BAC Information

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BAC

Clone NameB6Ng01-306I16
Chromosome2 (Build37)
Map Location 64,711,622 - 64,853,327
singlet/doubletdoublet
Overlap geneGrb14
Upstream geneFign, LOC620544, LOC667291
Downstream geneCobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306I16.bB6Ng01-306I16.g
ACCGA099551GA099552
length1,1421,119
definitionB6Ng01-306I16.b B6Ng01-306I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,852,180 - 64,853,327)(64,711,622 - 64,712,771)
sequence
gaattcatcttcagatgaaaacaacatcagaaattgcatttaggtccccc
aagctattctacaaaattccatataatgtaaaatgaaacacacacacacg
cagaacgaataatagaaacaatacttgttttattattagagtgccaaatg
aaacgatctctgtaacagccatttgctcctcttgaatgctgctacttgat
gaatatcattgttattttggagaatataagagggtgcagatctttggagc
accattaaagcaggctctaagggcccaggcttctccataggtgtttacaa
aaacaccttccatgaagaatttggcctacttacagatgtccttgaagaat
aatgtccccaagaaggacaaggggaaatgaactctttacacgtttcctct
gctgggtgcacaaaatcagctattttcttccctgccacatttagactctg
tcaatatgcctttggaaaactgtggaaaaagctcttccgttgagagaagg
tggggatgctgccaatggactttggttgacaccttagcatgcattgatta
ggggaaacagaacctcgcatgaactggcctataaagttatgttttagtat
ccaaagaacaaaagttcaatggtctcatgagaaattagaattgcaaagta
aaaagtcagggggaaaaaaaaaccatataataaacagggccaccaagttc
tctctctttcctcctacagacactagctcgggcttcttacaacttcactt
tgtcctcttactttctgtatttttgttccccagtggctgtcccttggctc
tcttagtggtggttcagtatgtaacaactgtcaagagtctgtatattcag
ctttgaaacagttgtcatcaaggggcagagggccctagatcacactacct
gctcagctagtgtgtgggaggttcttccaaaggttcagtaggtgtggata
gagagacagaggaaaaaaaccccaacacctcaggtataaaaaagagctgt
accagagtgttgtggttgagagcacacaagcataccatatggacaatgca
tgacgatgtgactgctatctgctgtctgactggtggtgtgctcttcacct
tggcccaatggccttggcttgaattcatgattttacaagaag
gaattcctcactttagtgttggggctgacttctacctcatttaatttcat
ggatagttcagattctcatcagcaagtgtcttgcaaatatctactgtgga
gagccatgctgtgagcaatcgccattataagatggcactggcttccactg
cgcctaactagtaaacaagccttatgcgcaagtgcaagagtgaattcacg
cccagtcactgcccatctcggggcatagtaatggggtgatgtgcgagcaa
ctaatcaggtgctgtcacgccacatcaggtgctgaaacgtcacgctgtgg
gctatataagcagcgccattttctgggttggggtcttcctgagaagtaag
caataaaagctttgccgtagaaggatctggttgtctgagtgaattcttgc
cggcgagatactagctcgggcgagaatctacgattctaaccatgagcatt
ccagaaaggctacctggttgtgtccccaagccttttctcctagatagatt
ttgcctcactaagactttttcccttattctgtttttacttctcaataagc
aatagggaactcccttttggttttcctgcctcctctgtagaatggaattc
tgagtgtcccaagtaccttctaagaaacacaaggacgctgcactcgctgt
tcttattctgcaagtgtctgtataacatcaggcattatacaggggagcct
ctgtgataatgaaggttccaagggaaggaacgcacaggaaacagtaaggt
tggaaaaagacacctgcctagccaattggatcaactgaataaatcctggt
gaccaatgggatgacagatgtcacagccagattgctgaaagtttggaaaa
gccttgaactcattgctacagagacaacttcctgaatacaacaccagtgg
ttcaggctctaagatcagcaactgatataggaccccataatttggaaagc
ttctgtaaggcaaaagacactgtgagtaggacaaatgacagctacagact
ggaaaggatcttcacagctatatacatgaggctataccaatgtataagga
tcagaaatagaccccacatcattaccaatttagagtggtgcatggctcaa
gagaaatttcacagaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64852180_64853327
seq2: B6Ng01-306I16.b_46_1187 (reverse)

seq1  CTTCTTGTAAAATTCATGAATTCAAAGCAAG--CAATTGGCCA--GTGAG  46
      |||||||||||| ||||||||||||  ||||  || | |||||  |||| 
seq2  CTTCTTGTAAAA-TCATGAATTCAAGCCAAGGCCATTGGGCCAAGGTGAA  49

seq1  AAGCACACACCAAGTCAGACAGCAGATTAGCAGTCACCATCTGTCATGCA  96
       |||||||  | |||||||||||||| ||||||||| |||| ||||||||
seq2  GAGCACACCACCAGTCAGACAGCAGA-TAGCAGTCA-CATC-GTCATGCA  96

