BAC Information

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BAC

Clone NameB6Ng01-303L06
Chromosome2 (Build37)
Map Location 109,954,914 - 110,146,059
singlet/doubletdoublet
Overlap geneLOC668797, Bbox1
Upstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34
Downstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303L06.bB6Ng01-303L06.g
ACCGA097441GA097442
length1,0201,198
definitionB6Ng01-303L06.b B6Ng01-303L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,145,052 - 110,146,059)(109,954,914 - 109,956,066)
sequence
ggaattctcttgatttggatttgatgtggcatttttatcttacagctagt
cactgtgcttctgtttacaacatgtgaaatactctaatcagaacaaaggt
cccggcatggggcgaactgtaggctcacactgctgagtggtaggcagagg
ccagagtccacttgcagtattgtagagatcaggttcaggtacaatctgcc
agcctactataattaacactgatttgtcctagcaggtggctgataggatt
tatcaccaaagaccagaaacatgcactgtgccatcctaaaggcagaagca
gtggatggggctcatttgatgcagatcttttggcacgatggggcagagtc
cctctacccagcagtatggctgagagacaactgtcagtgttcagactgct
acctacattctgcaaaagctcggaaacttctcctggaagctcttgatgta
aacattagaatcgatgatttgacatttgaccggaaaaaggtaattacgtc
taaatgctcttccccttctctgttgatttagatcaaggggttagtctata
gtaatttaagtaactcttttttaacttctcatatatagaggaaaccctcc
atggacatggttgtacattgtttgatagggtaggaatattcagtggaaaa
atctactgttgttatcactactacaacatttttatatttttattttttaa
taggcttacttttttattttaaatgaaatttcattacatcaccttttctt
tcttttttccttcatccaactcattccatattctcctcactccctctcaa
agtagtggtcaatttcccttttaatattgttacatatacacattaaataa
aacatataaatatagcctactgatatatttctgggtttctcttcagaatg
tatgatattttgattttaaaactactaccatcttaataccatatggcaaa
tttccattttttaattcttttaggggggaagcagcttgaaacaccattca
tgcaattttttaccatgaaa
gaattctttgtagaagagaatgcttttactaaaatgttattttttaaggg
gcatgggagaagaaactgaccagctttagtaataaagagggctctttgaa
ctagaaaatggagcgaaaggatgatggacagtctcaggattgctgtatgt
gatagatgaagagagctggcctggtgtggcttccccagaaggaactgctt
ttgatcacatcccatccagtgggaactctgaggtgaactagtattgcctc
ttgtgcactgacccctcctggtgatggtcacaagtttcagagacaaggct
gcagcttttgaggcagttgagatattctttgctgtgtagacacgtaggag
aaaaactaacagctgttctaccctcaagagctgtgatggctattctttct
tgtcaatttgatttaatctataattaactgaaatcctaaatggaggacac
atcactgaggaatctttttttcttagtttgaaggtggaagatccactttt
gatctagattttgagtcagaaagacacacttttaatctgggcctatctaa
gggcatggaagaaggaagcctttgttatttgcctgctttccttcaccctg
ctagcagacctatcctttcattggcattatagtcaacttctttgagattt
caccatctactgaagaccagctaagacatgcaacctcacggattgagcat
caaactagattcttggactttgtgtccgtagcttgtactgtaacctgtaa
gtcattctcaaaacccccatgtatgcgtgtgcgtgtgtggctagatgctt
tggaaataattactgttaatacagagtcaagaccacttgccttggcatgc
ttggcagacttagggttcgatccctaggttccatatataaattttttaaa
tgaaaaaatgtaagtatgaatagtaattaaagggaatctagaataacaat
tgggaggaaatcccctgaatagagtttatttataacctttccaccagtta
ggatcaagcaccaaagactgggcagagttgatagaagatctccagctgta
ccatttagaagaagaatggcttttgatgaaataaacttcacccctggtcc
aatcctgcaaacagacaggaaaaatagaagactgatgtccttgcctttcc
ctctccctactccacatcccttttgcccagaccacgttgtgttttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110145052_110146059
seq2: B6Ng01-303L06.b_46_1065 (reverse)

