BAC Information

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BAC

Clone NameB6Ng01-302G11
Chromosome2 (Build37)
Map Location 108,424,351 - 108,558,890
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043078, LOC668790
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302G11.bB6Ng01-302G11.g
ACCGA096459GA096460
length1,046323
definitionB6Ng01-302G11.b B6Ng01-302G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,424,351 - 108,425,405)(108,558,562 - 108,558,890)
sequence
gaattctcaggtggcctgggaagtgcaaacctgggtagatcctacaccag
tagcagagcctcctcttattatctggggaatgtcactgaaccataatagt
gtttccctacaaactgtaattggagtaggtacttggaatttggggagtga
cagcctattaacagctctaacaataggaaaactgagtatgtctccagcct
tcattgaagcaggaagaaaatgaatactattgactactcttaaatgccaa
agaactttcttgaccttcagcttttattaactcatttttttttccttagg
tgtaggtattttttgaatgtagctatttaaaaaactttcaaaaaggaaaa
tttatatttaaactcacataaatgaatattttaaacctatgcctaattta
ttccagattattgttgttatggttttcccaatacatctgtttttgcaatt
acatattgaggtagggagtgaatttatagcattgatggagaaaggatcta
ttgcatgcatggtacacaattagcctctggtttagtagtagaattgccag
agagaaaaacaacatgaggctactgatagattatcctgcatctaatgagc
aggccttaggatatgtttggactcctcagtatcattggcagttcattcta
tttgagcagccatagataaaatgtagagaaactctgtgctctaatttggc
ttttaagtaaagtttccatgaattctcatctgtaaggcaaggcagattca
acaaatctcttaggacagcctctggtgtaggcaaacaatctggcaccaaa
tgcaaacacccccattcatcccacatttgtgtgctgagtcaaaatgctat
aggaatataaatttctgcccagctaactccagagtttcttgcatgttttc
agagatcctttagtgaggtgctgtcccaattttccctattctgtactatg
gggcagattgccttacagtacaaatcattatcaaatagacctgggatttg
acagtgccttcatcagcatctcaatgcactagctgatgctagcaaa

gaattctctgctttggctaaggcaaaactgtactgtgtaatactcctttt
gcttccttctagccaggagtagaatgtagagaagaagcaaagtgaaagaa
taacaatgtctagcttttcaagtgtttggttgtcacaccgtactggcatc
aggtaatatttgaatgcactctaggctacacacacacacacacacacaca
cacacacacacacacacacacactacatacctctgtatacatggatatgt
gtactagatctgtatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108424351_108425405
seq2: B6Ng01-302G11.b_45_1090

seq1  GAATTCTCAGGTGGCCTGGGAAGTGCAAACCTGGGTAGATCCTACACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTGGCCTGGGAAGTGCAAACCTGGGTAGATCCTACACCAG  50

seq1  TAGCAGAGCCTCCTCTTATTATCTGGGGAATGTCACTGAACCATAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGCCTCCTCTTATTATCTGGGGAATGTCACTGAACCATAATAGT  100

seq1  GTTTCCCTACAAACTGTAATTGGAGTAGGTACTTGGAATTTGGGGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTACAAACTGTAATTGGAGTAGGTACTTGGAATTTGGGGAGTGA  150

seq1  CAGCCTATTAACAGCTCTAACAATAGGAAAACTGAGTATGTCTCCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATTAACAGCTCTAACAATAGGAAAACTGAGTATGTCTCCAGCCT  200

seq1  TCATTGAAGCAGGAAGAAAATGAATACTATTGACTACTCTTAAATGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAGCAGGAAGAAAATGAATACTATTGACTACTCTTAAATGCCAA  250

seq1  AGAACTTTCTTGACCTTCAGCTTTTATTAACTCATTTTTTTTTCCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCTTGACCTTCAGCTTTTATTAACTCATTTTTTTTTCCTTAGG  300

seq1  TGTAGGTATTTTTTGAATGTAGCTATTTAAAAAACTTTCAAAAAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTATTTTTTGAATGTAGCTATTTAAAAAACTTTCAAAAAGGAAAA  350

seq1  TTTATATTTAAACTCACATAAATGAATATTTTAAACCTATGCCTAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTAAACTCACATAAATGAATATTTTAAACCTATGCCTAATTTA  400

