BAC Information

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BAC

Clone NameB6Ng01-310F19
Chromosome2 (Build37)
Map Location 104,898,943 - 105,064,183
singlet/doubletdoublet
Overlap geneLOC622356, Wt1
Upstream geneFbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik
Downstream gene0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310F19.bB6Ng01-310F19.g
ACCGA102359GA102360
length7221,123
definitionB6Ng01-310F19.b B6Ng01-310F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,063,137 - 105,064,183)(104,898,943 - 104,900,024)
sequence
gaattcacccgagggtctccaggtatcttctggacttgatgctctgacct
ctgaataaaagctgttcttggcctctatgcctgtgtctagtgaaaagtaa
ccagagagaatttcagagtcacgcaaccctggtgatccggaacaaaactc
agtccaaacaagattctcaacccgtggtccatggaacacctaaggcgtta
ggtttcaacctaggagtcctcagaatagggtcgggtctaaaacctacccc
aatgctggattaaggtggagggcacggaatccacgtttcatcacacgtgc
tttgtgagatttcactgtactttgaaactcactagacctggcccgagttt
tgacgttgaaatggcgcctatttttctttatggagtcctcccagaagctt
cccaacaatgtaaaaacatctttaaaacaaaaggcatggagcgaaacact
gctaagtttggcttcggaatgaatgcgccttgtttcaaagatccttttat
acaaaattatgcccaagcattatctcccctgtataatcccctaagcacac
cagcatgggtacatggcggattatgtgtatactttccactgctcttgtgc
ttccagtcattctgagcgagacatccactctcctgtacatttttcttctc
ctttcctccagcctcagtcttcagagctttttgtttgtttgttttgtttt
gttttgggggcggggggtttgg
gaattcactgcattaacaaatgagggaacaatctaatcatcgaaaagtaa
acaggaagggctgcccttttgtccagaattgtgaaactgtgccttccagg
gacgtgggagtgctgtcttgggcagcctcccagcttcctaactttagcta
acactacatttagcttcagtcacatgtatctaccaaccaagactaccctt
tcctcccccccaccctctcggctcaaacttacagcttaattaaatcaatg
acgcatcaatcaataagcattgatcaggtaccaagtagacatgcgtgcct
cactcctgagctgacagtgagcggctggggaggtgtttcagtgggtaaag
agcttgccatttaagcatgaggacatgagttcagatctgcagaagccatg
tgaaagccagacagagtagtgctgtaatgccagcactcctacagacagag
tgaagacaggtgagcccttggaagcttacaggctagcctggcatatgaag
gagtgatgagactgtctcaaacagggtagaaggcggggagtgacattggg
agatgtcttctgacctctgcaggtgccctgaagcacgagcacatcctctt
atgtacccaaacactcatgccccccatgtgtatatacacagacgtgcctg
tgcgtgcacacacacacacacagagtcacacacacagagtcacacacaca
gagtcacacacacacacacacacacacacagagtcacacacacagagtca
cacacacagagtcacacacacacacacacacacacagagtcacacacaca
gagtcacacaacacagagtcaacacacacacagagtctcacacacacaca
cacacacacacacacacacacacagagtcacacacacagagtcacacgca
cacagagtcacacacacacagagtcacacacacacacacagagtcacaca
cacagagtcacacacacagaatcacactcacacacacacacacacataca
caggagtcacacacacagagtcacacacacagcacacacacatacaccca
cgcggagtcacacacactcacacacacgcaacgcagcacacacaccatcc
aatacgacggagttcacacacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105063137_105064183
seq2: B6Ng01-310F19.b_48_769 (reverse)

seq1  CCAAACATTCTGTAAGGGTACCCGGGGGATGCTGGAATTCTTTGTGGATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTAAAAAGCTCACCAGATTTTTCTGTGTAGTTTGGAAGTTACCAAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTGGAGTAAGCACACACATCACAATGCACTAAAAAAAAAAAGCTCTGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACCAAACCAAACCAAACCAAACCAAACCAAACCCCCGCCCCCAAAACAAA  350
                           ||||||    |||||||||||||||||||
seq2  ---------------------CCAAAC----CCCCCGCCCCCAAAACAAA  25

