BAC Information

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BAC

Clone NameB6Ng01-306A01
Chromosome2 (Build37)
Map Location 49,342,111 - 49,391,052
singlet/doubletdoublet
Overlap geneEpc2
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
Downstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306A01.bB6Ng01-306A01.g
ACCGA099150GA099151
length1,1901,110
definitionB6Ng01-306A01.b B6Ng01-306A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,389,874 - 49,391,052)(49,342,111 - 49,343,226)
sequence
gaattctaatattctgtgaaagaatttggcatctttcatcttcttctgct
ggtattcacatgccacaggaggcattaaataaggaatattgatgcacttc
ccacttttagactgagcctacgttaccttgacatgaatgatctgttaatt
ccagctcacaaaaatatgacaaaaaacaaagttcttacagcgtaatactg
gcatcctgcccgtcttctgaaagcacaggaaccgtcagggtcattctcct
cctcagcctctgaagctggagacagcacctgggtaaaacagtgctccatt
tagcagttaccaagttaacacatcaatgtacataacgaatgaaaataaag
gcagatcacaagcaccttgcctacatccagcagctagctaatttgcctga
aacattaaatgactggtaaatattttctgtagctaaaaatcttaagattt
attcttgcatctaagcacacttggtactgtttttgaacgaaggctagaca
tatcactatagtttttatatatcccatttatagtcataaatagttcaggc
ataaatgcttgatgatgacaattatgcctcacctataggtagttgtcatt
tttatctggactttctttctataataaggtcaaatgctaggaagaagtgg
gcactggactctctggaagcagacagagcaagctgtgagctgccatgtgg
gtactggaagcacactcaggtcctctgtaagagcagcaagtgaactcaac
catctctctagctccttaaatcactgctgaaacctagcaactcacaaaca
gaaatttagcgaagtatataaaaacactggttgctgagagaaagtttacg
actacaacagtagaggaaaagtgtaaagagttgctacattaaaaaggatt
ttgccaggaccagatgctaccagccaaatatccttatataatctgaaaag
tattccctgggaaagaactgactcatagagcacagttttatgtcatgtca
gctaagtgatgatatagtataatatgaataaaaataaaactttgaataac
agcagaagaaacataaatattacgttccaccaggtatggttaaacaaaac
aacaaggcctaagttctttaaggtttgggtggtctcctcatctctcactt
agacagtaatccttcctcacaaatgccttgctcatcatat

gaattctttagaaattttggttgccagtgataatagtgtacatatttgtg
actgaaatatttttaggataacattctttttccattcagtatctttggat
atttttatttaaaaattgctcttctgatttttaaaatatgatttaaattt
tgttttgttttgttttgtttttttgagacagggtttctctgtatagccct
ggctgtcctggaattcactctgtagaccaggctggcctcgaactcagaaa
tccacctgcctctgcctcctgagtgctgggatcaaaggcgtgcaccacca
cacctggccgatttaaaatatttttaagatacaactaaaaagcttttagt
tataacagtgtttgttgtttttaaagcataaaagttagtggggtatttga
cattgtatttaaaaaaaccaatgacgtggaggggctcagcgattgagaac
acggctgctcttgcagtggaactgggtttcgtgcccagttctcctacgtg
gtagctcatagtcatccgtaacttttgagtgacatgaaacacctattgct
tacaatggtagactgaaatattattgataattactgcatctcacttacca
agctactaggagcccatgctatgtctgatggtgaaaattggattgtgctt
ggaatgtgacaccaaaaggcacacatcacctgcaaactgaagccatgtat
atatatagatagtgagaacatatcacatttatttttcatgacattatgat
ggtgttcacaaagttcatggttgagaaccactcaatttaattattaaaaa
tatcaaaaaaaatctcataatgtttaagtaaaggctgtgtttgagtcaca
ttcatagctattgtgcccattgtgggactgtggttgtgagtgtgggtgtt
gcctatatggaaaggcatgaatgaagttaattatctaagttcttaggctt
tatagaactttcaaaagtaaattgtataaatgatatatttaagaatttgc
ttcacatatgtagccagtcattatgaatatcactaaattatgtgaccttg
atagttactaagcatatttacacgtcagttactgtggagtgccactaatt
ttttattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49389874_49391052
seq2: B6Ng01-306A01.b_45_1234 (reverse)

seq1  ATATGATGAGGCAGGCATTTTGTGAGGAAAGAGATTACTG-CTAAGTGAG  49
      ||||||||||  ||||| |||||||||||   |||||||| |||||||||
seq2  ATATGATGAGCAAGGCA-TTTGTGAGGAA--GGATTACTGTCTAAGTGAG  47

seq1  A-TTGA-GAGACAACCCAAAC--TTAAGAACTAAGGCCT--TTGTGTTGT  93
      |  ||| ||||| ||||||||  | ||||||| ||||||  |||| ||||
seq2  AGATGAGGAGACCACCCAAACCTTAAAGAACTTAGGCCTTGTTGTTTTGT  97

