BAC Information

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BAC

Clone NameB6Ng01-305I21
Chromosome2 (Build37)
Map Location 40,636,575 - 40,637,757
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305I21.bB6Ng01-305I21.g
ACCGA098817GA098818
length7361,175
definitionB6Ng01-305I21.b B6Ng01-305I21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaattcatacattcttagtgtcttgtacaaagatcaagtccaag
tggatcaaggacatccacataaaaccagatatgctgaatctaatagaaga
gaaagtggaaagatcttcaaaaacattagcacgggtaaaattttcctgaa
cagaacaccaagggctctaagttcaattgtagacaaatgggattgcaaag
gcaaaagacactgccaataggcaaaacagcaacctacagattaggaaaag
attgttacccacctatatccgatgaagggctaatatctaatatatacaaa
gaactcaagaagctagattccagagaaccaattaactctatttttaagag
atgtatagagctaaacaaagaattctcaactgaggaatcttgaatggctg
aaaagcaactaaatatagctgtctcttgtgagactatgccggggcctagc
aaacacagaagtggatgctcacagtcagctattggatgggtcacacggcc
cccaatggaggaactagaaaaagtacccaaggagctaaagggaactgcaa
ccctatatgtggaacaacaatatgaactaaccagtaccccggagttcttg
tctctagctgcatatgtatcaaaagatggcctagtcagccatcactggaa
agagaggccctttggacttgcaaactttatatgccccagtacaggggaac
gccagggccaaaaagggggagtgggtgggtagggga

gaattctatgagaccttcaaagaagagctaatatcaatactccttaaata
attccacaaaacagaaacagaaggaacactacctaattcattctttgaat
ccacagttactctgatacccaaaccacataaagacccaacaaagaaagat
aatttcagataaatctcgcttacaaattatggaaaaacaacaataaaaga
caaaatagccaaaacaattctcaacaattaataacttcagggggaatcac
caaccctgacctcaagctggatttacttcttgatatggtaaaagaaatta
ctagtatcatattttggttcaatctacatattcattgatttccatcatct
tacaagtggacggtgttcacatacatgttggtgaattaataccatctgga
tttctaggttacaatagaagaaaggactaaaagtaccaagtacccagttc
cacatgccatacattactgcagcaaagatcattaatgtctgcatgttgca
ggatcttcaatcacattgtgaactaaacattatgaactgaaaaaccttgt
tgtgttttggctcagacataccacatataatttttccaagagctttctgt
ttattctaaataattactctgctgtggctcagctctagcttataccttta
attcaaaaactaaataaattcaaccctagggcaagagccagaacaagcaa
ctaagctatcagggactgggtaaacagaagggaagatctttctgtgacat
ggcagagaaggaaagtctgccgctctgagctagcagattttcaccccagc
atctggctcttgtgtcttcattggtaaaaatcaaatgccttggatttttg
ttttaaaagcaatgttttggcgcacaaacacccagaccataatctttggc
ttatcccctatgagaacataatttaatatcccatatatccaacctaagtc
ctgtcatatgcctggtacctttgcttctaacctccatgtttctgggccaa
tcccctcacttgagatgctctatcccagaattctctctgcttcagaatat
acatcttttagtctacgcttttctatggtcataagatttcttttattgtc
agtgaatgcaccttacagtaaataagaagttctctctattcaggtcatga
gttaaccgtagattcactggatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40636575_40637757
seq2: B6Ng01-305I21.g_70_1244 (reverse)

seq1  GAGATCAAGTGAATCTACGTTAACCTCATGACCCTGATATAGAGAGAAAC  50
      |||||| |||||||||||| | | ||||||| ||||| ||||||||||  
seq2  GAGATCCAGTGAATCTACGGTTAACTCATGA-CCTGA-ATAGAGAGAACT  48

seq1  TCTTATGTACTGTATGGTTGCA-TCACTTGACAATAAAAGAAATCTTATG  99
      |||||| ||||||| || |||| |||| ||||||||||||||||||||||
seq2  TCTTATTTACTGTAAGG-TGCATTCAC-TGACAATAAAAGAAATCTTATG  96

seq1  ACCAATAGAAAAGCGTAGACTAAAAGATGGTATATCCTGAAAGCAGAGAG  149
      ||| |||||||||||||||||||||||| |||||| ||| ||||||||||
seq2  ACC-ATAGAAAAGCGTAGACTAAAAGAT-GTATATTCTG-AAGCAGAGAG  143

