGTCTCAGAAATGAACCCAGGATTTTGTTTTTAACAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGGGTCTCAGAAATGAACCCAGGATTTTGTTTTTAACAGGAGT  250

seq1  GGTGAGGCCAATTGTAGAGTTTGTTTTGTTGGGTGTAGTGGCTTGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCCAATTGTAGAGTTTGTTTTGTTGGGTGTAGTGGCTTGCACCT  300

seq1  TTAATCCCAGGAAGCAAAAGCGGGCAGATCTCTTAGGCCAGCCTAGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGGAAGCAAAAGCGGGCAGATCTCTTAGGCCAGCCTAGTCTA  350

seq1  CCTAGAGAGTTACAGGTTAGCCAAGACTATCCAGTGAGACCATACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGTTACAGGTTAGCCAAGACTATCCAGTGAGACCATACTTTTA  400

seq1  AAATAAGTAAATAAATTAAAAAATAAAGAAGGGGTGGGGGAAAGAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAAATAAATTAAAAAATAAAGAAGGGGTGGGGGAAAGAGATTG  450

seq1  CTATTTACCGTTCGCTGGATGAACAGTTTTGGCAGTCCTCCTGCCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCGTTCGCTGGATGAACAGTTTTGGCAGTCCTCCTGCCTCAGC  500

seq1  TTCCTGAGTGCTGGGACTACAGGAACAAACAAGTGGCTGTGGGGTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGTGCTGGGACTACAGGAACAAACAAGTGGCTGTGGGGTGGTGT  550

seq1  GTGTGTGTG  559
      |||||||||
seq2  GTGTGTGTG  559