BAC Information

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BAC

Clone NameB6Ng01-303A12
Chromosome2 (Build37)
Map Location 45,491,780 - 45,618,733
singlet/doubletdoublet
Overlap geneLOC100042661, LOC100041337
Upstream geneGtdc1, Zeb2
Downstream geneLOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303A12.bB6Ng01-303A12.g
ACCGA096932GA096933
length1,1461,177
definitionB6Ng01-303A12.b B6Ng01-303A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,617,600 - 45,618,733)(45,491,780 - 45,492,953)
sequence
gaattccaccaagtctaacatccatctacagttactgtaatcacattggt
agtcagcagaaaatagcctttttcttgaaaatactataatcatttcccta
tatattgaattaaaaggccaatgtttagattgtacctctctcagaactat
caaaagccccaactgactgctacctctactactgaccattgtctaaacaa
gtatagaaggtgacatgaacttgacagagcataagggggacatggaagga
gttgaatgaagtgagaaagggttggaaattatataaatgcagtactcatg
tatgaagttcttaaaaaaaaacagggggtaaataaatactatcacttgac
taaaatattatcatgggaaaggggaaggctcatttaatctatccaagcat
taccagaatagaaaataaaggaaaaacaacaagaagaattatcaagtatc
tgggaagcattagaatcaaaaatcatggccctcaccctttactcagtcat
ccttctccttcttcaaataaaatcacatttaaattcatgaatatataata
tcattaagcttctgtttagtaaatccatatgagagaagcatataaattat
tctcagggaaaaatctgaaaataaaatatcttgtgtttctgtgcaacttt
tagaaaatcaggatacagcatattaaaatatattaaccttggttgttatt
cagaaatattcttatgagttaatgaaataagtgtatttttactatcaaat
atcagaaaaaggtagatacagaaattaaattccattttttactaagaacc
taatttctagtgggcacatctacatatcatgtgaacattggtttttaacc
atctttactagtatattgacataaaaactttcttaaagttccaaaatttc
atttctaagcagagagatgttccctagataatgacttctcaaacacattg
tccagaatttttggctgttttagatctccctggaaggactcactcaaaca
ggagtttacttgggaaatttatagtttaacaagttgccccggagatgttg
gtggtatttttttagtcaacctcttgttcactttgaaaaacttctgtttg
ggagaacttgttaattggctcttattttcctataaactcgataaaa

gaattctgttgggaggactttgccaaaagcaatagaagttggtgaagaga
tcttatccaaatcaccatggccatcctcatttgtagcattatgtggagag
aaagcaagaaagactgtaagtcacaataagattatatatttattggacat
agagaatattaggtatgtcttattcctcccatctcatctatgaatatgca
tgaccagatcttagtgatccaagctaggctgatgggttatagtaatatac
agtccacctaattcttaacagagtaacaactgcttatagagcaatgttcc
agtctttcatttttattagggtatccctatgactttgtctcaggctattt
caatgggcattggattttcagttcaggtcaatggatatcttattaattga
tgcttttgtgttgccctaactaacctattccatactacaaagaattcaaa
gaagaggaaactgaatagtcctttcctctgaagccattgtgatattcctt
atttctggaattacatttggagtaggaacgatgtatgaaagaactccagg
aagttacaaaactcctttacatggccggctggatctgtgtataatttcca
gcattacctagaataaataccaggagactggtgtgatttatacaagagtt
tatagagaaaaagtccacccactagctcccatgctaaggattacaaccag
gtccctgctgccaagtgctgtgtttaggtaaagcatgagaaaatctgcca
ttttttttttagagtcacaaaagggtttctacggtaagaaacggtaagaa
gctgacagctttttatgcataaaaggcagctgttccttctcaggtaatat
tattaatgaaccctaaggtaatgtttgctctgaaataagcctaattgaaa
taatttactctgacccttggagaattatgaaactgttttcaccatgttca
cacacagcaaaatattatgagatgccatatggaaaagtcatcatgtggtt
gatgtctttctgaatctatattttagaaatgtttccacagataatcaata
tagctaatttacaaaagtagaagtgacagtccattttcatatgaagatct
ggaatataaattgtttggcattcccggacattaaggaagtgttgacatca
gctaattatttttttcaagctatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45617600_45618733
seq2: B6Ng01-303A12.b_43_1188 (reverse)

seq1  TTTTATCTGAAGTTTATAGGAAA--TAGAGCCCA-TAACAAG-TCTCC--  44
      |||||||   |||||||||||||   |||||| | ||||||| |||||  
seq2  TTTTATC--GAGTTTATAGGAAAATAAGAGCCAATTAACAAGTTCTCCCA  48

seq1  AACAG-AGTTTTTC-AAGTGAACAAGA-GTTGACT-AAAAAATACCACCA  90
      ||||| |||||||| |||||||||||| ||||||| ||||||||||||||
seq2  AACAGAAGTTTTTCAAAGTGAACAAGAGGTTGACTAAAAAAATACCACCA  98

