BAC Information

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BAC

Clone NameB6Ng01-306B04
Chromosome2 (Build37)X (Build37)
Map Location 114,671,048 - 114,671,21064,104,770 - 64,105,883
singlet/doubletsingletsinglet
Overlap geneLOC100043222
Upstream geneArhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219
Downstream geneLOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306B04.bB6Ng01-306B04.g
ACCGA099204GA099205
length9581,115
definitionB6Ng01-306B04.b B6Ng01-306B04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,671,048 - 114,671,210)(64,104,770 - 64,105,883)
sequence
gaattctcctgctcttgctacatgacggagaaaaatcagtttttagaatg
attgttgttggggtctgggaattgctgcacaaaccactcagagaacaatc
tcagtcaactagagatggtatattgaatgctacaccaagactgattgttt
agggacacaattcaggctcagaagctgaatcacaaccccaaagtaagggt
cttatggtgcttttgaaccctgagatctacaaacatctgtgtcaagttat
tccaccaataaagattcagtaacatatctttatagtacagttatcctgtt
cccatttgttgggatattcaattgtagcaggaggctttccttatttaaca
ttcatgtcttaacttgccagccaggacatcagttacccacatgcatgttt
ctttctgccaagtaggatgtcagtttctaggggtgtctcagaaacttaaa
ctttgtttgatccctactcaaaatggaagtcttattttaaatatatggag
gtgtctctcttatgctggggtccatcctagggataccttatgaaggaaaa
taccataaaaatttatatataagtgtagggagagctgctgggtggttggt
tctggtccattcttattgtgggtaacaatacaatgaagttctactgactt
ctatcatgataggtttccaaaggcatagaacatatagaatatgtaatcaa
cttgggcataagaaagtttcctagtaacaggaaaaaataacatatgagaa
agattccttataattttattaacagcacaaaatggcgggttagccatgta
agagttatccaggttttaacattttacttaggccttaacatacccctcta
ggcattacatcacgtaatccaaccccactcatctttttctccttttgtaa
ctaccctttgcctttttgtaagcattcccctacaaaagaaaattaaaaac
aaaaaatt

gaattctgtgaattctgtaagtgaagtaaacttatataaaaagactgtcc
ttttcctcatatcagcttaggatttcctcagacctctgaggtaaaatttc
tattcttttacattctgagatgtaattcttatgctctaactttaaagttc
agatctgtttagtaaaagtcagagcacaagaattctcaacctgctctatc
catatgtgtagcctatctctcacttatttaatactgaacattcatataac
atctcatctataatacaaatcttgacttgagtatgtaaaacaactacttc
ctttcttcttcaaattaaaaattataatttatacagagaacaaatatgct
tattttcttaaccgtatgtgtctatggaattttgagggtgaacatctgaa
aaaacattccttatattggagaggttctcccacttaagtatgtcacaatt
cttatggtatttaacttacatgcagaaagaaacatataagatgttaattg
tcatgaagcagaaatccattaatatatatttagtactttgtcttgtgtta
taagttattcataagcaacagataaccagaaacaagcacaaacagaattt
atacttacaaattgtttacttacacaatggcagtacacttcaattcctta
tgtaggtctactcatactcataactaaccagtatccttgtaactattcca
tagtcacacagaggagccagaagaatgctgcagagatacatgaagatatg
ctaacatcctgaatgcaaaaatgaaaacaggaaagaaattacctaaaaaa
aataccttttctatacagaagctacaaaagggtttgcagtaatcttttat
attacctacaccctttacatgacctttaattgccattggtaaaatgtttt
ccttaaactcaaatgaccccaaagatcatattccattgatgaaagaagaa
attctagaagcagttagaaaaaaaaaattacctatattcatgttggcaga
gtctcagaacatgttccttttgttacctcattgatttgatgatgcagatg
agaaaattctttactcagtcatgcaaaaaggtggagaataccatttatat
accttgaattaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114671048_114671210
seq2: B6Ng01-306B04.b_687_889

seq1  TTCTACTGACTTCTATCATGATTGGTTTCTAAGGGCAGAGAATATAAGAG  50
      |||||||||||||||||||||| |||||| || |||| |||| || | ||
seq2  TTCTACTGACTTCTATCATGATAGGTTTCCAAAGGCATAGAACAT-ATAG  49

seq1  AATATGTAATCAACTTGGGCACAAGAAAGTTTCCTAGTAAGAGCAGA---  97
      ||||||||||||||||||||| |||||||||||||||||| || | |   
seq2  AATATGTAATCAACTTGGGCATAAGAAAGTTTCCTAGTAACAGGAAAAAA  99

seq1  -AACA----AGGTAG--------------TAGTGAAAGCACAAAATGGCA  128
       ||||    ||  ||              || | | ||||||||||||| 
seq2  TAACATATGAGAAAGATTCCTTATAATTTTATTAACAGCACAAAATGGCG  149

seq1  GGTCAGCCAGGTAAGAGTTACCTAGGCCTTAACAT---------------  163
      ||| ||||| |||||||||| | |||  |||||||               
seq2  GGTTAGCCATGTAAGAGTTATCCAGGTTTTAACATTTTACTTAGGCCTTA  199

