BAC Information

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BAC

Clone NameB6Ng01-307F04
Chromosome2 (Build37)
Map Location 181,665,504 - 181,666,003
singlet/doubletsinglet
Overlap genenone
Upstream geneBirc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881
Downstream geneLOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307F04.bB6Ng01-307F04.g
ACCGA100124GA100125
length377281
definitionB6Ng01-307F04.b B6Ng01-307F04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ccctatccctaatccagattggtggaataacttggtatagatgtttgtgc
attaaaaaccctgtaggatcttcactctaggtcactgttcagcactggaa
cctgaattgtggccctgagtgataggtcctgggacatatgcagttctgca
cagacagacagacagacagacagacagacagacagacagacgtacaaaca
aacacgtgagcgtgtgcaacacacacacaaacaccactcctggccataat
tattgaggacgtgattttattattctgtgtttgtgagtctgtctgtctgt
ctgtctgtctgtctgtctatcaaaccaaaagaaaccaaacaattatggct
gcctgcctgcctgcctggattcacaga
acagggaaatcatcactcagggacttcaggcagaaaactagccagtcagc
ctctggatagacaaggctcaacagttcagagaaccaggccatcgcaaata
gttcacagacctgcaaggaagacatgcagatccctgccccccaccccacc
cctcccccagccccacccaaacatagggagaaaaggcagtgtgggggagg
gggaggtgctgtgagagaatttaattagctcgaagatattattactggtg
acttcattttttatgatatttttgattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181665504_181666003
seq2: B6Ng01-307F04.b_49_431

seq1  GAATTCCCCTTATCCCTAAGTCCAGATTGGTGGAATAACTTGGTACAGAT  50
      ||||||||| ||||||||| ||||||||||||||||||||||||| ||||
seq2  GAATTCCCC-TATCCCTAA-TCCAGATTGGTGGAATAACTTGGTATAGAT  48

seq1  GTTTGTGGATTTTAGGCATTAAAAACCCTGTAGGATCTTCACTCTAGG--  98
      ||||||         |||||||||||||||||||||||||||||||||  
seq2  GTTTGT---------GCATTAAAAACCCTGTAGGATCTTCACTCTAGGTC  89

seq1  -----TCAGCTCTGGAACCTGAATTGTGGCCCTGAGTGATAGGTCCTGGG  143
           ||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGCACTGGAACCTGAATTGTGGCCCTGAGTGATAGGTCCTGGG  139

seq1  ACATATGCAGTTCTGC------------ACAGACAGACAGACAGACAGAT  181
      ||||||||||||||||            ||||||||||||||||||||| 
seq2  ACATATGCAGTTCTGCACAGACAGACAGACAGACAGACAGACAGACAGAC  189

seq1  GGACGGACGGACAAATAAACAC----GCTTG-------------------  208
       ||| |||| ||||| ||||||    || ||                   
seq2  AGACAGACGTACAAACAAACACGTGAGCGTGTGCAACACACACACAAACA  239

seq1  ------CTGGCTAAGATTCTTGAGGACGTGATTGTATTATTGTGTGTTTG  252
            ||||| |  ||| |||||||||||||| ||||||| ||||||||
seq2  CCACTCCTGGCCATAATTATTGAGGACGTGATTTTATTATTCTGTGTTTG  289

seq1  TGAGTGTGTGTGCGCGCGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTG  302
      |||                                    || ||| ||| 
seq2  TGA------------------------------------GTCTGTCTGTC  303

seq1  TGTCTGTCTGTCTGTCTGTCTCTATGGCCAACTAGGTTCCCCCTTACAGA  352
      |||||||||||||||||||||                             
seq2  TGTCTGTCTGTCTGTCTGTCT-----------------------------  324

seq1  TTTGTGTTTCAGAGATTCTTATTTATTTCTTGTATCTGTGCTTGCGTATG  402
                                                        
seq2  --------------------------------------------------  324

seq1  ACCTAGGCAACACATCCTGAAAAACAAACCAAACCAAAAGAAACCAAACA  452
                                 | |||||||||||||||||||||
seq2  ---------------------------ATCAAACCAAAAGAAACCAAACA  347

seq1  ATTATGGCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCACAGA  500
      |||||||            |||||||||||||||||||  ||||||||
seq2  ATTATGG------------CTGCCTGCCTGCCTGCCTGGATTCACAGA  383