seq1  -TGTCCATTAATGGTATGCTTTGGTGTGCTCTCAACCAC-ACACTCTGGT  144
       |||||||  |||||||||||  |||||||||||||||| ||||||||||
seq2  TTGTCCAT--ATGGTATGCTT--GTGTGCTCTCAACCACAACACTCTGGT  142

seq1  ACAGCTCTTTTTTATACCTGAGGTTGTTGGGGTTTTTTTCCTCTGTCTCT  194
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAGCTCTTTTTTATACCTGAGG-TGTTGGGGTTTTTTTCCTCTGTCTCT  191

seq1  CTATTCCACACCTACTGAACCTTTTGGAAGAACCTCCCACACACTAGCTG  244
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTA-TCCACACCTACTGAACC-TTTGGAAGAACCTCCCACACACTAGCTG  239

seq1  AGCAGGTAGTGTGATCTAGGGCCCTCTGCCCCCTTGATGACAACTGTTTC  294
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCAGGTAGTGTGATCTAGGGCCCTCTG-CCCCTTGATGACAACTGTTTC  288

seq1  AAAGCTGAATATACAGACTCTTGACAGTTGTTACATACTGAACCACCACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAATATACAGACTCTTGACAGTTGTTACATACTGAACCACCACT  338

seq1  AAGAGAGCCAAGGGACAGCCACTGGGGAACAAAAATACAGAAAGTAAGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCCAAGGGACAGCCACTGGGGAACAAAAATACAGAAAGTAAGAG  388

seq1  GACAAAGTGAAGTTGTAAGAAGCCCGAGCTAGTGTCTGTAGGAGGAAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTGAAGTTGTAAGAAGCCCGAGCTAGTGTCTGTAGGAGGAAAGA  438

seq1  GAGAGAACTTGGTGGCCCTGTTTATTATATGGTTTTTTTTTCCCCCTGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTTGGTGGCCCTGTTTATTATATGGTTTTTTTTTCCCCCTGAC  488

seq1  TTTTTACTTTGCAATTCTAATTTCTCATGAGACCATTGAACTTTTGTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTGCAATTCTAATTTCTCATGAGACCATTGAACTTTTGTTCT  538

seq1  TTGGATACTAAAACATAACTTTATAGGCCAGTTCATGCGAGGTTCTGTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACTAAAACATAACTTTATAGGCCAGTTCATGCGAGGTTCTGTTT  588

seq1  CCCCTAATCAATGCATGCTAAGGTGTCAACCAAAGTCCATTGGCAGCATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATCAATGCATGCTAAGGTGTCAACCAAAGTCCATTGGCAGCATC  638

seq1  CCCACCTTCTCTCAACGGAAGAGCTTTTTCCACAGTTTTCCAAAGGCATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTCTCTCAACGGAAGAGCTTTTTCCACAGTTTTCCAAAGGCATA  688

seq1  TTGACAGAGTCTAAATGTGGCAGGGAAGAAAATAGCTGATTTTGTGCACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAGTCTAAATGTGGCAGGGAAGAAAATAGCTGATTTTGTGCACC  738

seq1  CAGCAGAGGAAACGTGTAAAGAGTTCATTTCCCCTTGTCCTTCTTGGGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGAAACGTGTAAAGAGTTCATTTCCCCTTGTCCTTCTTGGGGA  788

seq1  CATTATTCTTCAAGGACATCTGTAAGTAGGCCAAATTCTTCATGGAAGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTTCAAGGACATCTGTAAGTAGGCCAAATTCTTCATGGAAGGT  838

seq1  GTTTTTGTAAACACCTATGGAGAAGCCTGGGCCCTTAGAGCCTGCTTTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTAAACACCTATGGAGAAGCCTGGGCCCTTAGAGCCTGCTTTAA  888

seq1  TGGTGCTCCAAAGATCTGCACCCTCTTATATTCTCCAAAATAACAATGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCCAAAGATCTGCACCCTCTTATATTCTCCAAAATAACAATGAT  938

seq1  ATTCATCAAGTAGCAGCATTCAAGAGGAGCAAATGGCTGTTACAGAGATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAAGTAGCAGCATTCAAGAGGAGCAAATGGCTGTTACAGAGATC  988

seq1  GTTTCATTTGGCACTCTAATAATAAAACAAGTATTGTTTCTATTATTCGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTGGCACTCTAATAATAAAACAAGTATTGTTTCTATTATTCGT  1038

seq1  TCTGCGTGTGTGTGTGTTTCATTTTACATTATATGGAATTTTGTAGAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTGTGTGTGTGTTTCATTTTACATTATATGGAATTTTGTAGAATA  1088

seq1  GCTTGGGGGACCTAAATGCAATTTCTGATGTTGTTTTCATCTGAAGATGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGACCTAAATGCAATTTCTGATGTTGTTTTCATCTGAAGATGA  1138

seq1  ATTC  1148
      ||||
seq2  ATTC  1142

seq1: chr2_64711622_64712771
seq2: B6Ng01-306I16.g_66_1184

seq1  GAATTCCTCACTTTAGTGTTGGGGCTGACTTCTACCTCATTTAATTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTTTAGTGTTGGGGCTGACTTCTACCTCATTTAATTTCAT  50

