BAC Information

Click to search

BAC

Clone NameB6Ng01-305C19
Chromosome2 (Build37)
Map Location 142,346,860 - 142,507,863
singlet/doubletdoublet
Overlap geneLOC668913, LOC668914, Kif16b
Upstream genenone
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C19.bB6Ng01-305C19.g
ACCGA098531GA098532
length1,188994
definitionB6Ng01-305C19.b B6Ng01-305C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,506,673 - 142,507,863)(142,346,860 - 142,347,834)
sequence
gaattcagttctggaactagttatgtcattaggctgaagtcagggctaca
tctgtgctcatccatagccttttgatttccagtatgtagtgatggctgat
aacttatattcctcactttgcctcccaatatctgattagtttaaacgaaa
taataccggggccattacttttgacttttgctgtaattttagagtagagt
aaatccgccccatttgtcatctgcacttgttgagtgctaccagagccttt
gttgggaatgaccatgggtttgaattccagggccttcatacgttctatca
aatttaccttcagtctaccagataaggcaagtatacagaaataagcatat
tggctcctattttgaaaatgttgaaattaaaccatgaaacaattattcct
ggttattcaagaaggctgggtttgggccagctaaaaagtgccatttgctt
taggaccacttcatagctgtctagaatataggtggtaattcatcacacag
ccctagagtcattttcctggtaccacagattcaaaccaaatcaaggctct
gagaccctcctgtactgttcatagtacatctttggagaagggcctcttgc
attttcctggagaatgggaaaaacagaaagatctaaagcttgcctgggac
tctgcttcatgaatctctattatccaagctccatgtacttcccacccatg
ttgtcaatactaggattagattcagactactttttgcttgcacattgcct
tggagtcctctgtcttgggaccagaccccttttgctgaggtccagcctct
ccattcaagtgtcctgagctgggactttagcagttgtctcgactgccagc
tcctaggacctgtggctgtggggagctatgcctgctcagttccttatgca
gtctgaaactagatacatggcaacttgtttcttcctccagagcttctgca
tgcccactgacaagatctctctccttgtacggctgccaggtgcaggagat
ggtcctcttctttaggctccctaggaggaagaaataaaggtgaacaccat
gagcatgatgtttcatgagccagccagagaaagggctgcactgtatgcca
aggaaatgccttacctcttccagacacagtgtgttccagcatggccagct
gttctggttctaagttcccttccagctaactgcgtgcc

gaattccatgcctttagttctagatgcataggaaaatagttaatgatgaa
gtattgttgatgcctggtttcttatcattcaagaagacaaggactttgtt
cactatctgttgtggataaccctagggctaattatatttgatgttaattc
cgttctcttgtgagtggctgcaaataaggaatgagtcagcactcaggtga
tatcctgtaaacctgcttcccaccttaatttttaaaataaaggagagctg
atgattgagcaaataaaagggaaggtggagggagagaagtaggagaaaat
agaagagggagagaatgcagaggaggaggaagaagaaaagcagggcagaa
gcacatagcacatagcctggagaatttgatggagaagatggtgcatagca
tgtattcatattaattgagtcatgttttaattgccaggcatatttggatt
ggagatttaccccaacaactatcagcaccattttgacacaggatcagata
gacacataaataattgaggaaggaaggagctggcagggcagggcaaggga
cttccatgtgatcaagattcagggatacaagacatgagtcccatgacagt
aacagccactcaaacaacagtacagcaggcatgaagctaaggtagaatct
caatctccaacaaacccaagagagagttaatgttcactccaacttatagg
tgggagagaattagagctttatagaaggtaaaatgattcctgtggtttaa
aaaagttggcacacggcaaaaactgggcatctgacccagagaactgacct
tcagatatcaccccttttttgccatgatctcactttccaaagttcaagtc
catgccttaggtaccaacaggagagtacttaggaatgcactctccattat
ccctctggagactacctgagaagtttgttcacatacaaatgaaaatggaa
ggaaaagaactacttctttgctttttacaataaagaaataagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142506673_142507863
seq2: B6Ng01-305C19.b_44_1231 (reverse)

seq1  GGCA-GCAGTTATAGCTGGAAGGGAAACCTAGGACCCAGGACAGGCTGTG  49
      |||| |||||  ||||||||||||||  ||  || |||| ||| |||| |
seq2  GGCACGCAGT--TAGCTGGAAGGGAA--CTTAGAACCAGAACA-GCTG-G  44

seq1  CTATGCTGGAACACAC--TGTCTGGTAGAGTGTTAAAGCCATTTCCTTGG  97
      | ||||||||||||||  ||||||| |||| ||  ||| |||||||||||
seq2  CCATGCTGGAACACACTGTGTCTGGAAGAG-GT--AAGGCATTTCCTTGG  91

seq1  CATACAGTGCAGCAC-TTCTCTGGCTTGCTCATGAACACTCATGCTCATG  146
      ||||||||||||| | |||||||||| |||||||||   |||||||||||
seq2  CATACAGTGCAGCCCTTTCTCTGGCTGGCTCATGAAACATCATGCTCATG  141

