BAC Information

Click to search

BAC

Clone NameB6Ng01-307B04
Chromosome2 (Build37)
Map Location 131,762,652 - 131,763,387
singlet/doubletsinglet
Overlap genePrnp
Upstream geneAtrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1
Downstream genePrnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307B04.bB6Ng01-307B04.g
ACCGA099940GA099941
length1,013739
definitionB6Ng01-307B04.b B6Ng01-307B04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtacctctcctgggcatatatccagaagatgt
cccaaccggtaagaaggacacatgctccactatgttcatagcagccttgt
ttataatagccagaagctggaaagaacccagatgcccctcaacagaggaa
tggatacagaaaatgtggtacatttacacaatggaatactactcagctat
ttaaaaaaatgaatttatgaaattcctaggcaaatggatggacctggagg
gtatcatcctgagtgaagtaacccaatcacaaaggaactcgcacaatatg
tactcactgataagtggatattagcccagaaacttaggatacccaagata
taacttgccaaacacatgaaattcaagaagaacaaagaccaaagtgtgga
cactttaccctttcttagaaatgggaacaaaacacccatagaaggagtta
cagagacaaaatttggagctgtgacaaaaggatggaccatctagtgattg
ccatatgcagggatccatcccataatcagcttccaaatgctgacaccatt
gcatacactagcaagattttgctgaaaggacccagatatagctctctctt
gtgagactatgccggggcctagcaaacacagaagtggatgatcacagtca
gctattggatgggtcacacggcccccaatggaggagctagagaaattacc
caaggagctaaagggaactgcaaccctataggtggaacaacaatatgaac
taaccagtacccgggagctcttgtctttagctgcatatgtatcaaaagat
ggcctagtcggccatcactgcaaagagaggcccattggacttgcaaactt
tatatgccccagtacaggggaaacgccaagggccaaaaagggggagtggg
gtgggggtagggg
gaattccacgtgtggatgctctagctatcccaggtgggaggctgttttcc
agggcgccatccccaaacagtggcttctttggttgtagaaccctttgcct
atgctaagttacatgtgtcactgtcaccttgtactctgggtacaagtcag
gggatacaccagtatttattcactagaccaaaacaaagccccaactagcc
agcagttatttggtgttatattcttattggcccggtgttagcactggctg
atgacagactccatcaaagggacctgaagcaaagagcaactggtctactg
tacatttcccagggcccatcagtgccaggggtattagcctatgggggaca
cagagaagcaagaatgagaaccacctcaattgaaagagctacaggtggat
aacccctcccccagcctagaccacgagaatgcgaaggaacaagcaggaag
gcctccctcatcccacgatcaggaagatgaggaaggagatgaggaggatg
acaggaggggaggagaaaagcacggtgctgctggatcttctcccgtcgta
ataggcctgggactccttctggtactgggtgacgcacatctgctccacca
cgcgctccatcatcttcacatcggtctcggtgaagttctccccctttggt
ggtggtggtgaccgtgtgctgcttgatggtgatattgacgcagtcgtgca
cgaagtttgttctgttttgctgtactgatccactggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131762652_131763387
seq2: B6Ng01-307B04.g_62_800 (reverse)

seq1  AGGCCAGTGGATCAGTACAGC-AACCAGAAC-AACTTCGTGCACGACTGC  48
      ||||||||||||||||||||| || |||||| ||||||||||||||||||
seq2  AGGCCAGTGGATCAGTACAGCAAAACAGAACAAACTTCGTGCACGACTGC  50

seq1  GTCAATATCACCATCAAGCAGCACACGGTCACCACCACCACC-AAGGGGG  97
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCAATATCACCATCAAGCAGCACACGGTCACCACCACCACCAAAGGGGG  100

seq1  AGAACTTCACCGAGACCGATGTGAAGATGATGGAGCGCGTGGTGGAGCAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCACCGAGACCGATGTGAAGATGATGGAGCGCGTGGTGGAGCAG  150

seq1  ATGTGCGTCACCCAGTACCAGAAGGAGTCCCAGGCCTATTACGACGGGAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTCACCCAGTACCAGAAGGAGTCCCAGGCCTATTACGACGGGAG  200

seq1  AAGATCCAGCAGCACCGTGCTTTTCTCCTCCCCTCCTGTCATCCTCCTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCAGCAGCACCGTGCTTTTCTCCTCCCCTCCTGTCATCCTCCTCA  250

seq1  TCTCCTTCCTCATCTTCCTGATCGTGGGATGAGGGAGGCCTTCCTGCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCTCATCTTCCTGATCGTGGGATGAGGGAGGCCTTCCTGCTTG  300

seq1  TTCCTTCGCATTCTCGTGGTCTAGGCTGGGGGAGGGGTTATCCACCTGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCGCATTCTCGTGGTCTAGGCTGGGGGAGGGGTTATCCACCTGTA  350

seq1  GCTCTTTCAATTGAGGTGGTTCTCATTCTTGCTTCTCTGTGTCCCCCATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCAATTGAGGTGGTTCTCATTCTTGCTTCTCTGTGTCCCCCATA  400

seq1  GGCTAATACCCCTGGCACTGATGGGCCCTGGGAAATGTACAGTAGACCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATACCCCTGGCACTGATGGGCCCTGGGAAATGTACAGTAGACCAG  450

seq1  TTGCTCTTTGCTTCAGGTCCCTTTGATGGAGTCTGTCATCAGCCAGTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTGCTTCAGGTCCCTTTGATGGAGTCTGTCATCAGCCAGTGCT  500

seq1  AACACCGGGCCAATAAGAATATAACACCAAATAACTGCTGGCTAGTTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCGGGCCAATAAGAATATAACACCAAATAACTGCTGGCTAGTTGGG  550

seq1  GCTTTGTTTTGGTCTAGTGAATAAATACTGGTGTATCCCCTGACTTGTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTTGGTCTAGTGAATAAATACTGGTGTATCCCCTGACTTGTAC  600

seq1  CCAGAGTACAAGGTGACAGTGACACATGTAACTTAGCATAGGCAAAGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTACAAGGTGACAGTGACACATGTAACTTAGCATAGGCAAAGGGT  650

seq1  TCTACAACCAAAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACCAAAGAAGCCACTGTTTGGGGATGGCGCCCTGGAAAACAGCC  700

seq1  TCCCACCTGGGATAGCTAGAGCATCCACACGTGGAATTC  736
      |||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGGGATAGCTAGAGCATCCACACGTGGAATTC  739