BAC Information

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BAC

Clone NameB6Ng01-309O18
Chromosome2 (Build37)
Map Location 54,785,744 - 54,925,448
singlet/doubletdoublet
Overlap geneGalnt13
Upstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309O18.bB6Ng01-309O18.g
ACCGA102042GA102043
length8031,127
definitionB6Ng01-309O18.b B6Ng01-309O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,924,646 - 54,925,448)(54,785,744 - 54,786,858)
sequence
gaattctgtacctctgttccacataaagaaacaaatatttttactgtata
ctgtgaaattacctcagtattgtatctctacgtggttactatgcattgga
tatacatttcttcctttttggaaattaataaaattagaggtgatgggtca
actttataaacacagatgcagtgtatacaagtcaatgtttctattttgtg
agttttatggttacatggtgctttctagaactggaaaaaaaattctttga
tttgcagtaaacctcaaagaggaaataggaatagttgtaatcttactggg
tgagagttggaagtggctagagattcccaaaccctatttcaattgtttga
tatttagttctgagttacaaacatgttcatcaagaaatctgggcaacaac
cccatggagtaggtagaaaacgcagtgtttactgcactaacagcaccttg
gcttccggtagtataccaaattgtgatatagtgttagtctgtattctcag
gctaatgaaagttgtttgagaattgagcctatagacaaatcattttcaag
actagctcatatatatcagaagtggggcttgatcttacatgggtcctgaa
caactggagtagtggctatcccaaatgctgttgcctgtatgtggtatata
ttcatctagggggcctgctgtttctgctctcattggttgaagatgtgcct
agattcacagagacttaatgtgccatggtgggaggataccctggatgcac
cccacctgctcataagcgaagaggatggaggatggagagggattgtggga
agg

gaattctcattgtatgaatcgtattggtttttatatgggattattcttct
ccccagatctggcaatgtggaggttctttggagattgtgacttgctctca
tgtcggtcatgtttttcgaaaggcaactccatacacattccctggtggca
ctggccatgtcattaacaagaacaacagaagactggcagaagtgtggatg
gatgaattcaaagatttcttctatatcatatccccaggtatgcagtgctg
aaatttgccatcttctaaaaggggaagtaaaattttaaacatgttgaata
tctgtttcattgttcttacaatcctaagagctaaagttaaatgttattca
ttatcagaatatcatggaaattttatgagagaatggtttaggctaaaata
attttcatctaaagtaacaatcttaaacaggcattttaaaaactctccta
actttttaaatatccattaaagaaaaatttacatgtagatattaaaattt
attttaatacatacaaggaaacttttaacttgtacttaaacaggaatgat
tttagtaaactgttaataaatttaaataaagaaccaatgaaacatttttg
catcctctaaaatttataaacatttaaatattacttatttgaaaaatact
ttagaaataaggagttttataataattcaatttcatgatgataaaatttt
gtgagagttacttttattatttctttttgatttatttctttctccaatag
caatattacttatttccccaaaagacagaatgttaatatattaaaatgag
aaaggaaataacagaaaatcgaagcatgaacatcggggctttaaatatat
ccagctttataaataaacaaacaaatatttaattacatacataaatgttg
caagagaagtataattattgcccttcatggtgtcaaaatgtagaatggaa
tatcaaaataaacaataaaaggattttgtatattataaacaaaactattg
aatgactttttctttgaatattttagaataatggcctcaaagtattcagt
ggacctccttatgctaacccatagaacaacaacattcacaccctttcata
tcctttcctacaataagtaatctatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54924646_54925448
seq2: B6Ng01-309O18.b_48_850 (reverse)

seq1  CCTTCCCACAATCCCTCTCCATCCTCCATCCTCTTCGCTTATGAGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACAATCCCTCTCCATCCTCCATCCTCTTCGCTTATGAGCAGGT  50

seq1  GGGGTGCATCCAGGGTATCCTCCCACCATGGCACATTAAGTCTCTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCATCCAGGGTATCCTCCCACCATGGCACATTAAGTCTCTGTGAA  100

