BAC Information

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BAC

Clone NameB6Ng01-302K12
Chromosome2 (Build37)
Map Location 117,302,787 - 117,418,675
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302K12.bB6Ng01-302K12.g
ACCGA096650GA096651
length1,1121,095
definitionB6Ng01-302K12.b B6Ng01-302K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,302,787 - 117,303,878)(117,417,587 - 117,418,675)
sequence
gaattcatgagtgctgtggtcctgatgtatccagaagataattatgccta
ggccctcccaacctctgactcttagtctttctgccacttcttctgcaatg
ttgagacagaagccattcttaagtgaaaagctgtatgggaggtcaaactg
ctgcagatacacagcgagaagaggctgtggtagtcgctggctgatggatg
ttcaattgaaagagaggtgtgaggatttctatggagctttgctgattcag
tcatgaggaggaaaagaacccactaaacatggagaaaatgtgaacagacg
tgtgttcagagaagatacgcaagtgaccaatgaaacacatgggaagctac
tcaatttcattagctaagcacagtaaaacaattacaaggggataattcct
cgaccttggggatggctacagtctggaagacaatgagcatggtacctatg
tggtgaaacagcaacccctgatgattggtgaagctgcttgtcacaagttg
gatggtgaaattgactggcagccaggagtacagcaccagtgctgaaaacc
cactctgtatatccacgccgacatgtgcgcctggcatcgctctagacaaa
gcccgcgaggaagagcatcctgtggaagcacagttgcatcacagagtaaa
cactgcgctcaaataccaccacagcccagggcttttccaaagcaagcttc
tgtcatctgtcatcatcagccttagacagctctgtgtttgtgctgcctca
gggctcctcttaccctgagatgtagggagtctgtagggagtcttctggta
aaatgcagtcgatttccaaggccgtgtgcgtctcgggttttattcccctt
ccacatgaggggagagcagaacaaactgaagagacaaaatctctaactgc
tctttcaatctagttcctggttctttctcccttttctttctctttttctg
tctgtctctcaaaagtttttgcgattagtgagaatgctctgcagagagaa
agcagtttgttgctaaccttggcaacttggagtttgatttcccagaagcc
tatgggtgaaaaggaaaaggagcaaactctacaaactttccttcttggct
caaatgccatgg
gaattcaggggtgacctccttcacatatttttctggatgttcccctgaaa
catctcagtcttgtggcctagcttgaatttctccacctgtgtgtagataa
gatccctgtctattctttgcttgaatctctggtctgagaacctccttgat
aaaattctcctttaccttgatgatcagctgcacccagaacagtgccagat
acaaagtaagaatccaagaacatggaatatgagttgaatgattcttagga
aggcctcagtttccagggtcagcattgtagaaaatccccttactagggct
tttttgtttgtttttgtttgtttgtttttgagacagggtttctctgtgta
gtcctggttgtcctggaactcactctgtagaccaggctggcctcgaactc
agaaattcacctgcctctgcctcactagtgctgggattaaaagcgtgcac
caccacgcccggctactagggctattaatacttaatttccaagtatagtc
ttgagaaatgtgtgtccttgtaagagttatgaaaatgccatactgtgtag
agctatctatgatgtgtcatttttttttccattttccatctgtgtctcct
ttggctataaacagtatctcacttcttattgagaaatgaacacagcaaat
cgacttcgtatttctgtcatcagggtcccagtacatattctccaaaagaa
agaaaaagggaaatcagaagcagggtgtaaaagtcattgagaatttgtga
aggtcccaatgatccctacagaaataaatatttgagaactaactttgaac
tttagcacccaacagttttttttttttttatgttctgtacaatgataaaa
taaaggctccagttctataaaaccagaaatgtctttctaggcttttattt
tcatatcagaaaagcaataaggttcataaatgtctctgtgaagtttgaat
gtaataaaatttcagctataaattatttttatgtgcagcaagcttcaaac
tcgaagcactgactgttgttggacaggctcttgccacatactgcaagagt
catgtattgtctgaccttaagctgtatccacaactcagaaagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_117302787_117303878
seq2: B6Ng01-302K12.b_46_1157

seq1  GAATTCATGAGTGCTGTGGTCCTGATGTATCCAGAAGATAATTATGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTGCTGTGGTCCTGATGTATCCAGAAGATAATTATGCCTA  50

seq1  GGCCCTCCCAACCTCTGACTCTTAGTCTTTCTGCCACTTCTTCTGCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCCAACCTCTGACTCTTAGTCTTTCTGCCACTTCTTCTGCAATG  100

seq1  TTGAGACAGAAGCCATTCTTAAGTGAAAAGCTGTATGGGAGGTCAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGAAGCCATTCTTAAGTGAAAAGCTGTATGGGAGGTCAAACTG  150

seq1  CTGCAGATACACAGCGAGAAGAGGCTGTGGTAGTCGCTGGCTGATGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATACACAGCGAGAAGAGGCTGTGGTAGTCGCTGGCTGATGGATG  200

