BAC Information

Click to search

BAC

Clone NameB6Ng01-310H05
Chromosome2 (Build37)
Map Location 143,276,547 - 143,277,753
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H05.bB6Ng01-310H05.g
ACCGA102423GA102424
length1,1931,183
definitionB6Ng01-310H05.b B6Ng01-310H05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaaaatggcaaaaataaatctaccatatgagccagctataaca
ctccttgacatatacccgaaggactcaacatcttactttatagatacttg
cttagtcatgtttattgcagttctaatcataatagctaggaaaaagaaat
aacctaaatgtcctccaactgatgaatagataatataaatgtgttccata
cacacatagagtacatagagtgccaatcatctgtaaagttaaaggaaatc
atgaactgtgcagatctgtggctagaactagaaaaggtcatcttttccag
acccagaaaggtcatcttttccagacccagaaagacaaatgtcacatgtt
ctttttcactggaggctctaggtccaaatcttcagatatgagtaaatatc
atagtgtaactacagaaaccatgaaagtaaaaagggaccattgccaggta
tatatggtctagaaatggaaaaatggagagctttcattaggaagggagat
aaatacagaaggagagagaagggtaaaataaaattaaggatgtttaaaaa
attataagggagcatactattaactacctaaaacaacataaaatgcatat
aagtcaggttatacatatactcatttagtttaaataaaaatttcccattt
gggctgacaatactttccccaagagctaaaaaccatttaacaaaagcacc
aacgccaggctgagaagccctcttttgactatagtctattgctattgccc
ttgtttacccatcagaggtggaaagtaagttcctatttttgccaacaccg
tgtactttagatgcagggtccgaaggagcctgagctagaactgatttgaa
agccctctccccaaagcttataagaaagtgtcatttaagcttacaaagaa
gggaagcaaccaccagttctacccagctataaagcttatgaaccatgaca
tgagttatggcacaataaccctagaatgaagtagagtacacacaccttag
tgtcactagcagctctctaatgtatctagactgctcacagagggaaatca
tgcttgtactgaacctagtcactaccagactactgagtcatagagctgga
tagagtctacagcacaatttactgcccaggccaatcctaggctcatcgaa
aaactgaacttgttatcccagaattaattgcagtccctcaatc
gaattcctgtagatcatcttcagctccagtactctatgtgagccagatcc
caggagcctgagatgctctgtgctttctctagcatttctggcagaattcc
tgggagatgatcaatttagaagagcagcttctcccagctgccccaccccc
tgtatccaactcagggctaaccaggacatggctggaatgactgtatttat
acatctgtaactcccatcaacacaggagataaacaaaccttattatgggt
tgatgggctgttgtgtttctctcaggtaagccaatggcaatataaaatta
tgcttttgtttgaagttaatttctagttggctgaatttatgctgcctttg
aaacctcctggtgctttgaatacagccagcctgcctcttcaacctttgtt
ttcctctagccctgagaagggatacctagactgtggatttaaaactatgc
agcagaagcttgtgtgtgcctcactgataatgttcttactaatccacctc
tggctgatctctccaggcagatgctgccagatatagcctcgagcctgaag
catcttgtagacatagagtccaaagcaaagacagggagactcaaagcaca
gtcttgtcccagacttcaccccagcttgaagcagtttccagcacactgtt
tcccttgacagttcagtgaagtgtgtgggaggctgtatggggaacactgt
gtgttcctagtttgaaagaaaaagtagagcaagtttctgtgttgttctgc
agtgctttaagagctaacctgctgtgaagtgagaggggaatacatggcat
ggagtcttcacgactggaatattccttgaagcaaatgctgacttgaagcg
gtatctggactgggaactcctaaccctgacatctcatcactaacactgta
tcacctatctctacctacactgtaggtctgaggttctcagaagtgtgcac
tagaggtaaatcccttgttatgatcagcagcattaacaaggatcagagaa
agaaactcagagccctaggtcatgccctactggtgtatcagagctgtcag
tactgagatctagcacctgacaaaatagtttggccttgcaaatacaattc
agaaatccaagaaacttgctcttagactcatcagccgaattaactggact
atgacagtgtcaggagaaatgtgtgatatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143276547_143277753
seq2: B6Ng01-310H05.g_68_1250

seq1  GAATTCCTGTAGATCATCTTCAGCTCCAGTACTCTATGTGAGCCAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAGATCATCTTCAGCTCCAGTACTCTATGTGAGCCAGATCC  50

seq1  CAGGAGCCTGAGATGCTCTGTGCTTTCTCTAGCATTTCTGGCAGAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCTGAGATGCTCTGTGCTTTCTCTAGCATTTCTGGCAGAATTCC  100

seq1  TGGGAGATGATCAATTTAGAAGAGCAGCTTCTCCCAGCTGCCCCACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGATCAATTTAGAAGAGCAGCTTCTCCCAGCTGCCCCACCCCC  150

seq1  TGTATCCAACTCAGGGCTAACCAGGACATGGCTGGAATGACTGTATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCAACTCAGGGCTAACCAGGACATGGCTGGAATGACTGTATTTAT  200