seq1  TTAACCATTACT-GTGG-ACGTTATATTTATTGTTTC-TCTGCTGT--AT  138
      ||||||||  || |||| |||| ||||||| |||||| ||||||||   |
seq2  TTAACCATACCTGGTGGAACGTAATATTTA-TGTTTCTTCTGCTGTTATT  146

seq1  CAAAG---TATATTTTATCATA-TATACTATATCATCACTTAGCCTGACA  184
      |||||   ||| |||  ||||| |||||||||||||||||||| ||||||
seq2  CAAAGTTTTATTTTTATTCATATTATACTATATCATCACTTAG-CTGACA  195

seq1  TGACATAAAACTGTGCTCTATTGAGTCAGTTCTTTCCCA-GGAATACTTT  233
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TGACATAAAACTGTGCTCTA-TGAGTCAGTTCTTTCCCAGGGAATACTTT  244

seq1  TCAGATTATATAAGGATATTTGGCTGGTAGCATCTGGTCCTGGCAAAATC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTATATAAGGATATTTGGCTGGTAGCATCTGGTCCTGGCAAAATC  294

seq1  CTTTTTAATGTAGCAACTCTTTACACTTTTCCTCTACTGTTGTAGTCGTA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATGTAGCAACTCTTTACACTTTTCCTCTACTGTTGTAGTCGTA  344

seq1  AACTTTCTCTCAGCAACCAGTGTTTTTATATACTTCGCTAAATTTCTGTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTCTCAGCAACCAGTGTTTTTATATACTTCGCTAAATTTCTGTT  394

seq1  TGTGAGTTGCTAGGTTTCAGCAGTGATTTAAGGAGCTAGAGAGATGGTTG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGCTAGGTTTCAGCAGTGATTTAAGGAGCTAGAGAGATGGTTG  444

seq1  AGTTCACTTGCTGCTCTTACAGAGGACCTGAGTGTGCTTCCAGTACCCAC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTTGCTGCTCTTACAGAGGACCTGAGTGTGCTTCCAGTACCCAC  494

seq1  ATGGCAGCTCACAGCTTGCTCTGTCTGCTTCCAGAGAGTCCAGTGCCCAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTCACAGCTTGCTCTGTCTGCTTCCAGAGAGTCCAGTGCCCAC  544

seq1  TTCTTCCTAGCATTTGACCTTATTATAGAAAGAAAGTCCAGATAAAAATG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTAGCATTTGACCTTATTATAGAAAGAAAGTCCAGATAAAAATG  594

seq1  ACAACTACCTATAGGTGAGGCATAATTGTCATCATCAAGCATTTATGCCT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTACCTATAGGTGAGGCATAATTGTCATCATCAAGCATTTATGCCT  644

seq1  GAACTATTTATGACTATAAATGGGATATATAAAAACTATAGTGATATGTC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTTATGACTATAAATGGGATATATAAAAACTATAGTGATATGTC  694

seq1  TAGCCTTCGTTCAAAAACAGTACCAAGTGTGCTTAGATGCAAGAATAAAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCGTTCAAAAACAGTACCAAGTGTGCTTAGATGCAAGAATAAAT  744

seq1  CTTAAGATTTTTAGCTACAGAAAATATTTACCAGTCATTTAATGTTTCAG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGATTTTTAGCTACAGAAAATATTTACCAGTCATTTAATGTTTCAG  794

seq1  GCAAATTAGCTAGCTGCTGGATGTAGGCAAGGTGCTTGTGATCTGCCTTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTAGCTAGCTGCTGGATGTAGGCAAGGTGCTTGTGATCTGCCTTT  844

seq1  ATTTTCATTCGTTATGTACATTGATGTGTTAACTTGGTAACTGCTAAATG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTCGTTATGTACATTGATGTGTTAACTTGGTAACTGCTAAATG  894

seq1  GAGCACTGTTTTACCCAGGTGCTGTCTCCAGCTTCAGAGGCTGAGGAGGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGTTTTACCCAGGTGCTGTCTCCAGCTTCAGAGGCTGAGGAGGA  944

seq1  GAATGACCCTGACGGTTCCTGTGCTTTCAGAAGACGGGCAGGATGCCAGT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCCTGACGGTTCCTGTGCTTTCAGAAGACGGGCAGGATGCCAGT  994

seq1  ATTACGCTGTAAGAACTTTGTTTTTTGTCATATTTTTGTGAGCTGGAATT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGCTGTAAGAACTTTGTTTTTTGTCATATTTTTGTGAGCTGGAATT  1044

seq1  AACAGATCATTCATGTCAAGGTAACGTAGGCTCAGTCTAAAAGTGGGAAG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCATTCATGTCAAGGTAACGTAGGCTCAGTCTAAAAGTGGGAAG  1094

seq1  TGCATCAATATTCCTTATTTAATGCCTCCTGTGGCATGTGAATACCAGCA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATATTCCTTATTTAATGCCTCCTGTGGCATGTGAATACCAGCA  1144