seq1  TTCAATTGAAAGAGAGGTGTGAGGATTTCTATGGAGCTTTGCTGATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGAAAGAGAGGTGTGAGGATTTCTATGGAGCTTTGCTGATTCAG  250

seq1  TCATGAGGAGGAAAAGAACCCACTAAACATGGAGAAAATGTGAACAGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGAGGAAAAGAACCCACTAAACATGGAGAAAATGTGAACAGACG  300

seq1  TGTGTTCAGAGAAGATACGCAAGTGACCAATGAAACACATGGGAAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGAGAAGATACGCAAGTGACCAATGAAACACATGGGAAGCTAC  350

seq1  TCAATTTCATTAGCTAAGCACAGTAAAACAATTACAAGGGGATAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCATTAGCTAAGCACAGTAAAACAATTACAAGGGGATAATTCCT  400

seq1  CGACCTTGGGGATGGCTACAGTCTGGAAGACAATGAGCATGGTACCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTGGGGATGGCTACAGTCTGGAAGACAATGAGCATGGTACCTATG  450

seq1  TGGTGAAACAGCAACCCCTGATGATTGGTGAAGCTGCTTGTCACAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAACAGCAACCCCTGATGATTGGTGAAGCTGCTTGTCACAAGTTG  500

seq1  GATGGTGAAATTGACTGGCAGCCAGGAGTACAGCACCAGTGCTGAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAAATTGACTGGCAGCCAGGAGTACAGCACCAGTGCTGAAAACC  550

seq1  CACTCTGTATATCCACGCCGACATGTGCGCCTGGCATCGCTCTAGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTATATCCACGCCGACATGTGCGCCTGGCATCGCTCTAGACAAA  600

seq1  GCCCGCGAGGAAGAGCATCCTGTGGAAGCACAGTTGCATCACAGAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCGAGGAAGAGCATCCTGTGGAAGCACAGTTGCATCACAGAGTAAA  650

seq1  CACTGCGCTCAAATACCACCACAGCCCAGGGCTTTTCCAAAGCAAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCGCTCAAATACCACCACAGCCCAGGGCTTTTCCAAAGCAAGCTTC  700

seq1  TGTCATCTGTCATCATCAGCCTTAGACAGCTCTGTGTTTGTGCTGCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGTCATCATCAGCCTTAGACAGCTCTGTGTTTGTGCTGCCTCA  750

seq1  GGGCTCCTCTTACCCTGAGATGTAGGGAGTCTGTAGGGAGTCTTCTGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTCTTACCCTGAGATGTAGGGAGTCTGTAGGGAGTCTTCTGGTA  800

seq1  AAATGCAGTCGA-TTCCAAGGCCGTGTGCGTCTCGGG-TTTATTCCCCTT  848
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  AAATGCAGTCGATTTCCAAGGCCGTGTGCGTCTCGGGTTTTATTCCCCTT  850

seq1  CCACATGAGGGGAGAGCAGAACAAACTGAAGAGAC-AAATCTCTAACTGC  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCACATGAGGGGAGAGCAGAACAAACTGAAGAGACAAAATCTCTAACTGC  900

seq1  TCTTTCAATCTAGTTCCTGGCTCTTTCTCCC-TTTCTTTCTCTTTTTCTG  946
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TCTTTCAATCTAGTTCCTGGTTCTTTCTCCCTTTTCTTTCTCTTTTTCTG  950

seq1  TCTGTCTCTCAAAAG-TTTTGCGA-TAGTGAG-ATGCTCTGCAGAGAG-A  992
      ||||||||||||||| |||||||| ||||||| ||||||||||||||| |
seq2  TCTGTCTCTCAAAAGTTTTTGCGATTAGTGAGAATGCTCTGCAGAGAGAA  1000

seq1  AGCAGTT--GTGCAAACC-TGGCAACCT-GAGTTTGA-TTCCCAGAA-CC  1036
      |||||||   ||| |||| ||||||| | |||||||| ||||||||| ||
seq2  AGCAGTTTGTTGCTAACCTTGGCAACTTGGAGTTTGATTTCCCAGAAGCC  1050

seq1  CAT-GGTGAAA--GGAGAGGAGC-AACTCTACAAACTTTCC-TCTGGCTT  1081
       || |||||||  | | |||||| ||||||||||||||||| ||| |  |
seq2  TATGGGTGAAAAGGAAAAGGAGCAAACTCTACAAACTTTCCTTCTTGGCT  1100

seq1  CAAATG-CATGG  1092
      |||||| |||||
seq2  CAAATGCCATGG  1112

seq1: chr2_117417587_117418675
seq2: B6Ng01-302K12.g_66_1160 (reverse)