seq1  TTTCATGGT-ATAAATTGCATG-ATTGTGTTTCAAGCCTGCTT-CCCCCT  47
      ||||||||| | |||||||||| || |||||||||| |||||| ||||||
seq2  TTTCATGGTAAAAAATTGCATGAATGGTGTTTCAAG-CTGCTTCCCCCCT  49

seq1  AAAAGAA-TAAAAAATGGAAATTTG-CATATGGTATTAAGATGGTAGTAG  95
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAGAATTAAAAAATGGAAATTTGCCATATGGTATTAAGATGGTAGTAG  99

seq1  TTTTAAAATCAAAATATCATACATTCTGAAGAGAAA-CCAG-AATATATC  143
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TTTTAAAATCAAAATATCATACATTCTGAAGAGAAACCCAGAAATATATC  149

seq1  AGTAGGCTATATTTATATG-TTTATTT-ATGTGTATATGTAACAATATT-  190
      ||||||||||||||||||| ||||||| ||||||||||||||||||||| 
seq2  AGTAGGCTATATTTATATGTTTTATTTAATGTGTATATGTAACAATATTA  199

seq1  AAAGGGAAATTGACCACTACTTTGAGAGGGAGTGAGGAGAATATGGAATG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAATTGACCACTACTTTGAGAGGGAGTGAGGAGAATATGGAATG  249

seq1  AGTTGGATGAAGGAAAAAAGAAAGAAAAGGTGATGTAATGAAATTTCATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATGAAGGAAAAAAGAAAGAAAAGGTGATGTAATGAAATTTCATT  299

seq1  TAAAAT-AAAAAGTAAGCCTATT-AAAAATAAAAATAT-AAAATGTTGTA  337
      |||||| |||||||||||||||| |||||||||||||| |||||||||||
seq2  TAAAATAAAAAAGTAAGCCTATTAAAAAATAAAAATATAAAAATGTTGTA  349

seq1  GTAGTGATAACAACAGTAGATTTTTCCACTGAATATTCCTACCCTATCAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATAACAACAGTAGATTTTTCCACTGAATATTCCTACCCTATCAA  399

seq1  ACAATGTACAACCATGTCCATGGAGGGTTTCCTCTATATATGAGAAGTTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACAACCATGTCCATGGAGGGTTTCCTCTATATATGAGAAGTTA  449

seq1  AAAAAGAGTTACTTAAATTACTATAGACTAACCCCTTGATCTAACTCAAC  487
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAAGAGTTACTTAAATTACTATAGACTAACCCCTTGATCTAAATCAAC  499

seq1  AGAGAAGGGGAAGAGCATTTAGACGTAATTACCTTTTTCCGGTCAAATGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGGAAGAGCATTTAGACGTAATTACCTTTTTCCGGTCAAATGT  549

seq1  CAAATCATCGATTCTAATGTTTACATCAAGAGCTTCCAGGAGAAGTTTCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATCGATTCTAATGTTTACATCAAGAGCTTCCAGGAGAAGTTTCC  599

seq1  GAGCTTTTGCAGAATGTAGGTAGCAGTCTGAACACTGACAGTTGTCTCTC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTGCAGAATGTAGGTAGCAGTCTGAACACTGACAGTTGTCTCTC  649

seq1  AGCCATACTGCTGGGTAGAGGGACTCTGCCCCATCGTGCCAAAAGATCTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACTGCTGGGTAGAGGGACTCTGCCCCATCGTGCCAAAAGATCTG  699