seq1  ACATCTGTAACTCCCATCAACACAGGAGATAAACAAACCTTATTATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTAACTCCCATCAACACAGGAGATAAACAAACCTTATTATGGGT  250

seq1  TGATGGGCTGTTGTGTTTCTCTCAGGTAAGCCAATGGCAATATAAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCTGTTGTGTTTCTCTCAGGTAAGCCAATGGCAATATAAAATTA  300

seq1  TGCTTTTGTTTGAAGTTAATTTCTAGTTGGCTGAATTTATGCTGCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTTTGAAGTTAATTTCTAGTTGGCTGAATTTATGCTGCCTTTG  350

seq1  AAACCTCCTGGTGCTTTGAATACAGCCAGCCTGCCTCTTCAACCTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCTGGTGCTTTGAATACAGCCAGCCTGCCTCTTCAACCTTTGTT  400

seq1  TTCCTCTAGCCCTGAGAAGGGATACCTAGACTGTGGATTTAAAACTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTAGCCCTGAGAAGGGATACCTAGACTGTGGATTTAAAACTATGC  450

seq1  AGCAGAAGCTTGTGTGTGCCTCACTGATAATGTTCTTACTAATCCACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGCTTGTGTGTGCCTCACTGATAATGTTCTTACTAATCCACCTC  500

seq1  TGGCTGATCTCTCCAGGCAGATGCTGCCAGATATAGCCTCGAGCCTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATCTCTCCAGGCAGATGCTGCCAGATATAGCCTCGAGCCTGAAG  550

seq1  CATCTTGTAGACATAGAGTCCAAAGCAAAGACAGGGAGACTCAAAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTAGACATAGAGTCCAAAGCAAAGACAGGGAGACTCAAAGCACA  600

seq1  GTCTTGTCCCAGACTTCACCCCAGCTTGAAGCAGTTTCCAGCACACTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCCCAGACTTCACCCCAGCTTGAAGCAGTTTCCAGCACACTGTT  650

seq1  TCCCTTGACAGTTCAGTGAAGTGTGTGGGAGGCTGTATGGGGAACACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGACAGTTCAGTGAAGTGTGTGGGAGGCTGTATGGGGAACACTGT  700

seq1  GTGTTCCTAGTTTGAAAGAAAAAGTAGAGCAAGTTTCTGTGTTGTTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTAGTTTGAAAGAAAAAGTAGAGCAAGTTTCTGTGTTGTTCTGC  750

seq1  AGTGCTTTAAGAGCTAACCTGCTGTGAAGTGAGAGGGGAATACATGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTAAGAGCTAACCTGCTGTGAAGTGAGAGGGGAATACATGGCAT  800

seq1  GGAGTCTTCACGACTGGAATATTCCTTGAAGCAAATGCTGACTTGAAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTTCACGACTGGAATATTCCTTGAAGCAAATGCTGACTTGAAGCG  850

seq1  GTATCTGGACTGGGAACTCCTAACCCTGACATCTCATCACTAACACTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGACTGGGAACTCCTAACCCTGACATCTCATCACTAACACTGTA  900

seq1  TCACCTATCTCTACCTACACTGTAGGTCTGAGGTTCTCAGAAGTGTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATCTCTACCTACACTGTAGGTCTGAGGTTCTCAGAAGTGTGCAC  950

seq1  TAGAGGTAAAT-CCTTGTTATGATCAGCAGCATTAACAAGGAATCAGAGA  999
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TAGAGGTAAATCCCTTGTTATGATCAGCAGCATTAACAAGG-ATCAGAGA  999

seq1  AAGAAACTCCAGAGCCCTAAGGTCCATGCCCCTACTTGGTTGTATCAGAG  1049
      |||||||| ||||||||| |||| |||| |||||||  | ||||||||||
seq2  AAGAAACT-CAGAGCCCT-AGGT-CATG-CCCTACT--GGTGTATCAGAG  1043

seq1  CTGTCCAAGGTACTGAAGATCTAGCA-CTGACAAAATAGTTT-GCCCTGC  1097
      |||||    |||||| |||||||||| ||||||||||||||| ||| |||
seq2  CTGTC---AGTACTG-AGATCTAGCACCTGACAAAATAGTTTGGCCTTGC  1089

seq1  AAATTACCAAATTTCAGAAAATCAAAGGAAAACCTGCTCTTAGGACTTCT  1147
      ||||    | | ||||| ||||| |||  |||| |||||||| ||||   
seq2  AAAT----ACAATTCAG-AAATCCAAG--AAACTTGCTCTTA-GACT--C  1129

seq1  ATCAGGCCAGAAATTTTAAACTGGACTAAATGACCATGTCAGGAGAAATG  1197
      |||||  | |||    | |||||||||  |||||  ||||||||||||||
seq2  ATCAG--CCGAA----TTAACTGGACT--ATGACAGTGTCAGGAGAAATG  1171

seq1  T-TGAT-TGTGT  1207
      | |||| |||||
seq2  TGTGATATGTGT  1183