BAC Information

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BAC

Clone NameB6Ng01-307K09
Chromosome2 (Build37)
Map Location 151,957,894 - 152,106,041
singlet/doubletdoublet
Overlap geneTcf15, LOC100043843, Csnk2a1
Upstream gene4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1
Downstream geneTbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307K09.bB6Ng01-307K09.g
ACCGA100365GA100366
length1,0131,134
definitionB6Ng01-307K09.b B6Ng01-307K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,105,028 - 152,106,041)(151,957,894 - 151,959,012)
sequence
gaattccaacactggatctttcacatatgaaggacaaagtattatatata
tacacacagcaaggaacggcagggccataacaagagaactgatagtttcc
cacaattacaggtctaccatctctggttcactggagatagtggctctgct
cctgcctctcaaaaaacacacttccaattctgagagcagggctcctcact
ggatggcatgtgaagaaagggcaaggcaggggggagaaaggacaaagctt
aaaatgaacccagtgcggccacatcacccattagctcataagagtgctag
catgaaacttatatggacaatatttcttttttaaaaagcaataaattatg
cccactaactaactgtcttcaaaatggccaagtcaaagaaaactgaaaaa
gattttgccttccctctcctagcagctatgaagcatagcatgtctggaga
cgaaaagggaaagaccaaagtaggagcccagaaagggaaagtatcacaaa
tagaaactcaactaaaattaaaatcatttagggttaggttagtaagacat
gattcgttcagaaaaaaaagctttggatctgtctgcacattgggtagact
tttaacatcttgatgtaaataagacagacccacctccaccagagccggag
taagccagggctgcagtcctggagagaagagatgaagtggccagccagca
gaacagtgttgtaggatggactgggtcctccccccctccacccccctccc
tgatgagctacagtttacaatctctggagaagaacatgagatataagcca
caagagtgtactattgtggaaagagcaacgtgggaaggggatgaaatttc
cacccaaacgcagcagctgggactgaggccagtttatcttgttctttagt
ggtgataaactgaatttgggaaggggaagaaaaaaatttgtccatgaaat
attcaacctgcagtaattttttcaggaatcccctgagttatggaaagtca
cgttttaaaaaaa
gaattcctcagtccagcatggagttccggtggattttatgggccagccac
aagcagacaaatggagaagaaaaacatccccccggagcccactcgcctct
cagaacctaacttccgctcagccggaaggatgctgggctgttttaaccct
gtgtgggaggtgacctcgggagatggattcaagaccctccaggctctcgc
cctgaattgacactagtctttcccaaagctcagctttccccccaagcttt
tggcaaagctgtctcaaaggtctcaagccccaggctggtgagtgagatgg
ctcagaggatgaggaagcctgacagccagagttcaatccttggaacccac
atggggaaaggagggaaatgatgattgcaagtttcttctgacctccacac
aagcatggtggcaacctcgcaaacaaacaagcatttaaaggccccagatg
cctattagtgagcaccgtacatctacttactggaaagtgcagtatgtccg
actggcagccaagtgtcctatgagactgagtccagggcaagtgtaggaaa
taggagaggcagtacggtgggtcagcatggcttgacactgtgcagaagga
gttggcgatccagctgggcctgtctggttggaaagatcttaatcctggcg
ttgcagacagagcagtctctctgaaactggcttcctgagagaatgcgtgc
cattggtgggtggggcagggaagtatgcccagtgtgcatactgctgacac
tcaacacataacagccattgttatgttgctgtcactcagtgtccttcctc
aaacctggcaggacacctcggcacccatatttcataaatggcacaagtgc
cgttacctgcctgttcttcactttctcacttagcaaccaggatcttaagc
accgagcagattaaattcccagtcagtcccggacaggttctgtgcaagtg
aagtttatcagaacttcacatcagcagacgtttcatggggggcagacggg
cgagggggtgggactggtggtgattttgtcacctttgagttaagttgcag
ttaagcaagaacagattcagccattgctgaacttccaatttcagctttct
ggccttgtcgcagtgtcacttcatgccaatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152105028_152106041
seq2: B6Ng01-307K09.b_43_1055 (reverse)

seq1  TTTTTTTAAAACGTGGACTTTTCATAACTCAGGGGATTCCCTGAAAAAAT  50
      |||||||||||||| |||||| |||||||||||||||| |||||||||||
seq2  TTTTTTTAAAACGT-GACTTTCCATAACTCAGGGGATT-CCTGAAAAAAT  48

seq1  TACCTGCAGGTGGAATATTTCATGGACAAAATTTTTTC-TCCCCTT-CCA  98
      || |||||||| |||||||||||||||||| ||||||| ||||||| |||
seq2  TA-CTGCAGGTTGAATATTTCATGGACAAATTTTTTTCTTCCCCTTCCCA  97

seq1  AATTCAGTTTATCACCACTAAAGAACAAAGATAAACTGGCCTCAGTCCCA  148
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATTCAGTTTATCACCACTAAAGAAC-AAGATAAACTGGCCTCAGTCCCA  146