seq1  CATCAAATGAGCCCCATCCACTGCTTCTGCCTTTAGGATGGCACAGTGCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGAGCCCCATCCACTGCTTCTGCCTTTAGGATGGCACAGTGCA  749

seq1  TGTTTCTGGTCTTTGGTGATAAATCCTATCAGCCACCTGCTAGGACAAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGTCTTTGGTGATAAATCCTATCAGCCACCTGCTAGGACAAAT  799

seq1  CAGTGTTAATTATAGTAGGCTGGCAGATTGTACCTGAACCTGATCTCTAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAATTATAGTAGGCTGGCAGATTGTACCTGAACCTGATCTCTAC  849

seq1  AATACTGCAAGTGGACTCTGGCCTCTGCCTACCACTCAGCAGTGTGAGCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCAAGTGGACTCTGGCCTCTGCCTACCACTCAGCAGTGTGAGCC  899

seq1  TACAGTTCGCCCCATGCCGGGACCTTTGTTCTGATTAGAGTATTTCACAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCGCCCCATGCCGGGACCTTTGTTCTGATTAGAGTATTTCACAT  949

seq1  GTTGTAAACAGAAGCACAGTGACTAGCTGTAAGATAAAAATGCCACATCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAACAGAAGCACAGTGACTAGCTGTAAGATAAAAATGCCACATCA  999

seq1  AATCCAAATCAAGAGAATTCC  1008
      |||||||||||||||||||||
seq2  AATCCAAATCAAGAGAATTCC  1020

seq1: chr2_109954914_109956066
seq2: B6Ng01-303L06.g_66_1263

seq1  GAATTCTTTGTAGAAGAGAATGCTTTTACTAAAATGTTATTTTTTAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAGAAGAGAATGCTTTTACTAAAATGTTATTTTTTAAGGG  50

seq1  GCATGGGAGAAGAAACTGACCAGCTTTAGTAATAAAGAGGGCTCTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGAAGAAACTGACCAGCTTTAGTAATAAAGAGGGCTCTTTGAA  100

seq1  CTAGAAAATGGAGCGAAAGGATGATGGACAGTCTCAGGATTGCTGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAATGGAGCGAAAGGATGATGGACAGTCTCAGGATTGCTGTATGT  150

seq1  GATAGATGAAGAGAGCTGGCCTGGTGTGGCTTCCCCAGAAGGAACTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGAAGAGAGCTGGCCTGGTGTGGCTTCCCCAGAAGGAACTGCTT  200

seq1  TTGATCACATCCCATCCAGTGGGAACTCTGAGGTGAACTAGTATTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACATCCCATCCAGTGGGAACTCTGAGGTGAACTAGTATTGCCTC  250

seq1  TTGTGCACTGACCCCTCCTGGTGATGGTCACAAGTTTCAGAGACAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACTGACCCCTCCTGGTGATGGTCACAAGTTTCAGAGACAAGGCT  300

seq1  GCAGCTTTTGAGGCAGTTGAGATATTCTTTGCTGTGTAGACACGTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTTGAGGCAGTTGAGATATTCTTTGCTGTGTAGACACGTAGGAG  350

seq1  AAAAACTAACAGCTGTTCTACCCTCAAGAGCTGTGATGGCTATTCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAACAGCTGTTCTACCCTCAAGAGCTGTGATGGCTATTCTTTCT  400

seq1  TGTCAATTTGATTTAATCTATAATTAACTGAAATCCTAAATGGAGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTGATTTAATCTATAATTAACTGAAATCCTAAATGGAGGACAC  450

seq1  ATCACTGAGGAATCTTTTTTTCTTAGTTTGAAGGTGGAAGATCCACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAGGAATCTTTTTTTCTTAGTTTGAAGGTGGAAGATCCACTTTT  500

seq1  GATCTAGATTTTGAGTCAGAAAGACACACTTTTAATCTGGGCCTATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGATTTTGAGTCAGAAAGACACACTTTTAATCTGGGCCTATCTAA  550