seq1  ----  163
          
seq2  ACAT  203


seq1: chrX_64104770_64105883
seq2: B6Ng01-306B04.g_67_1181

seq1  GAATTCTGTGAATTCTGTAAGTGAAGTAAACTTATATAAAAAGACTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAATTCTGTAAGTGAAGTAAACTTATATAAAAAGACTGTCC  50

seq1  TTTTCCTCATATCAGCTTAGGATTTCCTCAGACCTCTGAGGTAAAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCATATCAGCTTAGGATTTCCTCAGACCTCTGAGGTAAAATTTC  100

seq1  TATTCTTTTACATTCTGAGATGTAATTCTTATGCTCTAACTTTAAAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTACATTCTGAGATGTAATTCTTATGCTCTAACTTTAAAGTTC  150

seq1  AGATCTGTTTAGTAAAAGTCAGAGCACAAGAATTCTCAACCTGCTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTTTAGTAAAAGTCAGAGCACAAGAATTCTCAACCTGCTCTATC  200

seq1  CATATGTGTAGCCTATCTCTCACTTATTTAATACTGAACATTCATATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTAGCCTATCTCTCACTTATTTAATACTGAACATTCATATAAC  250

seq1  ATCTCATCTATAATACAAATCTTGACTTGAGTATGTAAAACAACTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCTATAATACAAATCTTGACTTGAGTATGTAAAACAACTACTTC  300

seq1  CTTTCTTCTTCAAATTAAAAATTATAATTTATACAGAGAACAAATATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTCAAATTAAAAATTATAATTTATACAGAGAACAAATATGCT  350

seq1  TATTTTCTTAACCGTATGTGTCTATGGAATTTTGAGGGTGAACATCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTAACCGTATGTGTCTATGGAATTTTGAGGGTGAACATCTGAA  400

seq1  AAAACATTCCTTATATTGGAGAGGTTCTCCCACTTAAGTATGTCACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCCTTATATTGGAGAGGTTCTCCCACTTAAGTATGTCACAATT  450

seq1  CTTATGGTATTTAACTTACATGCAGAAAGAAACATATAAGATGTTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTATTTAACTTACATGCAGAAAGAAACATATAAGATGTTAATTG  500

seq1  TCATGAAGCAGAAATCCATTAATATATATTTAGTACTTTGTCTTGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCAGAAATCCATTAATATATATTTAGTACTTTGTCTTGTGTTA  550

seq1  TAAGTTATTCATAAGCAACAGATAACCAGAAACAAGCACAAACAGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTCATAAGCAACAGATAACCAGAAACAAGCACAAACAGAATTT  600

seq1  ATACTTACAAATTGTTTACTTACACAATGGCAGTACACTTCAATTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACAAATTGTTTACTTACACAATGGCAGTACACTTCAATTCCTTA  650

seq1  TGTAGGTCTACTCATACTCATAACTAACCAGTATCCTTGTAACTATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTCTACTCATACTCATAACTAACCAGTATCCTTGTAACTATTCCA  700

seq1  TAGTCACACAGAGGAGCCAGAAGAATGCTGCAGAGATACATGAAGATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACACAGAGGAGCCAGAAGAATGCTGCAGAGATACATGAAGATATG  750

seq1  CTAACATCCTGAATGCAAAAATGAAAACAGGAAAGAAATTACCTAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATCCTGAATGCAAAAATGAAAACAGGAAAGAAATTACCTAAAAAA  800

seq1  AATACCTTTTCTATACAGAAGCTACAAAAGGGTTTGCAGTAATCTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTTTCTATACAGAAGCTACAAAAGGGTTTGCAGTAATCTTTTAT  850

seq1  ATTACCTACACCCTTTACATGACCTTTAATTGCCATTGGTAAAATGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTACACCCTTTACATGACCTTTAATTGCCATTGGTAAAATGTTTT  900

seq1  CCTTAAACTCAAATGACCCCAAAGATCATATTTCCATTGATG-AAGGAGA  949
      |||||||||||||||||||||||||||||| ||||||||||| ||| |||
seq2  CCTTAAACTCAAATGACCCCAAAGATCATA-TTCCATTGATGAAAGAAGA  949

seq1  AAATCTAGAAGCAGTTAG-AAAAAAAAATTACCTATATTCATGGTGGCAG  998
      || ||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  AATTCTAGAAGCAGTTAGAAAAAAAAAATTACCTATATTCATGTTGGCAG  999

seq1  AGTTCTCAG-ACATGGTCCTTTTG-TAACTCAATGATTTTGATGATGCAG  1046
      || |||||| ||||| |||||||| || |||| ||| |||||||||||| 
seq2  AG-TCTCAGAACATGTTCCTTTTGTTACCTCATTGA-TTTGATGATGCA-  1046

seq1  GATGAG-AAATTCTTTAACTCAGTCATGCAAAAAAGTGGAG-ATACCA-T  1093
      |||||| ||||||||| ||||||||||||||||| |||||| |||||| |
seq2  GATGAGAAAATTCTTT-ACTCAGTCATGCAAAAAGGTGGAGAATACCATT  1095

seq1  TATATAACTTGAAATTAAAAC  1114
      |||||| |||| |||||||||
seq2  TATATACCTTG-AATTAAAAC  1115


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