seq1  GCTGCTGCGTTTGGGTGGAAATTTCATCCCCTTCCCACGTTGCTCTTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCGTTTGGGTGGAAATTTCATCCCCTTCCCACGTTGCTCTTTCC  196

seq1  AC-ATTGTACACTCTTGTGGCTTATATCTCATGTTCTTCTCCAGAGATTG  247
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTACACTCTTGTGGCTTATATCTCATGTTCTTCTCCAGAGATTG  246

seq1  TAAACTGTAGCTCATCAGGGGAGGGGGGGGGA-GGGGGGAGGACCCAGTC  296
      ||||||||||||||||| |||||||||| ||| |||||||||||||||||
seq2  TAAACTGTAGCTCATCA-GGGAGGGGGGTGGAGGGGGGGAGGACCCAGTC  295

seq1  CATCCTACAACACTGTTCTGCTGGCTGGCCACTTCATCTCTTCTCTCCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTACAACACTGTTCTGCTGGCTGGCCACTTCATCTCTTCTCTCCAG  345

seq1  GACTGCAGCCCTGGCTTACTCCGGCTCTGGTGGAGGTGGGTCTGTCTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGCCCTGGCTTACTCCGGCTCTGGTGGAGGTGGGTCTGTCTTAT  395

seq1  TTACATCAAGATGTTAAAAGTCTACCCAATGTGCAGACAGATCCAAAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCAAGATGTTAAAAGTCTACCCAATGTGCAGACAGATCCAAAGCT  445

seq1  TTTTTTTCTGAACGAATCATGTCTTACTAACCTAACCCTAAATGATTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGAACGAATCATGTCTTACTAACCTAACCCTAAATGATTTTA  495

seq1  ATTTTAGTTGAGTTTCTATTTGTGATACTTTCCCTTTCTGGGCTCCTACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTGAGTTTCTATTTGTGATACTTTCCCTTTCTGGGCTCCTACT  545

seq1  TTGGTCTTTCCCTTTTCGTCTCCAGACATGCTATGCTTCATAGCTGCTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTTCCCTTTTCGTCTCCAGACATGCTATGCTTCATAGCTGCTAG  595

seq1  GAGAGGGAAGGCAAAATCTTTTTCAGTTTTCTTTGACTTGGCCATTTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGGCAAAATCTTTTTCAGTTTTCTTTGACTTGGCCATTTTGA  645

seq1  AGACAGTTAGTTAGTGGGCATAATTTATTGCTTTTTAAAAAAGAAATATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTAGTTAGTGGGCATAATTTATTGCTTTTTAAAAAAGAAATATT  695

seq1  GTCCATATAAGTTTCATGCTAGCACTCTTATGAGCTAATGGGTGATGTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATAAGTTTCATGCTAGCACTCTTATGAGCTAATGGGTGATGTGG  745

seq1  CCGCACTGGGTTCATTTTAAGCTTTGTCCTTTCTCCCCCCTGCCTTGCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTGGGTTCATTTTAAGCTTTGTCCTTTCTCCCCCCTGCCTTGCCC  795

seq1  TTTCTTCACATGCCATCCAGTGAGGAGCCCTGCTCTCAGAATTGGAAGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCACATGCCATCCAGTGAGGAGCCCTGCTCTCAGAATTGGAAGTG  845

seq1  TGTTTTTTGAGAGGCAGGAGCAGAGCCACTATCTCCAGTGAACCAGAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGAGAGGCAGGAGCAGAGCCACTATCTCCAGTGAACCAGAGAT  895

seq1  GGTAGACCTGTAATTGTGGGAAACTATCAGTTCTCTTGTTATGGCCCTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACCTGTAATTGTGGGAAACTATCAGTTCTCTTGTTATGGCCCTGC  945

seq1  CGTTCCTTGCTGTGTGTATATATATAATACTTTGTCCTTCATATGTGAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTTGCTGTGTGTATATATATAATACTTTGTCCTTCATATGTGAAA  995

seq1  GATCCAGTGTTGGAATTC  1014
      ||||||||||||||||||
seq2  GATCCAGTGTTGGAATTC  1013

seq1: chr2_151957894_151959012
seq2: B6Ng01-307K09.g_66_1199

seq1  GAATTCCTCAGTCCAGCATGGAGTTCCGGTGGATTTTATGGGCCAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTCCAGCATGGAGTTCCGGTGGATTTTATGGGCCAGCCAC  50

seq1  AAGCAGACAAATGGAGAAGAAAAACATCCCCCCGGAGCCCACTCGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACAAATGGAGAAGAAAAACATCCCCCCGGAGCCCACTCGCCTCT  100

seq1  CAGAACCTAACTTCCGCTCAGCCGGAAGGATGCTGGGCTGTTTTAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTAACTTCCGCTCAGCCGGAAGGATGCTGGGCTGTTTTAACCCT  150