seq1  GGGCATGGAAGAAGGAAGCCTTTGTTATTTGCCTGCTTTCCTTCACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGAAGAAGGAAGCCTTTGTTATTTGCCTGCTTTCCTTCACCCTG  600

seq1  CTAGCAGACCTATCCTTTCATTGGCATTATAGTCAACTTCTTTGAGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGACCTATCCTTTCATTGGCATTATAGTCAACTTCTTTGAGATTT  650

seq1  CACCATCTACTGAAGACCAGCTAAGACATGCAACCTCACGGATTGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTACTGAAGACCAGCTAAGACATGCAACCTCACGGATTGAGCAT  700

seq1  C-AACTAGATTCTTGGACTTTGTGTCCGTAGC-TGTACTGTAACCTGTAA  748
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAAACTAGATTCTTGGACTTTGTGTCCGTAGCTTGTACTGTAACCTGTAA  750

seq1  GTCATTCTCAAAACCCCCATGTATGCGTGTGCGTGTGTGGCTAGATGC-T  797
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCATTCTCAAAACCCCCATGTATGCGTGTGCGTGTGTGGCTAGATGCTT  800

seq1  TGGAAATAA-TACTGTTAATACAGAGTC-AGACCACTTGCCTT-GCATGC  844
      ||||||||| |||||||||||||||||| |||||||||||||| ||||||
seq2  TGGAAATAATTACTGTTAATACAGAGTCAAGACCACTTGCCTTGGCATGC  850

seq1  TTGGCAGACT--AGGTTCGATCCCTA-GTTCCATATATAAA-TTTTTAAA  890
      ||||||||||   ||||||||||||| |||||||||||||| ||||||||
seq2  TTGGCAGACTTAGGGTTCGATCCCTAGGTTCCATATATAAATTTTTTAAA  900

seq1  TG-AAAAATG-AAGTATGAATAG-AATT-AAGGGAA-CAAGAATAACAAA  935
      || ||||||| |||||||||||| |||| ||||||| | |||||||||| 
seq2  TGAAAAAATGTAAGTATGAATAGTAATTAAAGGGAATCTAGAATAACAAT  950

seq1  T-GGAGGGAAT-CCCTGAA-AGAGTT--ATTATAACCTTTCAACCAGTTA  980
      | ||||| ||| ||||||| ||||||   |||||||||||| ||||||||
seq2  TGGGAGGAAATCCCCTGAATAGAGTTTATTTATAACCTTTCCACCAGTTA  1000

seq1  GGA-CAAGCA-CAAAGACT-GGCAGAGTTGAAAGAAGATC-CAAGCTGTA  1026
      ||| |||||| |||||||| ||||||||||| |||||||| | |||||||
seq2  GGATCAAGCACCAAAGACTGGGCAGAGTTGATAGAAGATCTCCAGCTGTA  1050

seq1  -CATGT--AAGAGAGATGGGCTTTGAT-AGAGAAAC-TCAGCCACTGTCC  1071
       ||| |  ||||   ||||  |||||| | | |||| ||| ||   ||||
seq2  CCATTTAGAAGAAGAATGGCTTTTGATGAAATAAACTTCACCCCTGGTCC  1100

seq1  AA-ACTGC-AACAGACAGG-AGAATAGGAGACTGATGTCCTGGC--TTTC  1116
      ||  |||| |||||||||| | ||||| ||||||||||||| ||  || |
seq2  AATCCTGCAAACAGACAGGAAAAATAGAAGACTGATGTCCTTGCCTTTCC  1150

seq1  CTCT-CCTACT-CAC-TCCC--TTGCC---AGCACGTTG---TTTCCA  1153
      |||| |||||| ||| ||||  |||||   | |||||||   ||||||
seq2  CTCTCCCTACTCCACATCCCTTTTGCCCAGACCACGTTGTGTTTTCCA  1198