seq1  AATTCTGGGATAGAGCATCTCAAGTGAGGGGATTGGCCCAGAAACATGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGGATAGAGCATCTCAAGTGAGGGGATTGGCCCAGAAACATGGA  193

seq1  GGTTAGAAGCAAAGGTAACCAGGCATATGACAGGACTTAGGTTGGAATAT  249
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GGTTAGAAGCAAAGGT-ACCAGGCATATGACAGGACTTAGGTTGG-ATAT  241

seq1  ATGGGATATTAAATTATGTTCTCATAGGGGATAAGCCAAAGATTATGGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATATTAAATTATGTTCTCATAGGGGATAAGCCAAAGATTATGGTC  291

seq1  TGGGTGTTTGTGCGCCAAAACATTGCTTTTAAAACAAAAATCCAAGGCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTGTGCGCCAAAACATTGCTTTTAAAACAAAAATCCAAGGCAT  341

seq1  TTGATTTTTACCAATGAAGACACAAGAGCCAGATGCTGGGGTGAAAATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTACCAATGAAGACACAAGAGCCAGATGCTGGGGTGAAAATCT  391

seq1  GCTAGCTCAGAGCGGCAGACTTTCCTTCTCTGCCATGTCACAGAAAGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTCAGAGCGGCAGACTTTCCTTCTCTGCCATGTCACAGAAAGATC  441

seq1  TTCCCTTCTGTTTACCCAGTCCCTGATAGCTTAGTTGCTTGTTCTGGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTGTTTACCCAGTCCCTGATAGCTTAGTTGCTTGTTCTGGCTC  491

seq1  TTGCCCTAGGGTTGAATTTATTTAGTTTTTGAATTAAAGGTATAAGCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTAGGGTTGAATTTATTTAGTTTTTGAATTAAAGGTATAAGCTAG  541

seq1  AGCTGAGCCACAGCAGAGTAATTATTTAGAATAAACAGAAAGCTCTTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCCACAGCAGAGTAATTATTTAGAATAAACAGAAAGCTCTTGGA  591

seq1  AAAATTATATGTGGTATGTCTGAGCCAAAACACAACAAGGTTTTTCAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATATGTGGTATGTCTGAGCCAAAACACAACAAGGTTTTTCAGTT  641

seq1  CATAATGTTTAGTTCACAATGTGATTGAAGATCCTGCAACATGCAGACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTTTAGTTCACAATGTGATTGAAGATCCTGCAACATGCAGACAT  691

seq1  TAATGATCTTTGCTGCAGTAATGTATGGCATGTGGAACTGGGTACTTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCTTTGCTGCAGTAATGTATGGCATGTGGAACTGGGTACTTGGT  741

seq1  ACTTTTAGTCCTTTCTTCTATTGTAACCTAGAAATCCAGATGGTATTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGTCCTTTCTTCTATTGTAACCTAGAAATCCAGATGGTATTAAT  791

seq1  TCACCAACATGTATGTGAACACCGTCCACTTGTAAGATGATGGAAATCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACATGTATGTGAACACCGTCCACTTGTAAGATGATGGAAATCAA  841

seq1  TGAATATGTAGATTGAACCAAAATATGATACTAGTAATTTCTTTTACCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGTAGATTGAACCAAAATATGATACTAGTAATTTCTTTTACCAT  891

seq1  ATCAAGAAGTAAATCCAGCTTGAGGTCAGGGTTGGTGATTCCCCCTGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAGTAAATCCAGCTTGAGGTCAGGGTTGGTGATTCCCCCTGAAG  941

seq1  TTATTAATTGTTGAGAATTGTTTTGGCTATTTTGTCTTTTATTGTTGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATTGTTGAGAATTGTTTTGGCTATTTTGTCTTTTATTGTTGTTT  991

seq1  TTCCATAATTTGTAAGCGAGATTTATCTGAAATTATCTTTCTTTGTTGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATTTGTAAGCGAGATTTATCTGAAATTATCTTTCTTTGTTGGG  1041

seq1  TCTTTATGTGGTTTGGGTATCAGAGTAACTGTGGATTCAAAGAATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTGGTTTGGGTATCAGAGTAACTGTGGATTCAAAGAATGAATT  1091

seq1  AGGTAGTGTTCCTTCTGTTTCTGTTTTGTGGAATTATTTAAGGAGTATTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGTTCCTTCTGTTTCTGTTTTGTGGAATTATTTAAGGAGTATTG  1141

seq1  ATATTAGCTCTTCTTTGAAGGTCTCATAGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  ATATTAGCTCTTCTTTGAAGGTCTCATAGAATTC  1175


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