seq1  ACATCTCC-GGGCAACTTGTTAAACTATAAATTT-CCAAGT-AACTCCTG  137
      |||||||| ||||||||||||||||||||||||| |||||| ||||||||
seq2  ACATCTCCGGGGCAACTTGTTAAACTATAAATTTCCCAAGTAAACTCCTG  148

seq1  TTTGAGTGAGTCCTTCCAGGGAGATCTAAAACAGCCAAAAATTCTGGACA  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGAGTCCTTCCAGGGAGATCTAAAACAGCCAAAAATTCTGGACA  198

seq1  ATGTGTTTGAGAAGTCATTATCTA-GGAACATCTCTCTGCTTAGAAATGA  236
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGTGTTTGAGAAGTCATTATCTAGGGAACATCTCTCTGCTTAGAAATGA  248

seq1  AATTTTGGAACTTTAAGAAAGTTTTTATGTCAATATACTAGTAAAGATGG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGAACTTTAAGAAAGTTTTTATGTCAATATACTAGTAAAGATGG  298

seq1  TTAAAAACCAATGTTCACATGATATGTAGATGTGCCCACTAGAAATTAGG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCAATGTTCACATGATATGTAGATGTGCCCACTAGAAATTAGG  348

seq1  TTCTTAGTAAAAAATGGAATTTAATTTCTGTATCTACCTTTTTCTGATAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTAAAAAATGGAATTTAATTTCTGTATCTACCTTTTTCTGATAT  398

seq1  TTGATAGTAAAAATACACTTATTTCATTAACTCATAAGAATATTTCTGAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGTAAAAATACACTTATTTCATTAACTCATAAGAATATTTCTGAA  448

seq1  TAACAACCAAGGTTAATATATTTTAATATGCTGTATCCTGATTTTCTAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACCAAGGTTAATATATTTTAATATGCTGTATCCTGATTTTCTAAA  498

seq1  AGTTGCACAGAAACACAAGATATTTTATTTTCAGATTTTTCCCTGAGAAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCACAGAAACACAAGATATTTTATTTTCAGATTTTTCCCTGAGAAT  548

seq1  AATTTATATGCTTCTCTCATATGGATTTACTAAACAGAAGCTTAATGATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATGCTTCTCTCATATGGATTTACTAAACAGAAGCTTAATGATA  598

seq1  TTATATATTCATGAATTTAAATGTGATTTTATTTGAAGAAGGAGAAGGAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTCATGAATTTAAATGTGATTTTATTTGAAGAAGGAGAAGGAT  648

seq1  GACTGAGTAAAGGGTGAGGGCCATGATTTTTGATTCTAATGCTTCCCAGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTAAAGGGTGAGGGCCATGATTTTTGATTCTAATGCTTCCCAGA  698

seq1  TACTTGATAATTCTTCTTGTTGTTTTTCCTTTATTTTCTATTCTGGTAAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATAATTCTTCTTGTTGTTTTTCCTTTATTTTCTATTCTGGTAAT  748

seq1  GCTTGGATAGATTAAATGAGCCTTCCCCTTTCCCATGATAATATTTTAGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATAGATTAAATGAGCCTTCCCCTTTCCCATGATAATATTTTAGT  798

seq1  CAAGTGATAGTATTTATTTACCCCCTGTTTTTTTTTAAGAACTTCATACA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATAGTATTTATTTACCCCCTGTTTTTTTTTAAGAACTTCATACA  848

seq1  TGAGTACTGCATTTATATAATTTCCAACCCTTTCTCACTTCATTCAACTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTGCATTTATATAATTTCCAACCCTTTCTCACTTCATTCAACTC  898

seq1  CTTCCATGTCCCCCTTATGCTCTGTCAAGTTCATGTCACCTTCTATACTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGTCCCCCTTATGCTCTGTCAAGTTCATGTCACCTTCTATACTT  948

seq1  GTTTAGACAATGGTCAGTAGTAGAGGTAGCAGTCAGTTGGGGCTTTTGAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGACAATGGTCAGTAGTAGAGGTAGCAGTCAGTTGGGGCTTTTGAT  998

seq1  AGTTCTGAGAGAGGTACAATCTAAACATTGGCCTTTTAATTCAATATATA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGAGAGGTACAATCTAAACATTGGCCTTTTAATTCAATATATA  1048

seq1  GGGAAATGATTATAGTATTTTCAAGAAAAAGGCTATTTTCTGCTGACTAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGATTATAGTATTTTCAAGAAAAAGGCTATTTTCTGCTGACTAC  1098

seq1  CAATGTGATTACAGTAACTGTAGATGGATGTTAGACTTGGTGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATTACAGTAACTGTAGATGGATGTTAGACTTGGTGGAATTC  1146


seq1: chr2_45491780_45492953
seq2: B6Ng01-303A12.g_67_1243

seq1  GAATTCTGTTGGGAGGACTTTGCCAAAAGCAATAGAAGTTGGTGAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGGGAGGACTTTGCCAAAAGCAATAGAAGTTGGTGAAGAGA  50

seq1  TCTTATCCAAATCACCATGGCCATCCTCATTTGTAGCATTATGTGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCAAATCACCATGGCCATCCTCATTTGTAGCATTATGTGGAGAG  100