seq1  GGTTGTTCAC--TTATTTC-TCCTCCTAGTGAGCCTAAAGAAGA-GACCA  192
      |  |||||||  ||||||| ||||||||| |||||||||||||| |||||
seq2  G--TGTTCACCTTTATTTCTTCCTCCTAGGGAGCCTAAAGAAGAGGACCA  189

seq1  TCT-CTGCACCCTGGCAGCCGTACAAGGAGAGAGATCTTGTCAGTGGGCA  241
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCA-CCTGGCAGCCGTACAAGGAGAGAGATCTTGTCAGTGGGCA  238

seq1  TGCAGAAGCTCTGGAGGAAGAAACAAGTTGCCATGTATCTAGTTTCAGAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGCTCTGGAGGAAGAAACAAGTTGCCATGTATCTAGTTTCAGAC  288

seq1  TGCATAAGGAACTGAGCAGGCATAGCTCCCCACAGCCACAGGTCCTAGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGGAACTGAGCAGGCATAGCTCCCCACAGCCACAGGTCCTAGGA  338

seq1  GCTGGCAGTCGAGACAACTGCTAAAGTCCCAGCTCAGGACACTTGAATGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGTCGAGACAACTGCTAAAGTCCCAGCTCAGGACACTTGAATGG  388

seq1  AGAGGCTGGACCTCAGCAAAAGGGGTCTGGTCCCAAGACAGAGGACTCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGGACCTCAGCAAAAGGGGTCTGGTCCCAAGACAGAGGACTCCA  438

seq1  AGGCAATGTGCAAGCAAAAAGTAGTCTGAATCTAATCCTAGTATTGACAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGTGCAAGCAAAAAGTAGTCTGAATCTAATCCTAGTATTGACAA  488

seq1  CATGGGTGGGAAGTACATGGAGCTTGGATAATAGAGATTCATGAAGCAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGGGAAGTACATGGAGCTTGGATAATAGAGATTCATGAAGCAGA  538

seq1  GTCCCAGGCAAGCTTTAGATCTTTCTGTTTTTCCCATTCTCCAGGAAAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGCAAGCTTTAGATCTTTCTGTTTTTCCCATTCTCCAGGAAAAT  588

seq1  GCAAGAGGCCCTTCTCCAAAGATGTACTATGAACAGTACAGGAGGGTCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGCCCTTCTCCAAAGATGTACTATGAACAGTACAGGAGGGTCTC  638

seq1  AGAGCCTTGATTTGGTTTGAATCTGTGGTACCAGGAAAATGACTCTAGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTGATTTGGTTTGAATCTGTGGTACCAGGAAAATGACTCTAGGG  688

seq1  CTGTGTGATGAATTACCACCTATATTCTAGACAGCTATGAAGTGGTCCTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATGAATTACCACCTATATTCTAGACAGCTATGAAGTGGTCCTA  738

seq1  AAGCAAATGGCACTTTTTAGCTGGCCCAAACCCAGCCTTCTTGAATAACC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGGCACTTTTTAGCTGGCCCAAACCCAGCCTTCTTGAATAACC  788

seq1  AGGAATAATTGTTTCATGGTTTAATTTCAACATTTTCAAAATAGGAGCCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATTGTTTCATGGTTTAATTTCAACATTTTCAAAATAGGAGCCA  838

seq1  ATATGCTTATTTCTGTATACTTGCCTTATCTGGTAGACTGAAGGTAAATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTATTTCTGTATACTTGCCTTATCTGGTAGACTGAAGGTAAATT  888

seq1  TGATAGAACGTATGAAGGCCCTGGAATTCAAACCCATGGTCATTCCCAAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAACGTATGAAGGCCCTGGAATTCAAACCCATGGTCATTCCCAAC  938

seq1  AAAGGCTCTGGTAGCACTCAACAAGTGCAGATGACAAATGGGGCGGATTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCTGGTAGCACTCAACAAGTGCAGATGACAAATGGGGCGGATTT  988

seq1  ACTCTACTCTAAAATTACAGCAAAAGTCAAAAGTAATGGCCCCGGTATTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTCTAAAATTACAGCAAAAGTCAAAAGTAATGGCCCCGGTATTA  1038

seq1  TTTCGTTTAAACTAATCAGATATTGGGAGGCAAAGTGAGGAATATAAGTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTTAAACTAATCAGATATTGGGAGGCAAAGTGAGGAATATAAGTT  1088

seq1  ATCAGCCATCACTACATACTGGAAATCAAAAGGCTATGGATGAGCACAGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATCACTACATACTGGAAATCAAAAGGCTATGGATGAGCACAGA  1138

seq1  TGTAGCCCTGACTTCAGCCTAATGACATAACTAGTTCCAGAACTGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGACTTCAGCCTAATGACATAACTAGTTCCAGAACTGAATTC  1188


