BAC Information

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BAC

Clone NameB6Ng01-303A11
Chromosome2 (Build37)
Map Location 84,877,943 - 84,973,162
singlet/doubletdoublet
Overlap geneSsrp1, Tnks1bp1
Upstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
Downstream geneAgtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303A11.bB6Ng01-303A11.g
ACCGA096930GA096931
length1,0451,138
definitionB6Ng01-303A11.b B6Ng01-303A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,972,122 - 84,973,162)(84,877,943 - 84,879,084)
sequence
gagcctgggatggtacaggggtcaatgatctgtgcctggaatggtgggat
gctgataagacccagactccaacctagagcaagctggagccagatggcct
gagtgatcccgacactgacagccaggctcactcctcacccaacctggtgc
tgatccatccctgtctcccaccacactatccatcacagaagctgtaagat
tggtaaacacaactgaggttgcaggccagactgatgtgccccaagactca
gaggctacccataccccagccctaggactgatatctctctggcatccaac
ctctctgtttagccccgaaaatgtttgttaaattaaagctttagaggtat
gcttagaggactggtgataacgtgggtctttacctcaggaccattctact
gtaatagcaagggcgacttttggcaaaactgattctaagttatctacttg
cagccaagtggtaaagcagtagctaaggcagggttgttagccagagtccc
cagggctaggtgacctaggagaggaacaagaaggtttcctaggggacttc
tctccccgaggtgatttcagttaggtattgtgacaagtcagagataaaca
gttcctggcagaaaagtgtcttggccctgttccatgagaagggccaaaat
tgctagcagagtgaaaattctagagttgggttcagaagtcttccccaact
ttccccacaagctgactcctcacctagagaacaaagccagccttggctgt
gatggacactgtcatgtgcacttagtgagtgcaagttttatatatgatgt
aaggccacttagatgtgacatctagggatccttgtgaacagactgcagat
aagtgtataaatgcatgtgtgtgcgagggtatgccttgcttgcatgtgca
ataaatgggtatacatatttatgtgtgtaggggaatgtgctttcttatat
agagtgggggtaggagtggtgccctggactcacacagctatgtcatagtt
ttcaggaggactaggataaacatccctgcctaaaggacagaaagt
gaattcagattcccaccctgctggacatctacacaactaaccaggaattg
gggcacagcatccagagaagggttcgttttctctggtgcagcctagggct
gtgtgctcaggccaccacgggcaggtgaacatggcagagacattggagtt
caacgacatcttccaggaggtgaaagggtccatggtgagaatggcttggg
caaaagaaaggcagagagggggaaagagttcgaatctatgaacgaaaagc
ttaactctgactacttttttggaaacagtgtatcagtgtgtcccccaagc
gaaaacgtgagcaaagtctcaaagagttgcaagatgttgagtttgttgag
ttgtattagaaaaccaggaaactggggcccttacagggtttctgatgcca
gagccaagcttgcagtctagacttaatgtctgttgtgtcttttaacttga
tttcaccacgaccgcttttcaattgatactctggccatcctgcatcccat
gggtaaggggtagaaaggatccactacacactaccctgttctgattttgg
gtctgtattttgggcagaatgatgggaggcttcgattgagccgtcagggt
atcatctttaagaacagcaagacgggcaaagtggacaacatccaggctgg
ggagttgacagaaggcatctggcgtcgggtagcattaggccatgggctta
aactgctcacaaagaatgggcatgtctacaagtacgatggcttccgcgaa
tcggtgagcgatcttgttctgtgacccactttctttgtaactgccttgtc
tttttttatttttaatcttctagagacagttggcgtttctctgataatca
tgttactgctcatttgggttcctcgaagcaaggctgttggagactattga
acaaaacaacaaacaaaaaaacagtgttgtgtattcagtacacgtgtcgt
gtacctgggactccaggaggttttctaccatcttaacttataccatgggt
ttcacttgctcccctctgtcctggctcagcatcttagctttgtgctctag
gattttgcttttcattttgagctgcttttggagtactggttttaatattc
cactttcatcaaggattcactacacaagttagaaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84972122_84973162
seq2: B6Ng01-303A11.b_53_1097 (reverse)

seq1  ACTTTCCTGTCCTTTAGGCA-GGATGTTTAT-CTAGTCCT-CTG-AAACT  46
      ||||| |||||||||||||| |||||||||| |||||||| ||| |||||
seq2  ACTTT-CTGTCCTTTAGGCAGGGATGTTTATCCTAGTCCTCCTGAAAACT  49

seq1  ATGACATAGCTGTGTGAGTCCAGGGCA-CACTCCTACCCCCACTCTATAT  95
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGACATAGCTGTGTGAGTCCAGGGCACCACTCCTACCCCCACTCTATAT  99