seq1  AAAGCAAGAAAGACTGTAAGTCACAATAAGATTATATATTTATTGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAAAGACTGTAAGTCACAATAAGATTATATATTTATTGGACAT  150

seq1  AGAGAATATTAGGTATGTCTTATTCCTCCCATCTCATCTATGAATATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATTAGGTATGTCTTATTCCTCCCATCTCATCTATGAATATGCA  200

seq1  TGACCAGATCTTAGTGATCCAAGCTAGGCTGATGGGTTATAGTAATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGATCTTAGTGATCCAAGCTAGGCTGATGGGTTATAGTAATATAC  250

seq1  AGTCCACCTAATTCTTAACAGAGTAACAACTGCTTATAGAGCAATGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACCTAATTCTTAACAGAGTAACAACTGCTTATAGAGCAATGTTCC  300

seq1  AGTCTTTCATTTTTATTAGGGTATCCCTATGACTTTGTCTCAGGCTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCATTTTTATTAGGGTATCCCTATGACTTTGTCTCAGGCTATTT  350

seq1  CAATGGGCATTGGATTTTCAGTTCAGGTCAATGGATATCTTATTAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCATTGGATTTTCAGTTCAGGTCAATGGATATCTTATTAATTGA  400

seq1  TGCTTTTGTGTTGCCCTAACTAACCTATTCCATACTACAAAGAATTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTGTTGCCCTAACTAACCTATTCCATACTACAAAGAATTCAAA  450

seq1  GAAGAGGAAACTGAATAGTCCTTTCCTCTGAAGCCATTGTGATATTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAACTGAATAGTCCTTTCCTCTGAAGCCATTGTGATATTCCTT  500

seq1  ATTTCTGGAATTACATTTGGAGTAGGAACGATGTATGAAAGAACTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGAATTACATTTGGAGTAGGAACGATGTATGAAAGAACTCCAGG  550

seq1  AAGTTACAAAACTCCTTTACATGGCCGGCTGGATCTGTGTATAATTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAAACTCCTTTACATGGCCGGCTGGATCTGTGTATAATTTCCA  600

seq1  GCATTACCTAGAATAAATACCAGGAGACTGGTGTGATTTATACAAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCTAGAATAAATACCAGGAGACTGGTGTGATTTATACAAGAGTT  650

seq1  TATAGAGAAAAAGTCCACCCACTAGCTCCCATGCTAAGGATTACAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAAAAAGTCCACCCACTAGCTCCCATGCTAAGGATTACAACCAG  700

seq1  GTCCCTGCTGCCAAGTGCTGTGTTTAGGTAAAGCATGAGAAAATCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCTGCCAAGTGCTGTGTTTAGGTAAAGCATGAGAAAATCTGCCA  750

seq1  -TTTTTTTTTAGAGTCACAAAAGGGTTTCTACGGTAAGAAACGGTAAGAA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAGAGTCACAAAAGGGTTTCTACGGTAAGAAACGGTAAGAA  800

seq1  GCTGACAGCTTTTTATGCATAAAAGGCAGCTGTTCCTTCTCAGGTAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGCTTTTTATGCATAAAAGGCAGCTGTTCCTTCTCAGGTAATAT  850

seq1  TATTAATGAACCCTAAGGTAATGTTTGCTCTGAAATAAGCCTAATTGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGAACCCTAAGGTAATGTTTGCTCTGAAATAAGCCTAATTGAAA  900

seq1  TAATTTACTCTGACCCTTGGAGAATTATGAAACTGTTTTCACCATGTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACTCTGACCCTTGGAGAATTATGAAACTGTTTTCACCATGTTCA  950

seq1  CACACAGCAAAATAATTATGAGATGCCATATGGAAAAGTCATCATGTGGT  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAAAAT-ATTATGAGATGCCATATGGAAAAGTCATCATGTGGT  999

seq1  GGATGTCTTTCTGAATCTATATTTTAGAAATGTTTCCCACAGATAAATCA  1049
       |||||||||||||||||||||||||||||||||| ||||||||||   |
seq2  TGATGTCTTTCTGAATCTATATTTTAGAAATGTTT-CCACAGATAATCAA  1048

seq1  TATAGCTAATTTAC-AAAGTAGAGGTGGACAGTTCCATTTTCATATGGAG  1098
      |||||||||||||| |||||||| || ||||| |||||||||||||| ||
seq2  TATAGCTAATTTACAAAAGTAGAAGT-GACAG-TCCATTTTCATATGAAG  1096

seq1  ATCTG--ATATAAAATGTTTGCAATTCCAGAATATTAAGGAGAGTGTTGA  1146
      |||||  ||||||| ||||||  ||||| | | |||||||| ||||||||
seq2  ATCTGGAATATAAATTGTTTGGCATTCCCGGACATTAAGGA-AGTGTTGA  1145

seq1  CATCAG-TAATTATTTTT---CAGCTATGAGA  1174
      |||||| |||||||||||    ||||||||||
seq2  CATCAGCTAATTATTTTTTTCAAGCTATGAGA  1177


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