seq1  ACAAAACAAACAAACAAAAAGCTCTGAAGACTGAGGCTGGAGGAAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAACAAACAAAAAGCTCTGAAGACTGAGGCTGGAGGAAAGGAG  75

seq1  AAGAAAAATGTACAGGAGAGTGGATGTCTCGCTCAGAATGACTGGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGTACAGGAGAGTGGATGTCTCGCTCAGAATGACTGGAAGCA  125

seq1  CAAGAGCAGTGGAAAGTATACACATAATCCGCCATGTACCCATGCTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAGTGGAAAGTATACACATAATCCGCCATGTACCCATGCTGGTG  175

seq1  TGCTTAGGGGATTATACAGGGGAGATAATGCTTGGGCATAATTTTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGGGATTATACAGGGGAGATAATGCTTGGGCATAATTTTGTATA  225

seq1  AAAGGATCTTTGAAACAAGGCGCATTCATTCCGAAGCCAAACTTAGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTTTGAAACAAGGCGCATTCATTCCGAAGCCAAACTTAGCAGT  275

seq1  GTTTCGCTCCATGCCTTTTGTTTTAAAGATGTTTTTACATTGTTGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGCTCCATGCCTTTTGTTTTAAAGATGTTTTTACATTGTTGGGAAG  325

seq1  CTTCTGGGAGGACTCCATAAAGAAAAATAGGCGCCATTTCAACGTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGAGGACTCCATAAAGAAAAATAGGCGCCATTTCAACGTCAAAA  375

seq1  CTCGGGCCAGGTCTAGTGAGTTTCAAAGTACAGTGAAATCTCACAAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCCAGGTCTAGTGAGTTTCAAAGTACAGTGAAATCTCACAAAGCA  425

seq1  CGTGTGATGAAACGTGGATTCCGTGCCCTCCACCTTAATCCAGCATTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGATGAAACGTGGATTCCGTGCCCTCCACCTTAATCCAGCATTGGG  475

seq1  GTAGGTTTTAGACCCGACCCTATTCTGAGGACTCCTAGGTTGAAACCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTAGACCCGACCCTATTCTGAGGACTCCTAGGTTGAAACCTAA  525

seq1  CGCCTTAGGTGTTCCATGGACCACGGGTTGAGAATCTTGTTTGGACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTAGGTGTTCCATGGACCACGGGTTGAGAATCTTGTTTGGACTGAG  575

seq1  TTTTGTTCCGGATCACCAGGGTTGCGTGACTCTGAAATTCTCTCTGGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCGGATCACCAGGGTTGCGTGACTCTGAAATTCTCTCTGGTTA  625

seq1  CTTTTCACTAGACACAGGCATAGAGGCCAAGAACAGCTTTTATTCAGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACTAGACACAGGCATAGAGGCCAAGAACAGCTTTTATTCAGAGG  675

seq1  TCAGAGCATCAAGTCCAGAAGATACCTGGAGACCCTCGGGTGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCATCAAGTCCAGAAGATACCTGGAGACCCTCGGGTGAATTC  722

seq1: chr2_104898943_104900024
seq2: B6Ng01-310F19.g_70_1191

seq1  GAATTCACTGCATTAACAAATGAGGGAACAATCTAATCATCGAAAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCATTAACAAATGAGGGAACAATCTAATCATCGAAAAGTAA  50

seq1  ACAGGAAGGGCTGCCCTTTTGTCCAGAATTGTGAAACTGTGCCTTCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGGCTGCCCTTTTGTCCAGAATTGTGAAACTGTGCCTTCCAGG  100

seq1  GACGTGGGAGTGCTGTCTTGGGCAGCCTCCCAGCTTCCTAACTTTAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGGAGTGCTGTCTTGGGCAGCCTCCCAGCTTCCTAACTTTAGCTA  150