seq1  AAGAAAGCACATTCCCCTACACACATAAATATGTATACCCATTTATTGCA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCACATTCCCCTACACACATAAATATGTATACCCATTTATTGCA  149

seq1  CATGCAAGCAAGGCATACCCTCGCACACACATGCATTTATACACTTATCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGCAAGGCATACCCTCGCACACACATGCATTTATACACTTATCT  199

seq1  GCAGTCTGTTCACAAGGATCCCTAGATGTCACATCTAAGTGGCCTTACAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGTTCACAAGGATCCCTAGATGTCACATCTAAGTGGCCTTACAT  249

seq1  CATATATAAAACTTGCACTCACTAAGTGCACATGACAGTGTCCATCACAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAAACTTGCACTCACTAAGTGCACATGACAGTGTCCATCACAG  299

seq1  CCAAGGCTGGCTTTGTTCTCTAGGTGAGGAGTCAGCTTGTGGGGAAAGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGGCTTTGTTCTCTAGGTGAGGAGTCAGCTTGTGGGGAAAGTT  349

seq1  GGGGAAGACTTCTGAACCCAACTCTAGAATTTTCACTCTGCTAGCAATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGACTTCTGAACCCAACTCTAGAATTTTCACTCTGCTAGCAATTT  399

seq1  TGGCCCTTCTCATGGAACAGGGCCAAGACACTTTTCTGCCAGGAACTGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTCTCATGGAACAGGGCCAAGACACTTTTCTGCCAGGAACTGTT  449

seq1  TATCTCTGACTTGTCACAATACCTAACTGAAATCACCTCGGGGAGAGAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGACTTGTCACAATACCTAACTGAAATCACCTCGGGGAGAGAAG  499

seq1  TCCCCTAGGAAACCTTCTTGTTCCTCTCCTAGGTCACCTAGCCCTGGGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAGGAAACCTTCTTGTTCCTCTCCTAGGTCACCTAGCCCTGGGGA  549

seq1  CTCTGGCTAACAACCCTGCCTTAGCTACTGCTTTACCACTTGGCTGCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTAACAACCCTGCCTTAGCTACTGCTTTACCACTTGGCTGCAAG  599

seq1  TAGATAACTTAGAATCAGTTTTGCCAAAAGTCGCCCTTGCTATTACAGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACTTAGAATCAGTTTTGCCAAAAGTCGCCCTTGCTATTACAGTA  649

seq1  GAATGGTCCTGAGGTAAAGACCCACGTTATCACCAGTCCTCTAAGCATAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTCCTGAGGTAAAGACCCACGTTATCACCAGTCCTCTAAGCATAC  699

seq1  CTCTAAAGCTTTAATTTAACAAACATTTTCGGGGCTAAACAGAGAGGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGCTTTAATTTAACAAACATTTTCGGGGCTAAACAGAGAGGTTG  749

seq1  GATGCCAGAGAGATATCAGTCCTAGGGCTGGGGTATGGGTAGCCTCTGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGAGAGATATCAGTCCTAGGGCTGGGGTATGGGTAGCCTCTGAG  799

seq1  TCTTGGGGCACATCAGTCTGGCCTGCAACCTCAGTTGTGTTTACCAATCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGCACATCAGTCTGGCCTGCAACCTCAGTTGTGTTTACCAATCT  849

seq1  TACAGCTTCTGTGATGGATAGTGTGGTGGGAGACAGGGATGGATCAGCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCTGTGATGGATAGTGTGGTGGGAGACAGGGATGGATCAGCAC  899

seq1  CAGGTTGGGTGAGGAGTGAGCCTGGCTGTCAGTGTCGGGATCACTCAGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGGTGAGGAGTGAGCCTGGCTGTCAGTGTCGGGATCACTCAGGC  949

seq1  CATCTGGCTCCAGCTTGCTCTAGGTTGGAGTCTGGGTCTTATCAGCATCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTCCAGCTTGCTCTAGGTTGGAGTCTGGGTCTTATCAGCATCC  999

seq1  CACCATTCCAGGCACAGATCATTGACCCCTGTACCATCCCAGGCTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCCAGGCACAGATCATTGACCCCTGTACCATCCCAGGCTC  1045

seq1: chr2_84877943_84879084
seq2: B6Ng01-303A11.g_66_1203

seq1  GAATTCAGATTCCCACCCTGCTGGACATCTACACAACTAACCAGGAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCCCACCCTGCTGGACATCTACACAACTAACCAGGAATTG  50

seq1  GGGCACAGCATCCAGAGAAGGGTTCGTTTTCTCTGGTGCAGCCTAGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGCATCCAGAGAAGGGTTCGTTTTCTCTGGTGCAGCCTAGGGCT  100

seq1  GTGTGCTCAGGCCACCACGGGCAGGTGAACATGGCAGAGACATTGGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCAGGCCACCACGGGCAGGTGAACATGGCAGAGACATTGGAGTT  150