seq1  GAAGAAGATGAAAGATGCCAAATTCTTTCACAGAATATTAGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGATGAAAGATGCCAAATTCTTTCACAGAATATTAGAATTC  1190


seq1: chr2_49342111_49343226
seq2: B6Ng01-306A01.g_66_1175

seq1  GAATTCTTTAGAAATTTTGGTTGCCAGTGATAATAGTGTACATATTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAAATTTTGGTTGCCAGTGATAATAGTGTACATATTTGTG  50

seq1  ACTGAAATATTTTTAGGATAACATTCTTTTTCCATTCAGTATCTTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATATTTTTAGGATAACATTCTTTTTCCATTCAGTATCTTTGGAT  100

seq1  ATTTTTATTTAAAAATTGCTCTTCTGATTTTTAAAATATGATTTAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTAAAAATTGCTCTTCTGATTTTTAAAATATGATTTAAATTT  150

seq1  TGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCT  200

seq1  GGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAA  250

seq1  TCCACCTGCCTCTGCCTCCTGAGTGCTGGGATCAAAGGCGTGCACCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCTGAGTGCTGGGATCAAAGGCGTGCACCACCA  300

seq1  CACCTGGCCGATTTAAAATATTTTTAAGATACAACTAAAAAGCTTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCCGATTTAAAATATTTTTAAGATACAACTAAAAAGCTTTTAGT  350

seq1  TATAACAGTGTTTGTTGTTTTTAAAGCATAAAAGTTAGTGGGGTATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGTGTTTGTTGTTTTTAAAGCATAAAAGTTAGTGGGGTATTTGA  400

seq1  CATTGTATTTAAAAAAACCAATGACGTGGAGGGGCTCAGCGATTGAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATTTAAAAAAACCAATGACGTGGAGGGGCTCAGCGATTGAGAAC  450

seq1  ACGGCTGCTCTTGCAGTGGAACTGGGTTTCGTGCCCAGTTCTCCTACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGCTCTTGCAGTGGAACTGGGTTTCGTGCCCAGTTCTCCTACGTG  500

seq1  GTAGCTCATAGTCATCCGTAACTTTTGAGTGACATGAAACACCTATTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCATAGTCATCCGTAACTTTTGAGTGACATGAAACACCTATTGCT  550

seq1  TACAATGGTAGACTGAAATATTATTGATAATTACTGCATCTCACTTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGTAGACTGAAATATTATTGATAATTACTGCATCTCACTTACCA  600

seq1  AGCTACTAGGAGCCCATGCTATGTCTGATGGTGAAAATTGGATTGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTAGGAGCCCATGCTATGTCTGATGGTGAAAATTGGATTGTGCTT  650

seq1  GGAATGTGACACCAAAAGGCACACATCACCTGCAAACTGAAGCCATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGACACCAAAAGGCACACATCACCTGCAAACTGAAGCCATGTAT  700

seq1  ATATATAGATAGTGAGAACATATCACATTTATTTTTCATGACATTATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGATAGTGAGAACATATCACATTTATTTTTCATGACATTATGAT  750

seq1  GGTGTTCACAAAGTTCATGGTTGAGAACCACTCAATTTAATTATTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCACAAAGTTCATGGTTGAGAACCACTCAATTTAATTATTAAAAA  800

seq1  TATCAAAAAAAATCTCATAATGTTTAAGT-AAGGCTGTGTTTGAGTCACA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATCAAAAAAAATCTCATAATGTTTAAGTAAAGGCTGTGTTTGAGTCACA  850

seq1  TTCATAGCTATTGTGCCCATTGTGGGACTGTGGTTGTGAGTGTGGGTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCTATTGTGCCCATTGTGGGACTGTGGTTGTGAGTGTGGGTGTT  900

seq1  GCCTATATGG-AAGGCATGAATGAAGTTAA-TATCTAAGTTCTTAGGCTT  947
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GCCTATATGGAAAGGCATGAATGAAGTTAATTATCTAAGTTCTTAGGCTT  950

seq1  TATAGAACTTCAAAAAGTAAAATTGTATAAATGATATAATTAAGAATTTG  997
      ||||||||||  |||||| ||||||||||||||||||| |||||||||| 
seq2  TATAGAACTTTCAAAAGT-AAATTGTATAAATGATATATTTAAGAATTT-  998

seq1  GCTTCAACATATGTAGCCAAGTTCATATATGATTTATCACTTAAAATTAT  1047
      ||||| |||||||||||||   |||| |||||  |||||||  |||||||
seq2  GCTTC-ACATATGTAGCCA--GTCAT-TATGA-ATATCACT--AAATTAT  1041

seq1  GTGACCATGATAAGTTACTAAGCATATTAACACCTCAGTTACT-TTGAGT  1096
      |||||| |||| |||||||||||||||| |||| ||||||||| | ||||
seq2  GTGACCTTGAT-AGTTACTAAGCATATTTACACGTCAGTTACTGTGGAGT  1090

seq1  GCAATATATTTTTTATTTTC  1116
      || |   |||||||||||||
seq2  GCCACTAATTTTTTATTTTC  1110


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