BAC Information

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BAC

Clone NameB6Ng01-310B23
Chromosome2 (Build37)
Map Location 141,253,104 - 141,369,855
singlet/doubletdoublet
Overlap genenone
Upstream geneFlrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B23.bB6Ng01-310B23.g
ACCGA102188GA102189
length1,1071,172
definitionB6Ng01-310B23.b B6Ng01-310B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,253,104 - 141,254,220)(141,368,680 - 141,369,855)
sequence
gaattcagagaactttgggtatatacccaggatttgcagaactagatcac
gtggtctttctatttttagctttcggaaaaacctcaaaaatgatggttat
agtggtttcaccagactacactccccaaacagtgacaagggtctccctcc
ctcattccagtaacatgcacagaattttatgccatgtcaatacaacacac
taaacatattcttgaaaattttattctggttttccatttctatggtaatt
caacaaatcctgaatttctatgttaaatacaccagataacttacttgcta
aatcagtattcagattttttttcttatataactgttgtttaaaaccaaat
ttagattttatatattatcacggctggtttacggagaatgaatcccagag
cagatttacctgagtgtaagctctgtgcccctcactttactgtaaccggt
gacagtttttgctttatagctttaattcacacacacacaaaacaccctcc
cccccctccccacaatcagcctctttggctgtttcaaagcaacagtaggc
tattgaaacaggctcaggatttcagaggtctttcctcttttcttcctcaa
gaataagggcatttattgcattttcatggataccaagaatacagcatttg
ctggttaggtttggtttttttttttgtttttgttttttgtttttttttca
atgtgacacaaagtagtgtcacctaggaaaaaggcacttttcaagtgagg
attcacctctaccagactggcctgtgtgcatgtgtgtggagcattttctt
aattaatgatgggtgaaggagggcacagcccattgtgggtgatgctaccc
ctgtccaggtggtctgaggttatgtataaaagcagattgagcagagtatc
gaaagcaagccactaagcagcaacccatcacggtctctgcttgagttcca
gccctggcttgcctgaatgattgcctctagagtgtagggggctgatcttt
cagctccaggttgcctagtgtttatccagcacagagcatgttagaataca
gcatatactcagagtggtagagtcatagattaaattaggtaatgttacac
gaagcac

gaattcatactggtggcttatcaacctcaaacagtagctattcagaaata
ttaattaactgtgtggtaggtaaccatatttttttagcttgttacctata
actactttcctcatgatgaagtataaaaaaaaatagtgagaatcaacctc
ttcaaatggggggatgttggaaacggaggaggaagaaatgcaaaacccat
aagttgccttaacactgaattttttgtttttcttgtttgaagatagtcag
ttagaggatatagagaaaattggaacgggaaagaaattttaataaatgtc
attgagacccaagagattatacatcaatctgacttttccaagccttcata
atgaggagctctgtccaaagtcagaggatcatatttaattttacaccaga
gtcctgaattgagtgttataagggacacaatttgtttcatgggctttagt
tgttgttttcctgttcctctccaaacacttagcagtggagggatttctgt
gtgcagcctgttgaaaaacaaagtgttgtgtgtttattcagctaacattc
acactggggaacatttaagactgaggtgttcccactgaggaacgagcaga
cagggcattacaatttatctaccttcattgccttccagaaaatgaaaaca
tggcagccttttaacaacaggaatccattttgaagtgaaatattgcaagt
agctaagcaatagaactttatatgctccattcaatctaatttaggtcgtc
tgacccttgtccccttttgattagaaacttaaaatggctcccaatttctt
ttcaaccctaattgtcaaacttttcactcccttaccaacatatcttctag
tctcatggtgcagagaaccctctctggagaaattatatttcacaatgatt
gttgggtcttaactactacacatgaagttttcaaaggcccaaaattcatc
caattattgacttcagaaatatttatcaaacactggaaatgtattgagta
catgctcagtccgagactcagtgagcagcaaaataatacctgacctacct
caatgaactgagtagattgaaatagaatattatccagtatacatacagta
tgatactggtccgcaagttagaaaaaagcaagcaggtagaatctaaaccc
aagtgagaggccaattaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141253104_141254220
seq2: B6Ng01-310B23.b_44_1150

seq1  GAATTCAGAGAACTTTGGGTATATACCCAGGATTTGCAGAACTAGATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAACTTTGGGTATATACCCAGGATTTGCAGAACTAGATCAC  50

seq1  GTGGTCTTTCTATTTTTAGCTTTCGGAAAAACCTCAAAAATGATGGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTTCTATTTTTAGCTTTCGGAAAAACCTCAAAAATGATGGTTAT  100

seq1  AGTGGTTTCACCAGACTACACTCCCCAAACAGTGACAAGGGTCTCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTCACCAGACTACACTCCCCAAACAGTGACAAGGGTCTCCCTCC  150

seq1  CTCATTCCAGTAACATGCACAGAATTTTATGCCATGTCAATACAACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCAGTAACATGCACAGAATTTTATGCCATGTCAATACAACACAC  200

