BAC Information

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BAC

Clone NameB6Ng01-308A09
Chromosome2 (Build37)
Map Location 16,647,444 - 16,757,626
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308A09.bB6Ng01-308A09.g
ACCGA100632GA100633
length1,195701
definitionB6Ng01-308A09.b B6Ng01-308A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,756,423 - 16,757,626)(16,647,444 - 16,648,144)
sequence
gaattcaccgttgctgcactcttgtggagggtcagcggtggctgtcaact
gttctgcctctcttgaatcaggtgctatgatagtcatatgtttattcaac
tctactttgtgggtgtcctgtcatcccaggattccctttaaaagtgttaa
tggacttaacaattacatatgctttgtctgcatataccttctctgtgttt
ttacacttgttcagactcctttccttgctaaacctaacatttttcataaa
gcctctctcaaatatacaaaacacacattcttcactagaatacaaggtaa
atgacttctaattccattcccaaggaaaccattgttcacttctgaaatct
catgagcacagtcttttctgtgtgcttttccacttgaatactggtctcta
gtggtttagccagaacggatccattctactttgcttagtctctggctgca
aactcctcctgattttttttccatatactaaatccaaaaattaaggaatt
agtttttggtcagatttatcacagtaataaacccccctttaagacttagt
tatcagtgtgtgcaacttttcccatcactatgatctgacaaaagtcactt
aagggagtaagacttctgactcacagcttgagggcgcaatcaagcatgaa
gaaaaaggatgaagatgaagatgtcttctggctgtggcagcagaactcca
agactgcttgtggctcactaattgcagaatggacagaaagtgagagtggg
ctctaaccttcaaggttcacaccacagtgatagatctccagctaagaacc
agttatgatagctaaattgatctagcatttaggcattccttcatctaaac
aaactttaaaaatttactataactttgtatattttgatatatagtaggaa
tagttgcttttccttttatttaaatttacttttcattgaaataaacgttt
taaatgcaatatattctgatcataacatcctcatttcctttcagatcctt
ctctgctgccacccttccactctctgccttctacttctttctctttttaa
gaaaaagacctggcaattaacaaagttcaacaagccaggatagacaaatt
gaaccgacggaccaaccagatcaggaggaattaggaaccccctccccgaa
tctggatccatagcatataaggaaattctccatataaggtaaaaa

gaattcttttatgatatttccaagaaaagcataagaattttgatctcatg
accagattccttgcaaccatacttaaacattcccgatttacagactctgt
tgggcagcacaagaagtctatacctgaggtatgtgcagggttttctttgg
catgcctccctgccaatttaatagatcaacgctggttattttacaaagat
gacgttttaatttattgtcttttctgaggagatattggtttcagtttgtt
tgagtgttatccctttaggtgcatgaattaatacccaataaaaggtgtca
ccaaggacttttttttttttacattttagtttggctttgagatactcata
attttgatgactcctgcatgttgtctacaaataaccatgtgaatatctta
ctgtattgtttgagaagtaatgaaaaattgaaaaccaaatggagaactta
gaatccaaatacatcaatgcagatagatgtttcagttcaacaacctttaa
cactccaatatcatcctgttatctgtggatccccaaagtcttagaaagca
gtgggaataaaggaggtttttttttttacagtatttatacaatgatgagg
gaaggaaaaatattggttaaattatgtgggagtagagaaatatgttctca
aaaaattattatatatatatatatatatatatatatatatatatatgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16756423_16757626
seq2: B6Ng01-308A09.b_47_1241 (reverse)

seq1  TTTTTACCT--TATTGAGCATTTCTTTATATACTATGGATCCAGATTTTG  48
      |||||||||  ||| ||| ||||| |||||| |||||||||||||||  |
seq2  TTTTTACCTTATATGGAGAATTTCCTTATATGCTATGGATCCAGATTCGG  50

seq1  TGTGTGTGTGTTTCTTATATTCTTTCTTTGTTTCTTGTTTGTCTGTCTGT  98
       | |   | | ||| || |||| | ||     ||| ||| ||| ||| ||
seq2  GGAG---GGGGTTCCTA-ATTCCTCCT---GATCTGGTTGGTCCGTCGGT  93