seq1  ACACTACATTTAGCTTCAGTCACATGTATCTACCAACCAAGACTACCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATTTAGCTTCAGTCACATGTATCTACCAACCAAGACTACCCTT  200

seq1  TCCTCCCCCCCACCCTCTCGGCTCAAACTTACAGCTTAATTAAATCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCCCACCCTCTCGGCTCAAACTTACAGCTTAATTAAATCAATG  250

seq1  ACGCATCAATCAATAAGCATTGATCAGGTACCAAGTAGACATGCGTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATCAATCAATAAGCATTGATCAGGTACCAAGTAGACATGCGTGCCT  300

seq1  CACTCCTGAGCTGACAGTGAGCGGCTGGGGAGGTGTTTCAGTGGGTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGAGCTGACAGTGAGCGGCTGGGGAGGTGTTTCAGTGGGTAAAG  350

seq1  AGCTTGCCATTTAAGCATGAGGACATGAGTTCAGATCTGCAGAAGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCATTTAAGCATGAGGACATGAGTTCAGATCTGCAGAAGCCATG  400

seq1  TGAAAGCCAGACAGAGTAGTGCTGTAATGCCAGCACTCCTACAGACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCAGACAGAGTAGTGCTGTAATGCCAGCACTCCTACAGACAGAG  450

seq1  TGAAGACAGGTGAGCCCTTGGAAGCTTACAGGCTAGCCTGGCATATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGGTGAGCCCTTGGAAGCTTACAGGCTAGCCTGGCATATGAAG  500

seq1  GAGTGATGAGACTGTCTCAAACAGGGTAGAAGGCGGGGAGTGACATTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGAGACTGTCTCAAACAGGGTAGAAGGCGGGGAGTGACATTGGG  550

seq1  AGATGTCTTCTGACCTCTGCAGGTGCCCTGAAGCACGAGCACATCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTTCTGACCTCTGCAGGTGCCCTGAAGCACGAGCACATCCTCTT  600

seq1  ATGTACCCAAACACTCATGCCCCCCATGTGTATATACACAGACGTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCCAAACACTCATGCCCCCCATGTGTATATACACAGACGTGCCTG  650

seq1  TGCGTGCACACACACACACACAGAGTCACACACACAGAGTCACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCACACACACACACACAGAGTCACACACACAGAGTCACACACACA  700

seq1  GAGTCACACACACACACACACACACACACAGAGTCACACACACAGAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACACACACACACACACACACACACAGAGTCACACACACAGAGTCA  750

seq1  CACACACAGAGTCACACACACACACACACACACACAGAGTCACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAGTCACACACACACACACACACACACAGAGTCACACACACA  800

seq1  GAGTCACAC-ACACAGAGTC-ACACACACACAGAGTCTCACACACACACA  848
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GAGTCACACAACACAGAGTCAACACACACACAGAGTCTCACACACACACA  850

seq1  CACACACACACACACACACACACAGAGTCACACACACAGAGTCACACGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAGAGTCACACACACAGAGTCACACGCA  900

seq1  CACAGAGTCACACACACACAGAGTCACACACACACACACAGAGTCACACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCACACACACACAGAGTCACACACACACACACAGAGTCACACA  950

seq1  CACAGAGTCACACACACAGAATCACACACACACACACACACACACATACA  998
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACAGAGTCACACACACAGAATCACACTCACACACACACACACACATACA  1000

seq1  CA-GAGTCACACACACAGAGTCACACACACA-CACACACACACACACACA  1046
      || |||||||||||||||||||||||||||| |||||||||| |||| ||
seq2  CAGGAGTCACACACACAGAGTCACACACACAGCACACACACATACACCCA  1050

seq1  CACAGAGTCACACACACACACACACACACA------CACACA--------  1082
      | | ||||||||||||| ||||||||| ||      ||||||        
seq2  CGCGGAGTCACACACACTCACACACACGCAACGCAGCACACACACCATCC  1100

seq1  ----------------------  1082
                            
seq2  AATACGACGGAGTTCACACACA  1122