seq1  TAAACATATTCTTGAAAATTTTATTCTGGTTTTCCATTTCTATGGTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATATTCTTGAAAATTTTATTCTGGTTTTCCATTTCTATGGTAATT  250

seq1  CAACAAATCCTGAATTTCTATGTTAAATACACCAGATAACTTACTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATCCTGAATTTCTATGTTAAATACACCAGATAACTTACTTGCTA  300

seq1  AATCAGTATTCAGATTTTTTTTCTTATATAACTGTTGTTTAAAACCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTATTCAGATTTTTTTTCTTATATAACTGTTGTTTAAAACCAAAT  350

seq1  TTAGATTTTATATATTATCACGGCTGGTTTACGGAGAATGAATCCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTATATATTATCACGGCTGGTTTACGGAGAATGAATCCCAGAG  400

seq1  CAGATTTACCTGAGTGTAAGCTCTGTGCCCCTCACTTTACTGTAACCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTACCTGAGTGTAAGCTCTGTGCCCCTCACTTTACTGTAACCGGT  450

seq1  GACAGTTTTTGCTTTATAGCTTTAATTCACACACACACAAAACACCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTTTGCTTTATAGCTTTAATTCACACACACACAAAACACCCTCC  500

seq1  CCCCCCTCCCCACAATCAGCCTCTTTGGCTGTTTCAAAGCAACAGTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCCCCACAATCAGCCTCTTTGGCTGTTTCAAAGCAACAGTAGGC  550

seq1  TATTGAAACAGGCTCAGGATTTCAGAGGTCTTTCCTCTTTTCTTCCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAACAGGCTCAGGATTTCAGAGGTCTTTCCTCTTTTCTTCCTCAA  600

seq1  GAATAAGGGCATTTATTGCATTTTCATGGATACCAAGAATACAGCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGGCATTTATTGCATTTTCATGGATACCAAGAATACAGCATTTG  650

seq1  CTGGTTAGGTTTGGTTTTTTTTTTTGTTTTTGTTTTTTGTTTTTTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGGTTTGGTTTTTTTTTTTGTTTTTGTTTTTTGTTTTTTTTTCA  700

seq1  ATGTGACACAAAGTAGTGTCACCTAGGAAAAAGGCACTTTTCAAGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACACAAAGTAGTGTCACCTAGGAAAAAGGCACTTTTCAAGTGAGG  750

seq1  ATTCACCTCTACCAGACTGGCCTGTGTGCATGTGTGTGGAGCATTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCTACCAGACTGGCCTGTGTGCATGTGTGTGGAGCATTTTCTT  800

seq1  AATTAATGATGGGTGAAGGAGGGCACAGCCCATTGTGGGTGATGCTACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGATGGGTGAAGGAGGGCACAGCCCATTGTGGGTGATGCTACCC  850

seq1  CTGTCCAGGTGGTCTGAGGTTATGTATAAAAGCAGATTGAGCAGAGTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGGTGGTCTGAGGTTATGTATAAAAGCAGATTGAGCAGAGTATC  900

seq1  GAAAGCAAGCCACTAAGCAGCAACCCATCACGGTCTCTGCTTGAGTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGCCACTAAGCAGCAACCCATCACGGTCTCTGCTTGAGTTCCA  950

seq1  GCCCTGGCTTGCCTGAATGATTGCCTCTAGAGTGTAAGGGGGCTGAATCT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||| ||| 
seq2  GCCCTGGCTTGCCTGAATGATTGCCTCTAGAGTGT-AGGGGGCTG-ATC-  997

seq1  TTTCAGCTCCAAGTTGCCTAGTGTTTATCCCAGCAACAAGAAGCAATGTA  1050
      ||||||||||| |||||||||||||||| ||||| |||   ||||   ||
seq2  TTTCAGCTCCAGGTTGCCTAGTGTTTAT-CCAGC-ACA--GAGCATGTTA  1043

seq1  GAATACAGCATATTACTCAGAGTGGTAGAGTTCATAGAATTAAATTTAGT  1100
      |||||||||||| ||||||||||||||||| |||||| ||||||||  ||
seq2  GAATACAGCATA-TACTCAGAGTGGTAGAG-TCATAG-ATTAAATTAGGT  1090

seq1  AATGTTAACAGAAGCAC  1117
      |||||||   |||||||
seq2  AATGTTACACGAAGCAC  1107


seq1: chr2_141368680_141369855
seq2: B6Ng01-310B23.g_63_1234 (reverse)

seq1  ACCTTTA--TTCCCTCTCCCTGGGTTTTAGTATCTACCTGCTTTGCTTTT  48
      |||||||  |  |||||| || || |||||  ||||||||| |||| |||
seq2  ACCTTTAATTGGCCTCTCACTTGGGTTTAGATTCTACCTGC-TTGC-TTT  48

seq1  TTTCTTACTTGCGGAACAGTATCATATTTGTATGTATATTTGAATATA-T  97
      ||||| ||||||||| ||||||||||  |||||||||| | ||  ||| |
seq2  TTTCTAACTTGCGGACCAGTATCATA-CTGTATGTATACTGGATAATATT  97