seq1  TCATTTTGTCTTATTCTTGCTTGTTTAACTTTGTTTATTTCCATGTCTTT  148
      ||| |||||| ||| || ||||||| ||||||||| ||| ||| ||||||
seq2  TCAATTTGTC-TATCCTGGCTTGTTGAACTTTGTTAATTGCCAGGTCTTT  142

seq1  TTCTT-AAAAGAGAAAGAAGGTAAGAAGGCAGAGAGTTGGAAGGGTGGCA  197
      ||||| ||||||||||||||   ||||||||||||| |||||||||||| 
seq2  TTCTTAAAAAGAGAAAGAAG--TAGAAGGCAGAGAG-TGGAAGGGTGGC-  188

seq1  AGCAGAGAAGGATCTGAAAGGAAATGAGGATGTTATGATCAGAATATATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAAGGATCTGAAAGGAAATGAGGATGTTATGATCAGAATATATT  238

seq1  GCATTTAAAACGTTTATTTCAATGAAAAGTAAATTTAAATAAAAGGAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAACGTTTATTTCAATGAAAAGTAAATTTAAATAAAAGGAAAA  288

seq1  GCAACTATTCCTACTATATATCAAAATATACAAAGTTATAGTAAATTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTATTCCTACTATATATCAAAATATACAAAGTTATAGTAAATTTTT  338

seq1  AAAGTTTGTTTAGATGAAGGAATGCCTAAATGCTAGATCAATTTAGCTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGTTTAGATGAAGGAATGCCTAAATGCTAGATCAATTTAGCTAT  388

seq1  CATAACTGGTTCTTAGCTGGAGATCTATCACTGTGGTGTGAACCTTGAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGGTTCTTAGCTGGAGATCTATCACTGTGGTGTGAACCTTGAAG  438

seq1  GTTAGAGCCCACTCTCACTTTCTGTCCATTCTGCAATTAGTGAGCCACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGCCCACTCTCACTTTCTGTCCATTCTGCAATTAGTGAGCCACAA  488

seq1  GCAGTCTTGGAGTTCTGCTGCCACAGCCAGAAGACATCTTCATCTTCATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTGGAGTTCTGCTGCCACAGCCAGAAGACATCTTCATCTTCATC  538

seq1  CTTTTTCTTCATGCTTGATTGCGCCCTCAAGCTGTGAGTCAGAAGTCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCATGCTTGATTGCGCCCTCAAGCTGTGAGTCAGAAGTCTTA  588

seq1  CTCCCTTAAGTGACTTTTGTCAGATCATAGTGATGGGAAAAGTTGCACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTAAGTGACTTTTGTCAGATCATAGTGATGGGAAAAGTTGCACAC  638

seq1  ACTGATAACTAAGTCTTAAAGGGGGGTTTATTACTGTGATAAATCTGACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAACTAAGTCTTAAAGGGGGGTTTATTACTGTGATAAATCTGACC  688

seq1  AAAAACTAATTCCTTAATTTTTGGATTTAGTATATGGAAAAAAAATCAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAATTCCTTAATTTTTGGATTTAGTATATGGAAAAAAAATCAGG  738

seq1  AGGAGTTTGCAGCCAGAGACTAAGCAAAGTAGAATGGATCCGTTCTGGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTGCAGCCAGAGACTAAGCAAAGTAGAATGGATCCGTTCTGGCT  788

seq1  AAACCACTAGAGACCAGTATTCAAGTGGAAAAGCACACAGAAAAGACTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTAGAGACCAGTATTCAAGTGGAAAAGCACACAGAAAAGACTGT  838

seq1  GCTCATGAGATTTCAGAAGTGAACAATGGTTTCCTTGGGAATGGAATTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGAGATTTCAGAAGTGAACAATGGTTTCCTTGGGAATGGAATTAG  888

seq1  AAGTCATTTACCTTGTATTCTAGTGAAGAATGTGTGTTTTGTATATTTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTTACCTTGTATTCTAGTGAAGAATGTGTGTTTTGTATATTTGA  938