seq1  CAACGACATCTTCCAGGAGGTGAAAGGGTCCATGGTGAGAATGGCTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACATCTTCCAGGAGGTGAAAGGGTCCATGGTGAGAATGGCTTGGG  200

seq1  CAAAAGAAAGGCAGAGAGGGGGAAAGAGTTCGAATCTATGAACGAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAGGCAGAGAGGGGGAAAGAGTTCGAATCTATGAACGAAAAGC  250

seq1  TTAACTCTGACTACTTTTTTGGAAACAGTGTATCAGTGTGTCCCCCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGACTACTTTTTTGGAAACAGTGTATCAGTGTGTCCCCCAAGC  300

seq1  GAAAACGTGAGCAAAGTCTCAAAGAGTTGCAAGATGTTGAGTTTGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTGAGCAAAGTCTCAAAGAGTTGCAAGATGTTGAGTTTGTTGAG  350

seq1  TTGTATTAGAAAACCAGGAAACTGGGGCCCTTACAGGGTTTCTGATGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAGAAAACCAGGAAACTGGGGCCCTTACAGGGTTTCTGATGCCA  400

seq1  GAGCCAAGCTTGCAGTCTAGACTTAATGTCTGTTGTGTCTTTTAACTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGCTTGCAGTCTAGACTTAATGTCTGTTGTGTCTTTTAACTTGA  450

seq1  TTTCACCACGACCGCTTTTCAATTGATACTCTGGCCATCCTGCATCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACGACCGCTTTTCAATTGATACTCTGGCCATCCTGCATCCCAT  500

seq1  GGGTAAGGGGTAGAAAGGATCCACTACACACTACCCTGTTCTGATTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGGGTAGAAAGGATCCACTACACACTACCCTGTTCTGATTTTGG  550

seq1  GTCTGTATTTTGGGCAGAATGATGGGAGGCTTCGATTGAGCCGTCAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATTTTGGGCAGAATGATGGGAGGCTTCGATTGAGCCGTCAGGGT  600

seq1  ATCATCTTTAAGAACAGCAAGACGGGCAAAGTGGACAACATCCAGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTAAGAACAGCAAGACGGGCAAAGTGGACAACATCCAGGCTGG  650

seq1  GGAGTTGACAGAAGGCATCTGGCGTCGGGTAGCATTAGGCCATGGGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGACAGAAGGCATCTGGCGTCGGGTAGCATTAGGCCATGGGCTTA  700

seq1  AACTGCTCACAAAGAATGGGCATGTCTACAAGTACGATGGCTTCCGCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCACAAAGAATGGGCATGTCTACAAGTACGATGGCTTCCGCGAA  750

seq1  TCGGTGAGCGATCTTGTTCTGTGACCCACTTTCTTTGTAACTGCCTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGAGCGATCTTGTTCTGTGACCCACTTTCTTTGTAACTGCCTTGTC  800

seq1  TTTTTTTATTTTTAATCTTCTAGAGACAGTTGGCGTTTCTCTGATAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTTTTAATCTTCTAGAGACAGTTGGCGTTTCTCTGATAATCA  850

seq1  TGTTACTGCTCATTTGGGTTCCTCGAAGCAAGGCTGTTGGAGACTATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGCTCATTTGGGTTCCTCGAAGCAAGGCTGTTGGAGACTATTGA  900

seq1  ACAAAACAAACAAACAAAAAAAACAGTGTTGTGTATTCAGTACACGTGTC  950
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAAAC-AACAAAC-AAAAAAACAGTGTTGTGTATTCAGTACACGTGTC  948

seq1  GTGTACCT-GGACTCCAGGAGGTTTTCTACCATCTTAACTTATACCATGG  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTGGGACTCCAGGAGGTTTTCTACCATCTTAACTTATACCATGG  998

seq1  TTTCCACTTGCT-CCCTCTGTCCTGGCTCAGCATCTTAGCTTGGTGCTCT  1048
       || |||||||| ||||||||||||||||||||||||||||| |||||||
seq2  GTTTCACTTGCTCCCCTCTGTCCTGGCTCAGCATCTTAGCTTTGTGCTCT  1048

seq1  AGGATTTTGCTTTTCCATTTTGAGCTGCTTTTGAGTTACTTGGTTTTAAT  1098
      |||||||||||||| ||||||||||||||||||   ||| ||||||||||
seq2  AGGATTTTGCTTTT-CATTTTGAGCTGCTTTTGGAGTAC-TGGTTTTAAT  1096

seq1  ATT-CACTTTCATCAAAAGATCACCTACACAAAGTTTAGAAACTC  1142
      ||| |||||||||| || |||   ||||||||   ||||||||||
seq2  ATTCCACTTTCATC-AAGGATTCACTACACAA--GTTAGAAACTC  1138