seq1: chr2_142346860_142347834
seq2: B6Ng01-305C19.g_67_1060

seq1  GAATTCCATGCCTTTAGTTCTAGATGCATAGGAAAATAGTTAATGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTTTAGTTCTAGATGCATAGGAAAATAGTTAATGATGAA  50

seq1  GTATTGTTGATGCCTGGTTTCTTATCATTCAAGAAGACAAGGACTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTGATGCCTGGTTTCTTATCATTCAAGAAGACAAGGACTTTGTT  100

seq1  CACTATCTGTTGTGGATAACCCTAGGGCTAATTATATTTGATGTTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCTGTTGTGGATAACCCTAGGGCTAATTATATTTGATGTTAATTC  150

seq1  CGTTCTCTTGTGAGTGGCTGCAAATAAGGAATGAGTCAGCACTCAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTTGTGAGTGGCTGCAAATAAGGAATGAGTCAGCACTCAGGTGA  200

seq1  TATCCTGTAAACCTGCTTCCCACCTTAATTTTTAAAATAAAGGAGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTAAACCTGCTTCCCACCTTAATTTTTAAAATAAAGGAGAGCTG  250

seq1  ATGATTGAGCAAATAAAAGGGAAGGTGGAGGGAGAGAAGTAGGAGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGAGCAAATAAAAGGGAAGGTGGAGGGAGAGAAGTAGGAGAAAAT  300

seq1  AGAAGAGGGAGAGAATGCAGAGGAGGAGGAAGAAGAAAAGCAGGGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGAGAGAATGCAGAGGAGGAGGAAGAAGAAAAGCAGGGCAGAA  350

seq1  GCACATAGCACATAGCCTGGAGAATTTGATGGAGAAGATGGTGCATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGCACATAGCCTGGAGAATTTGATGGAGAAGATGGTGCATAGCA  400

seq1  TGTATTCATATTAATTGAGTCATGTTTTAATTGCCAGGCATATTTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATATTAATTGAGTCATGTTTTAATTGCCAGGCATATTTGGATT  450

seq1  GGAGATTTACCCCAACAACTATCAGCACCATTTTGACACAGGATCAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTACCCCAACAACTATCAGCACCATTTTGACACAGGATCAGATA  500

seq1  GACACATAAATAATTGAGGAAGGAAGGAGCTGGCAGGGCAGGGCAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAAATAATTGAGGAAGGAAGGAGCTGGCAGGGCAGGGCAAGGGA  550

seq1  CTTCCATGTGATCAAGATTCAGGGATACAAGACATGAGTCCCATGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGTGATCAAGATTCAGGGATACAAGACATGAGTCCCATGACAGT  600

seq1  AACAGCCACTC-AACAACAGTACAGCAGGCATGAAGCTAAGGTAGAATCT  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCACTCAAACAACAGTACAGCAGGCATGAAGCTAAGGTAGAATCT  650

seq1  CAATCTCCAACAAACCCAAGAGAGAGTTAATGTTCACTCCAACTTATAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCAACAAACCCAAGAGAGAGTTAATGTTCACTCCAACTTATAGG  700

seq1  T-GGAGAG-ATTAGAGC-TTATAGAAGGT-AAATGATTCCTGTGGTT--A  743
      | |||||| |||||||| ||||||||||| |||||||||||||||||  |
seq2  TGGGAGAGAATTAGAGCTTTATAGAAGGTAAAATGATTCCTGTGGTTTAA  750

seq1  AAAAGTTGGCACACGGC-AAAACT-GGCATCTGACCCAGAGAACTGACC-  790
      ||||||||||||||||| |||||| |||||||||||||||||||||||| 
seq2  AAAAGTTGGCACACGGCAAAAACTGGGCATCTGACCCAGAGAACTGACCT  800

seq1  TCAGATATCACCC--TTTTTGCCATGATCTCACTT--CTAAGTTCAAGTC  836
      |||||||||||||  ||||||||||||||||||||  | |||||||||||
seq2  TCAGATATCACCCCTTTTTTGCCATGATCTCACTTTCCAAAGTTCAAGTC  850

seq1  CATG-CTTAGG-ACCAACAGGAGAGTACTTAGGAATGCACTC-CCAGTAT  883
      |||| |||||| |||||||||||||||||||||||||||||| ||| |||
seq2  CATGCCTTAGGTACCAACAGGAGAGTACTTAGGAATGCACTCTCCATTAT  900

seq1  -CCTCTGGAGGACTACCTGAGAAGTATGTTCACATAACAATGAAAATGGA  932
       |||||||| ||||||||||||||| ||||||||||  ||||||||||||
seq2  CCCTCTGGA-GACTACCTGAGAAGTTTGTTCACATACAAATGAAAATGGA  949

seq1  AAGGAAAGGACTACTT-ATTGCTTTGTACATTAAAG-AAGAAGAT  975
      | | |||| |||||||  ||||||| |||| ||||| || |||||
seq2  AGGAAAAGAACTACTTCTTTGCTTTTTACAATAAAGAAATAAGAT  994


| Home | SequenceCutter | Blast | Download |