seq1  TCTAGGCACATCTTCAACCAATGAGAGCAGAAACAGCAGGCCCCCTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCACATCTTCAACCAATGAGAGCAGAAACAGCAGGCCCCCTAGAT  150

seq1  GAATATATACCACATACAGGCAACAGCATTTGGGATAGCCACTACTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATACCACATACAGGCAACAGCATTTGGGATAGCCACTACTCCAG  200

seq1  TTGTTCAGGACCCATGTAAGATCAAGCCCCACTTCTGATATATATGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGGACCCATGTAAGATCAAGCCCCACTTCTGATATATATGAGCT  250

seq1  AGTCTTGAAAATGATTTGTCTATAGGCTCAATTCTCAAACAACTTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAAAATGATTTGTCTATAGGCTCAATTCTCAAACAACTTTCATT  300

seq1  AGCCTGAGAATACAGACTAACACTATATCACAATTTGGTATACTACCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGAATACAGACTAACACTATATCACAATTTGGTATACTACCGGA  350

seq1  AGCCAAGGTGCTGTTAGTGCAGTAAACACTGCGTTTTCTACCTACTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGTGCTGTTAGTGCAGTAAACACTGCGTTTTCTACCTACTCCAT  400

seq1  GGGGTTGTTGCCCAGATTTCTTGATGAACATGTTTGTAACTCAGAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGTTGCCCAGATTTCTTGATGAACATGTTTGTAACTCAGAACTAA  450

seq1  ATATCAAACAATTGAAATAGGGTTTGGGAATCTCTAGCCACTTCCAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACAATTGAAATAGGGTTTGGGAATCTCTAGCCACTTCCAACTC  500

seq1  TCACCCAGTAAGATTACAACTATTCCTATTTCCTCTTTGAGGTTTACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGTAAGATTACAACTATTCCTATTTCCTCTTTGAGGTTTACTGC  550

seq1  AAATCAAAGAATTTTTTTTCCAGTTCTAGAAAGCACCATGTAACCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGAATTTTTTTTCCAGTTCTAGAAAGCACCATGTAACCATAAA  600

seq1  ACTCACAAAATAGAAACATTGACTTGTATACACTGCATCTGTGTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAAATAGAAACATTGACTTGTATACACTGCATCTGTGTTTATAA  650

seq1  AGTTGACCCATCACCTCTAATTTTATTAATTTCCAAAAAGGAAGAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACCCATCACCTCTAATTTTATTAATTTCCAAAAAGGAAGAAATGT  700

seq1  ATATCCAATGCATAGTAACCACGTAGAGATACAATACTGAGGTAATTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATGCATAGTAACCACGTAGAGATACAATACTGAGGTAATTTCA  750

seq1  CAGTATACAGTAAAAATATTTGTTTCTTTATGTGGAACAGAGGTACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACAGTAAAAATATTTGTTTCTTTATGTGGAACAGAGGTACAGAA  800

seq1  TTC  803
      |||
seq2  TTC  803


seq1: chr2_54785744_54786858
seq2: B6Ng01-309O18.g_70_1196

seq1  GAATTCTCATTGTATGAATCGTATTGGTTTTTATATGGGATTATTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGTATGAATCGTATTGGTTTTTATATGGGATTATTCTTCT  50

seq1  CCCCAGATCTGGCAATGTGGAGGTTCTTTGGAGATTGTGACTTGCTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATCTGGCAATGTGGAGGTTCTTTGGAGATTGTGACTTGCTCTCA  100

seq1  TGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACATTCCCTGGTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACATTCCCTGGTGGCA  150

seq1  CTGGCCATGTCATTAACAAGAACAACAGAAGACTGGCAGAAGTGTGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGTCATTAACAAGAACAACAGAAGACTGGCAGAAGTGTGGATG  200

seq1  GATGAATTCAAAGATTTCTTCTATATCATATCCCCAGGTATGCAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTCAAAGATTTCTTCTATATCATATCCCCAGGTATGCAGTGCTG  250