seq1  TTCCAGATTATTGTTGTTATGGTTTTCCCAATACATCTGTTTTTGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTATTGTTGTTATGGTTTTCCCAATACATCTGTTTTTGCAATT  450

seq1  ACATATTGAGGTAGGGAGTGAATTTATAGCATTGATGGAGAAAGGATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGAGGTAGGGAGTGAATTTATAGCATTGATGGAGAAAGGATCTA  500

seq1  TTGCATGCATGGTACACAATTAGCCTCTGGTTTAGTAGTAGAATTGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCATGGTACACAATTAGCCTCTGGTTTAGTAGTAGAATTGCCAG  550

seq1  AGAGAAAAACAACATGAGGCTACTGATAGATTATCCTGCATCTAATGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAACAACATGAGGCTACTGATAGATTATCCTGCATCTAATGAGC  600

seq1  AGGCCTTAGGATATGTTTGGACTCCTCAGTATCATTGGCAGTTCATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAGGATATGTTTGGACTCCTCAGTATCATTGGCAGTTCATTCTA  650

seq1  TTTGAGCAGCCATAGATAAAATGTAGAGAAACTCTGTGCTCTAATTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCAGCCATAGATAAAATGTAGAGAAACTCTGTGCTCTAATTTGGC  700

seq1  TTTTAAGTAAAGTTTCCATGAATTCTCATCTGTAAGGCAAGGCAGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAAAGTTTCCATGAATTCTCATCTGTAAGGCAAGGCAGATTCA  750

seq1  ACAAATCTCTTAGGACAGCCTCTGGTGTAGGCAAACAATCTGGCACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTCTTAGGACAGCCTCTGGTGTAGGCAAACAATCTGGCACCAAA  800

seq1  TGCAAACACCCCCATTCATCCCACATTTGTGTGCTGAGTCAAAATGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACCCCCATTCATCCCACATTTGTGTGCTGAGTCAAAATGCTAT  850

seq1  AGGAATATAAATTTCTGCCCAGCTAACTCCAGAGTTTCTTGCATGTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAAATTTCTGCCCAGCTAACTCCAGAGTTTCTTGCATGTTTTC  900

seq1  AGAGATCCTTTAGTGAGGTGCTGTCCCAATTTTCCCTATTCTGTACTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AGAGATCCTTTAGTGAGGTGCTGTCCCAATTTTCCCTATTCTGTACTATG  950

seq1  GGGCAGATTGCCTTACAAGTACAAATCATTATCAAAATAGACCTGGGATT  1000
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GGGCAGATTGCCTTAC-AGTACAAATCATTATC-AAATAGACCTGGGATT  998

seq1  TGACAGTGCCTTTCATCAGCAATCTCAAATGCACTAGGCTGGATGCTAAG  1050
      |||||||||| ||||||||| ||||| ||||||||| ||| |||||||  
seq2  TGACAGTGCC-TTCATCAGC-ATCTC-AATGCACTA-GCT-GATGCTA--  1041

seq1  GCAAA  1055
      |||||
seq2  GCAAA  1046


seq1: chr2_108558562_108558890
seq2: B6Ng01-302G11.g_67_389 (reverse)

seq1  ATATATATATATATATACATACATATATATATATATATATATATATATAT  50
      ||||||||||||||||      ||||||||||||||||||||||||||||
seq2  ATATATATATATATAT------ATATATATATATATATATATATATATAT  44

seq1  ATATATATATATATATACAGATCTAGTACACATATCCATGTATACAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATACAGATCTAGTACACATATCCATGTATACAGAGG  94

seq1  TATGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  144

seq1  GTAGCCTAGAGTGCATTCAAATATTACCTGATGCCAGTACGGTGTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTAGAGTGCATTCAAATATTACCTGATGCCAGTACGGTGTGACAA  194

seq1  CCAAACACTTGAAAAGCTAGACATTGTTATTCTTTCACTTTGCTTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACTTGAAAAGCTAGACATTGTTATTCTTTCACTTTGCTTCTTCT  244

seq1  CTACATTCTACTCCTGGCTAGAAGGAAGCAAAAGGAGTATTACACAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCTACTCCTGGCTAGAAGGAAGCAAAAGGAGTATTACACAGTAC  294

seq1  AGTTTTGCCTTAGCCAAAGCAGAGAATTC  329
      |||||||||||||||||||||||||||||
seq2  AGTTTTGCCTTAGCCAAAGCAGAGAATTC  323


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