seq1  AAGC-TTCTGAGTTTGTGGATACAGCTTAA-GTCAGACATTACATTGACT  48
      |||| ||||||| ||||||||||||||||| |||||||| |||| |||||
seq2  AAGCTTTCTGAG-TTGTGGATACAGCTTAAGGTCAGACAATACA-TGACT  48

seq1  CTTGCAGTATGTGGCAAGGAGCCTGTCCAAC-ACAGTCAGTGCTTCGAGT  97
      ||||||||||||||||| ||||||||||||| ||||||||||||||||| 
seq2  CTTGCAGTATGTGGCAA-GAGCCTGTCCAACAACAGTCAGTGCTTCGAG-  96

seq1  TTTGAAGCCTGCTGCACAT-AAAATATTTTATAGCTG-AATTTTATTACA  145
      |||||||| |||||||||| |||||| |||||||||| ||||||||||||
seq2  TTTGAAGCTTGCTGCACATAAAAATAATTTATAGCTGAAATTTTATTACA  146

seq1  TTCAAACTTCACAGAGACATTTATGAACCTTATTGC-TTTCTGATATGAA  194
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCAAACTTCACAGAGACATTTATGAACCTTATTGCTTTTCTGATATGAA  196

seq1  A--TAAAGCCTAGAAAGACATTTCTGGTTTTATAGAACTGGAGCCTTTAT  242
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCCTAGAAAGACATTTCTGGTTTTATAGAACTGGAGCCTTTAT  246

seq1  TTTATCATTGTACAGAACAT--AAAAAAAAAAAACTGTTGGGTGCTAAAG  290
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TTTATCATTGTACAGAACATAAAAAAAAAAAAAACTGTTGGGTGCTAAAG  296

seq1  TTCAAAGTTAGTTCTCAAATATTTATTTCTGTAGGGATCATTGGGACCTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTTAGTTCTCAAATATTTATTTCTGTAGGGATCATTGGGACCTT  346

seq1  CACAAATTCTCAATGACTTTTACACCCTGCTTCTGATTTCCCTTTTTCTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTCTCAATGACTTTTACACCCTGCTTCTGATTTCCCTTTTTCTT  396

seq1  TCTTTTGGAGAATATGTACTGGGACCCTGATGACAGAAATACGAAGTCGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGAGAATATGTACTGGGACCCTGATGACAGAAATACGAAGTCGA  446

seq1  TTTGCTGTGTTCATTTCTCAATAAGAAGTGAGATACTGTTTATAGCCAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGTTCATTTCTCAATAAGAAGTGAGATACTGTTTATAGCCAAA  496

seq1  GGAGACACAGATGGAAAATGGAAAAAAAAATGACACATCATAGATAGCTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACAGATGGAAAATGGAAAAAAAAATGACACATCATAGATAGCTC  546

seq1  TACACAGTATGGCATTTTCATAACTCTTACAAGGACACACATTTCTCAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTATGGCATTTTCATAACTCTTACAAGGACACACATTTCTCAAG  596

seq1  ACTATACTTGGAAATTAAGTATTAATAGCCCTAGTAGCCGGGCGTGGTGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACTTGGAAATTAAGTATTAATAGCCCTAGTAGCCGGGCGTGGTGG  646

seq1  TGCACGCTTTTAATCCCAGCACTAGTGAGGCAGAGGCAGGTGAATTTCTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTTTTAATCCCAGCACTAGTGAGGCAGAGGCAGGTGAATTTCTG  696

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGACT  746

seq1  ACACAGAGAAACCCTGTCTCAAAAACAAACAAACAAAAACAAACAAAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTCAAAAACAAACAAACAAAAACAAACAAAAAA  796

seq1  GCCCTAGTAAGGGGATTTTCTACAATGCTGACCCTGGAAACTGAGGCCTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTAAGGGGATTTTCTACAATGCTGACCCTGGAAACTGAGGCCTT  846

seq1  CCTAAGAATCATTCAACTCATATTCCATGTTCTTGGATTCTTACTTTGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATCATTCAACTCATATTCCATGTTCTTGGATTCTTACTTTGTA  896

seq1  TCTGGCACTGTTCTGGGTGCAGCTGATCATCAAGGTAAAGGAGAATTTTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACTGTTCTGGGTGCAGCTGATCATCAAGGTAAAGGAGAATTTTA  946

seq1  TCAAGGAGGTTCTCAGACCAGAGATTCAAGCAAAGAATAGACAGGGATCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGGTTCTCAGACCAGAGATTCAAGCAAAGAATAGACAGGGATCT  996

seq1  TATCTACACACAGGTGGAGAAATTCAAGCTAGGCCACAAGACTGAGATGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACACACAGGTGGAGAAATTCAAGCTAGGCCACAAGACTGAGATGT  1046

seq1  TTCAGGGGAACATCCAGAAAAATATGTGAAGGAGGTCACCCCTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGAACATCCAGAAAAATATGTGAAGGAGGTCACCCCTGAATTC  1095