seq1  GGATAGTTCAGATTCTCATCAGCAAGTGTCTTGCAAATATCTACTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTCAGATTCTCATCAGCAAGTGTCTTGCAAATATCTACTGTGGA  100

seq1  GAGCCATGCTGTGAGCAATCGCCATTATAAGATGGCACTGGCTTCCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATGCTGTGAGCAATCGCCATTATAAGATGGCACTGGCTTCCACTG  150

seq1  CGCCTAACTAGTAAACAAGCCTTATGCGCAAGTGCAAGAGTGAATTCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAACTAGTAAACAAGCCTTATGCGCAAGTGCAAGAGTGAATTCACG  200

seq1  CCCAGTCACTGCCCATCTCGGGGCATAGTAATGGGGTGATGTGCGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCACTGCCCATCTCGGGGCATAGTAATGGGGTGATGTGCGAGCAA  250

seq1  CTAATCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTCACGCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTCACGCTGTGG  300

seq1  GCTATATAAGCAGCGCCATTTTCTGGGTTGGGGTCTTCCTGAGAAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAAGCAGCGCCATTTTCTGGGTTGGGGTCTTCCTGAGAAGTAAG  350

seq1  CAATAAAAGCTTTGCCGTAGAAGGATCTGGTTGTCTGAGTGAATTCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAGCTTTGCCGTAGAAGGATCTGGTTGTCTGAGTGAATTCTTGC  400

seq1  CGGCGAGATACTAGCTCGGGCGAGAATCTACGATTCTAACCATGAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGAGATACTAGCTCGGGCGAGAATCTACGATTCTAACCATGAGCATT  450

seq1  CCAGAAAGGCTACCTGGTTGTGTCCCCAAGCCTTTTCTCCTAGATAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGGCTACCTGGTTGTGTCCCCAAGCCTTTTCTCCTAGATAGATT  500

seq1  TTGCCTCACTAAGACTTTTTCCCTTATTCTGTTTTTACTTCTCAATAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCACTAAGACTTTTTCCCTTATTCTGTTTTTACTTCTCAATAAGC  550

seq1  AATAGGGAACTCCCTTTTGGTTTTCCTGCCTCCTCTGTAGAATGGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGAACTCCCTTTTGGTTTTCCTGCCTCCTCTGTAGAATGGAATTC  600

seq1  TGAGTGTCCCAAGTACCTTCTAAGAAACACAAGGACGCTGCACTCGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCCCAAGTACCTTCTAAGAAACACAAGGACGCTGCACTCGCTGT  650

seq1  TCTTATTCTGCAAGTGTCTGTATAACATCAGGCATTATACAGGGGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCTGCAAGTGTCTGTATAACATCAGGCATTATACAGGGGAGCCT  700

seq1  CTGTGATAATGAAGGTTCCAAGGGAAGGAACGCACAGGAAACAGTAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAATGAAGGTTCCAAGGGAAGGAACGCACAGGAAACAGTAAGGT  750

seq1  TGGAAAAAGACACCTGCCTAGCCAATTGGATCAACTGAATAAATCCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAGACACCTGCCTAGCCAATTGGATCAACTGAATAAATCCTGGT  800

seq1  GACCAATGGGATGACAGATGTCACAGCCAGATTGCTGAAAGTTTGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGGGATGACAGATGTCACAGCCAGATTGCTGAAAGTTTGGAAAA  850

seq1  GCCTTGAACTCATTGCTACAAGAGACAACTTCCTGAATACAACACCAGTG  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCTTGAACTCATTGCTAC-AGAGACAACTTCCTGAATACAACACCAGTG  899

seq1  GTTCAGGCTCTAAGATCAGCAACTGATAATAGGACCCCATAAATTTGAAA  950
      ||||||||||||||||||||||||||| |||||||||||| |||||| ||
seq2  GTTCAGGCTCTAAGATCAGCAACTGAT-ATAGGACCCCAT-AATTTGGAA  947

seq1  AGCTTCTGTAAGGCAAAAGACACTGTGAGTAGGACAAAATGACAGCCTAC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AGCTTCTGTAAGGCAAAAGACACTGTGAGTAGGAC-AAATGACAG-CTAC  995

seq1  AGACTGGAAAAGGATCTTCAACAAGCCTATATACAATGGAGGGCTAATAC  1050
      ||||||| ||||||||||| |||   |||||||| |||   |||| ||||
seq2  AGACTGG-AAAGGATCTTC-ACA--GCTATATAC-ATG--AGGCT-ATAC  1037

seq1  CCAAAATGTATAAAGAATTCAAGAAATTAGACACCAACAATCCAAATAAC  1100
      |   ||||||||| ||  || ||||| ||||| |||   |||   || ||
seq2  C---AATGTATAAGGA--TC-AGAAA-TAGACCCCA--CATC---ATTAC  1075

seq1  CCAATTAAAAATGGGGTGCATGGCTCAAAAGAGAATTTTCAACAGAGGCA  1150
      | | ||| |   | ||||||||||||  ||||||| |||| |||||||||
seq2  CAATTTAGA---GTGGTGCATGGCTC--AAGAGAAATTTC-ACAGAGGCA  1119