BAC Information

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BAC

Clone NameB6Ng01-304A21
Chromosome19 (Build37)2 (Build37)
Map Location 43,692,012 - 43,692,30935,143,379 - 35,143,935
singlet/doubletsingletsinglet
Overlap geneLOC100042700
Upstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3
Downstream geneLOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304A21.bB6Ng01-304A21.g
ACCGA097703GA097704
length298956
definitionB6Ng01-304A21.b B6Ng01-304A21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,692,012 - 43,692,309)(35,143,379 - 35,143,935)
sequence
atttttgtgtatgttaagtgggctggtgggacatgacaacaaccaaataa
atgttctattgttgttgttgttttaatagtgggtagacttaaagtgtaaa
gtgaataaaatactaaaaattgaagtcctttgagataagaatcagagaaa
gacatttacgttgatacctgactaggaaaactaaacacgccaaccttctc
tcttagtcctaaaacctctgcagtgcattgttgtccccctttctgggaca
ttttaaaaataaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccaaaatggtagtttgtgttgtcatcaccccaggagatagtcttt
atgagaaaggcaggaggaggatactggttttctttgttcactaatttcca
aaataatgagtctgttgccaagatcctccaaaggttacaaggacaggatt
tggattttaaagtgcataatatactggggctggagagatgggtcagcagt
taagagcactggctattcttccaaagggcctgggttcaattcccagcagc
cacacaacagctcataacagtctgtaactccagctccaggggatctggca
ctgtaacgaagacacacatgcaggcaaaacactaaagcacataaaataaa
accaaacagatcactgaagtgcatatatttaaacgcattagatagatctt
agtacactgtgaggattgtgttgatagtttgcttaaaatctcccagctta
actggtgggaatctcttgaaaaaggttccagcatcttttgacaaggtctt
tggaagtgtctttgctttctgatctgataaggttttccaggcttatcttg
tatgtttcttgcactggcctttagtttaaaaaactggattcctttgggtg
aagatactttttagtttgtgtgtgcacatccatatctgtctgcacatatg
tagaggtcagaggatgacttcattcctgggtctgtctccgtctccctctc
agaaccaaggcctgccattgaccttgaacttgctcaatagaccattgagt
tccaagggtctgttcatctctacctacccagaactgggattacaagtgta
cgcttttgtgtctgttttttgtttgtttggttttggtttgttggtttttc
tacataggtttctgaggctggtgtccaggcaagcccttctattggattaa
gctgtctcctcagccccttacttttttttttttttaaacttttttttttt
aaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43692012_43692309
seq2: B6Ng01-304A21.b_51_348

seq1  ATTTTTGTGTATGTTAAGTGGGCTGGTGGGACATGACAACAACCAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGTATGTTAAGTGGGCTGGTGGGACATGACAACAACCAAATAA  50

seq1  ATGTTCTATTGTTGTTGTTGTTTTAATAGTGGGTAGACTTAAAGTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATTGTTGTTGTTGTTTTAATAGTGGGTAGACTTAAAGTGTAAA  100

seq1  GTGAATAAAATACTAAAAATTGAAGTCCTTTGAGATAAGAATCAGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAAATACTAAAAATTGAAGTCCTTTGAGATAAGAATCAGAGAAA  150

seq1  GACATTTACGTTGATACCTGACTAGGAAAACTAAACACGCCAACCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTACGTTGATACCTGACTAGGAAAACTAAACACGCCAACCTTCTC  200

seq1  TCTTAGTCCTAAAACCTCTGCAGTGCATTGTTGTCCCCCTTTCTGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCCTAAAACCTCTGCAGTGCATTGTTGTCCCCCTTTCTGGGACA  250

seq1  TTTTAAAAATAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  298

seq1: chr2_35143379_35143935
seq2: B6Ng01-304A21.g_881_1021 (reverse)

seq1  AGTTTTTTAGTTACGTAACACAGTTTGACTTTTTATCTTTTTTCGTGGAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTAGTGCCTTGCTCCCATATCTCACTAGCTATGTCAAGCTTGATATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATTCGACAAGAATAAGAAGCAGCTCTGAAATGAAGGACCCTGGGACCCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCCTGTAGGCACAGACCAAATAGTGTTGGTCACTCTGGTTCTTCCACG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AACCTCCTCTCATCACTGTATATTAAATTCAGGGAATGGCTCGTTAAACA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCACTCTGGAGAATTTTGTTCAAAGAATTTGATCTCTTCCTGCCTCAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAAAATTAGATTAGACAGCAACAATCAATCCCTCAAAAAAAAAAAGTT  350
                                  | |   | ||||||||||||||
seq2  ----------------------------AGT--TTTAAAAAAAAAAAGTT  20

seq1  TAAAAAACTAATAGAATGCCGGCCGGTGGTGGTGCACGCCTTTAATCCCA  400
      |||||||  || | | |   || | | || |    ||  | ||||||| |
seq2  TAAAAAAAAAAAAAAGTAAGGGGCTGAGGAG----ACAGC-TTAATCCAA  65

seq1  ACACTTGGGAGGCAGAGCAAGTGGATTTCTGAGTTTGAGGCCAGCCTGGT  450
           | | |||                               || ||  
seq2  -----TAGAAGG-------------------------------GCTTG--  77

seq1  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAACCCTGTCT  500
                    || ||||| ||||     | ||||||   ||| | |
seq2  --------------CCTGGACA-CCAG----CCTCAGAAA---CCTATGT  105

seq1  CGAAAAACAAACAAAACAAAACAAAACCAACCAACCAACCAACCAAACAA  550
       ||||||| |||||| |||                     ||||||||||
seq2  AGAAAAACCAACAAACCAA---------------------AACCAAACAA  134

seq1  ACAAAAA  557
      |||||||
seq2  ACAAAAA  141