seq1  GAGAGGCTTTATGAAAAATGTTAGGTTTAGCAAGGAAAGGAGTCTGAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTTTATGAAAAATGTTAGGTTTAGCAAGGAAAGGAGTCTGAACA  988

seq1  AGTGTAAAAACACAGAGAAGGTATATGCAGACAAAGCATATGTAATTGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAAACACAGAGAAGGTATATGCAGACAAAGCATATGTAATTGTT  1038

seq1  AAGTCCATTAACACTTTTAAAGGGAATCCTGGGATGACAGGACACCCACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTAACACTTTTAAAGGGAATCCTGGGATGACAGGACACCCACA  1088

seq1  AAGTAGAGTTGAATAAACATATGACTATCATAGCACCTGATTCAAGAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGTTGAATAAACATATGACTATCATAGCACCTGATTCAAGAGAG  1138

seq1  GCAGAACAGTTGACAGCCACCGCTGACCCTCCACAAGAGTGCAGCAACGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAGTTGACAGCCACCGCTGACCCTCCACAAGAGTGCAGCAACGG  1188

seq1  TGAATTC  1204
      |||||||
seq2  TGAATTC  1195


seq1: chr2_16647444_16648144
seq2: B6Ng01-308A09.g_66_766

seq1  GAATTCTTTTATGATATTTCCAAGAAAAGCATAAGAATTTTGATCTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATGATATTTCCAAGAAAAGCATAAGAATTTTGATCTCATG  50

seq1  ACCAGATTCCTTGCAACCATACTTAAACATTCCCGATTTACAGACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTCCTTGCAACCATACTTAAACATTCCCGATTTACAGACTCTGT  100

seq1  TGGGCAGCACAAGAAGTCTATACCTGAGGTATGTGCAGGGTTTTCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCACAAGAAGTCTATACCTGAGGTATGTGCAGGGTTTTCTTTGG  150

seq1  CATGCCTCCCTGCCAATTTAATAGATCAACGCTGGTTATTTTACAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCCCTGCCAATTTAATAGATCAACGCTGGTTATTTTACAAAGAT  200

seq1  GACGTTTTAATTTATTGTCTTTTCTGAGGAGATATTGGTTTCAGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTTAATTTATTGTCTTTTCTGAGGAGATATTGGTTTCAGTTTGTT  250

seq1  TGAGTGTTATCCCTTTAGGTGCATGAATTAATACCCAATAAAAGGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTATCCCTTTAGGTGCATGAATTAATACCCAATAAAAGGTGTCA  300

seq1  CCAAGGACTTTTTTTTTTTTACATTTTAGTTTGGCTTTGAGATACTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACTTTTTTTTTTTTACATTTTAGTTTGGCTTTGAGATACTCATA  350

seq1  ATTTTGATGACTCCTGCATGTTGTCTACAAATAACCATGTGAATATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGACTCCTGCATGTTGTCTACAAATAACCATGTGAATATCTTA  400

seq1  CTGTATTGTTTGAGAAGTAATGAAAAATTGAAAACCAAATGGAGAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTTTGAGAAGTAATGAAAAATTGAAAACCAAATGGAGAACTTA  450

seq1  GAATCCAAATACATCAATGCAGATAGATGTTTCAGTTCAACAACCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAATACATCAATGCAGATAGATGTTTCAGTTCAACAACCTTTAA  500

seq1  CACTCCAATATCATCCTGTTATCTGTGGATCCCCAAAGTCTTAGAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAATATCATCCTGTTATCTGTGGATCCCCAAAGTCTTAGAAAGCA  550

seq1  GTGGGAATAAAGGAGGTTTTTTTTTTTACAGTATTTATACAATGATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAATAAAGGAGGTTTTTTTTTTTACAGTATTTATACAATGATGAGG  600

seq1  GAAGGAAAAATATTGGTTAAATTATGTGGGAGTAGAGAAATATGTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAATATTGGTTAAATTATGTGGGAGTAGAGAAATATGTTCTCA  650

seq1  AAAAATTATTATATATATATATATATATATATATATATATATATATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTATATATATATATATATATATATATATATATATATATGTGT  700

seq1  G  701
      |
seq2  G  701


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