seq1  CTATTTCAATCTAATTCAGTTCATTGAGGTTAGGGTCAAGGTA-TATTTT  146
      |||||||||||| | |||||||||||||||   |||| ||||| ||||||
seq2  CTATTTCAATCT-ACTCAGTTCATTGAGGT--AGGTC-AGGTATTATTTT  143

seq1  GCTGCTCACTGAGTCTCGGACTGAGCATGTTACTCAATACATTTCCAGTG  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGCTCACTGAGTCTCGGACTGAGCATG-TACTCAATACATTTCCAGTG  192

seq1  TTTGATAAATATTTCTGAAGTCAATAATTGGATGAATTTTGGGCCTTTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAATATTTCTGAAGTCAATAATTGGATGAATTTTGGGCCTTTGA  242

seq1  AAACTTCATGTGTAGTAGTTAAGACCCAACAATCATTGTGAAATATAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCATGTGTAGTAGTTAAGACCCAACAATCATTGTGAAATATAATT  292

seq1  TCTCCAGAGAGGGTTCTCTGCACCATGAGACTAGAAGATATGTTGGTAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGAGGGTTCTCTGCACCATGAGACTAGAAGATATGTTGGTAAG  342

seq1  GGAGTGAAAAGTTTGACAATTAGGGTTGAAAAGAAATTGGGAGCCATTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAAAGTTTGACAATTAGGGTTGAAAAGAAATTGGGAGCCATTTT  392

seq1  AAGTTTCTAATCAAAAGGGGACAAGGGTCAGACGACCTAAATTAGATTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTAATCAAAAGGGGACAAGGGTCAGACGACCTAAATTAGATTGA  442

seq1  ATGGAGCATATAAAGTTCTATTGCTTAGCTACTTGCAATATTTCACTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCATATAAAGTTCTATTGCTTAGCTACTTGCAATATTTCACTTCA  492

seq1  AAATGGATTCCTGTTGTTAAAAGGCTGCCATGTTTTCATTTTCTGGAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTCCTGTTGTTAAAAGGCTGCCATGTTTTCATTTTCTGGAAGG  542

seq1  CAATGAAGGTAGATAAATTGTAATGCCCTGTCTGCTCGTTCCTCAGTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGGTAGATAAATTGTAATGCCCTGTCTGCTCGTTCCTCAGTGGG  592

seq1  AACACCTCAGTCTTAAATGTTCCCCAGTGTGAATGTTAGCTGAATAAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCAGTCTTAAATGTTCCCCAGTGTGAATGTTAGCTGAATAAACA  642

seq1  CACAACACTTTGTTTTTCAACAGGCTGCACACAGAAATCCCTCCACTGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTTTGTTTTTCAACAGGCTGCACACAGAAATCCCTCCACTGCT  692

seq1  AAGTGTTTGGAGAGGAACAGGAAAACAACAACTAAAGCCCATGAAACAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGGAGAGGAACAGGAAAACAACAACTAAAGCCCATGAAACAAA  742

seq1  TTGTGTCCCTTATAACACTCAATTCAGGACTCTGGTGTAAAATTAAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCCTTATAACACTCAATTCAGGACTCTGGTGTAAAATTAAATAT  792

seq1  GATCCTCTGACTTTGGACAGAGCTCCTCATTATGAAGGCTTGGAAAAGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTGACTTTGGACAGAGCTCCTCATTATGAAGGCTTGGAAAAGTC  842

seq1  AGATTGATGTATAATCTCTTGGGTCTCAATGACATTTATTAAAATTTCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGATGTATAATCTCTTGGGTCTCAATGACATTTATTAAAATTTCTT  892

seq1  TCCCGTTCCAATTTTCTCTATATCCTCTAACTGACTATCTTCAAACAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTCCAATTTTCTCTATATCCTCTAACTGACTATCTTCAAACAAGA  942

seq1  AAAACAAAAAATTCAGTGTTAAGGCAACTTATGGGTTTTGCATTTCTTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAATTCAGTGTTAAGGCAACTTATGGGTTTTGCATTTCTTCC  992

seq1  TCCTCCGTTTCCAACATCCCCCCATTTGAAGAGGTTGATTCTCACTATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGTTTCCAACATCCCCCCATTTGAAGAGGTTGATTCTCACTATTT  1042

seq1  TTTTTTATACTTCATCATGAGGAAAGTAGTTATAGGTAACAAGCTAAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATACTTCATCATGAGGAAAGTAGTTATAGGTAACAAGCTAAAAA  1092

seq1  AATATGGTTACCTACCACACAGTTAATTAATATTTCTGAATAGCTACTGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTTACCTACCACACAGTTAATTAATATTTCTGAATAGCTACTGT  1142

seq1  TTGAGGTTGATAAGCCACCAGTATGAATTC  1176
      ||||||||||||||||||||||||||||||
seq2  TTGAGGTTGATAAGCCACCAGTATGAATTC  1172


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