seq1  AAATTTGCCATCTTCTAAAAGGGGAAGTAAAATTTTAAACATGTTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCCATCTTCTAAAAGGGGAAGTAAAATTTTAAACATGTTGAATA  300

seq1  TCTGTTTCATTGTTCTTACAATCCTAAGAGCTAAAGTTAAATGTTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCATTGTTCTTACAATCCTAAGAGCTAAAGTTAAATGTTATTCA  350

seq1  TTATCAGAATATCATGGAAATTTTATGAGAGAATGGTTTAGGCTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAATATCATGGAAATTTTATGAGAGAATGGTTTAGGCTAAAATA  400

seq1  ATTTTCATCTAAAGTAACAATCTTAAACAGGCATTTTAAAAACTCTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCTAAAGTAACAATCTTAAACAGGCATTTTAAAAACTCTCCTA  450

seq1  ACTTTTTAAATATCCATTAAAGAAAAATTTACATGTAGATATTAAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAATATCCATTAAAGAAAAATTTACATGTAGATATTAAAATTT  500

seq1  ATTTTAATACATACAAGGAAACTTTTAACTTGTACTTAAACAGGAATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATACATACAAGGAAACTTTTAACTTGTACTTAAACAGGAATGAT  550

seq1  TTTAGTAAACTGTTAATAAATTTAAATAAAGAACCAATGAAACATTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAACTGTTAATAAATTTAAATAAAGAACCAATGAAACATTTTTG  600

seq1  CATCCTCTAAAATTTATAAACATTTAAATATTACTTATTTGAAAAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTAAAATTTATAAACATTTAAATATTACTTATTTGAAAAATACT  650

seq1  TTAGAAATAAGGAGTTTTATAATAATTCAATTTCATGATGATAAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAAGGAGTTTTATAATAATTCAATTTCATGATGATAAAATTTT  700

seq1  GTGAGAGTTACTTTTATTATTTCTTTTTGATTTATTTCTTTCTCCAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTTACTTTTATTATTTCTTTTTGATTTATTTCTTTCTCCAATAG  750

seq1  CAATATTACTTATTTCCCCAAAAGACAGAATGTTAATATATTAAAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTACTTATTTCCCCAAAAGACAGAATGTTAATATATTAAAATGAG  800

seq1  -AAGGAAATAACAGAAAATCGAAGCATGAACATCGGGGCTTTAAATATAT  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATAACAGAAAATCGAAGCATGAACATCGGGGCTTTAAATATAT  850

seq1  CCAGCTTTATAAATAAACAAACAAATATTTAATTACATACATAAATGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTATAAATAAACAAACAAATATTTAATTACATACATAAATGTTG  900

seq1  CAAGAGAAGTATAATTATTG-CCTTCATGGTGTCAAAATGTAGAATGGAA  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAGAGAAGTATAATTATTGCCCTTCATGGTGTCAAAATGTAGAATGGAA  950

seq1  TATCAAAATAAAC-ATAAAAGGATTTTGTATA-TATTAACAAAACTATTG  996
      ||||||||||||| |||||||||||||||||| ||| |||||||||||||
seq2  TATCAAAATAAACAATAAAAGGATTTTGTATATTATAAACAAAACTATTG  1000

seq1  AATGAC-TTTTCTTTG-ATATTTTAGA--TATGGCTTCAAAGTATTCAGT  1042
      |||||| ||||||||| ||||||||||   ||||| ||||||||||||||
seq2  AATGACTTTTTCTTTGAATATTTTAGAATAATGGCCTCAAAGTATTCAGT  1050

seq1  -GACCTTCTTATGCT-ACCCATAGGAACAACAACAATTCACACC--TTCA  1088
       ||||| |||||||| ||||||| |||||||||| |||||||||  ||||
seq2  GGACCTCCTTATGCTAACCCATA-GAACAACAAC-ATTCACACCCTTTCA  1098

seq1  TATTCTTTCTCACA--TAGTAATCTATTA  1115
      ||| |||||  |||   ||||||||||||
seq2  TATCCTTTCCTACAATAAGTAATCTATTA  1127


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