seq1  GTGTGGGAGGTGACCTCGGGAGATGGATTCAAGACCCTCCAGGCTCTCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGAGGTGACCTCGGGAGATGGATTCAAGACCCTCCAGGCTCTCGC  200

seq1  CCTGAATTGACACTAGTCTTTCCCAAAGCTCAGCTTTCCCCCCAAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTGACACTAGTCTTTCCCAAAGCTCAGCTTTCCCCCCAAGCTTT  250

seq1  TGGCAAAGCTGTCTCAAAGGTCTCAAGCCCCAGGCTGGTGAGTGAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGCTGTCTCAAAGGTCTCAAGCCCCAGGCTGGTGAGTGAGATGG  300

seq1  CTCAGAGGATGAGGAAGCCTGACAGCCAGAGTTCAATCCTTGGAACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGATGAGGAAGCCTGACAGCCAGAGTTCAATCCTTGGAACCCAC  350

seq1  ATGGGGAAAGGAGGGAAATGATGATTGCAAGTTTCTTCTGACCTCCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAAGGAGGGAAATGATGATTGCAAGTTTCTTCTGACCTCCACAC  400

seq1  AAGCATGGTGGCAACCTCGCAAACAAACAAGCATTTAAAGGCCCCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGTGGCAACCTCGCAAACAAACAAGCATTTAAAGGCCCCAGATG  450

seq1  CCTATTAGTGAGCACCGTACATCTACTTACTGGAAAGTGCAGTATGTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAGTGAGCACCGTACATCTACTTACTGGAAAGTGCAGTATGTCCG  500

seq1  ACTGGCAGCCAAGTGTCCTATGAGACTGAGTCCAGGGCAAGTGTAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGCCAAGTGTCCTATGAGACTGAGTCCAGGGCAAGTGTAGGAAA  550

seq1  TAGGAGAGGCAGTACGGTGGGTCAGCATGGCTTGACACTGTGCAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGGCAGTACGGTGGGTCAGCATGGCTTGACACTGTGCAGAAGGA  600

seq1  GTTGGCGATCCAGCTGGGCCTGTCTGGTTGGAAAGATCTTAATCCTGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCGATCCAGCTGGGCCTGTCTGGTTGGAAAGATCTTAATCCTGGCG  650

seq1  TTGCAGACAGAGCAGTCTCTCTGAAACTGGCTTCCTGAGAGAATGCGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACAGAGCAGTCTCTCTGAAACTGGCTTCCTGAGAGAATGCGTGC  700

seq1  CATTGGTGGGTGGGGCAGGGAAGTATGCCCAGTGTGCATACTGCTGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGGGTGGGGCAGGGAAGTATGCCCAGTGTGCATACTGCTGACAC  750

seq1  TCAACACATAACAGCCATTGTTATGTTGCTGTCACTCAGTGTCCTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACATAACAGCCATTGTTATGTTGCTGTCACTCAGTGTCCTTCCTC  800

seq1  AAACCTGGCAGGACACCTCGGCACCCATATTTCATAAATGGCACAAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGCAGGACACCTCGGCACCCATATTTCATAAATGGCACAAGTGC  850

seq1  CGTTACCTGCCTGTTCTTCACTTTCTCACTTAGCAACCAGGATCTTAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCTGCCTGTTCTTCACTTTCTCACTTAGCAACCAGGATCTTAAGC  900

seq1  ACCGAGCAGATTAAATT-CCAGTCAGTCCC-GACAGGTTCTGTGCAAGTG  948
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  ACCGAGCAGATTAAATTCCCAGTCAGTCCCGGACAGGTTCTGTGCAAGTG  950

seq1  AAGTTTATCAGAACTTCACATCAGCAGACG-TTCAT-GGGGGCAGACGGG  996
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AAGTTTATCAGAACTTCACATCAGCAGACGTTTCATGGGGGGCAGACGGG  1000

seq1  CGA-GGGGTGGGACTGGT-GTGAATTTGTCACC-TTGAG-TAAGTTGCAG  1042
      ||| |||||||||||||| |||| ||||||||| ||||| ||||||||||
seq2  CGAGGGGGTGGGACTGGTGGTGATTTTGTCACCTTTGAGTTAAGTTGCAG  1050

seq1  TTAAGGCCAG-ACAGA-TCAGC--ATGCTG-ACTCCCA--TTCAGCTTTC  1085
      |||| || || ||||| |||||   ||||| ||| |||  ||||||||||
seq2  TTAA-GCAAGAACAGATTCAGCCATTGCTGAACTTCCAATTTCAGCTTTC  1099

seq1  TG--CTTGTCCCAGTGTCACTTCATGCCACATTTCC  1119
      ||  |||||| |||||||||||||||||| ||||||
seq2  TGGCCTTGTCGCAGTGTCACTTCATGCCA-ATTTCC  1134