BAC Information

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BAC

Clone NameB6Ng01-310P19
Chromosome2 (Build37)
Map Location 20,379,208 - 20,536,755
singlet/doubletdoublet
Overlap geneEtl4
Upstream gene4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310P19.bB6Ng01-310P19.g
ACCGA102817GA102818
length617936
definitionB6Ng01-310P19.b B6Ng01-310P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,379,208 - 20,379,824)(20,535,814 - 20,536,755)
sequence
gaattcttgctctgatcttaggcttctctctctctctctctctctctctc
tctctctctctctctctctccattctcaatccctcccgctccctctcagt
ctctctccatttttccttctttattctctttttattgtttgcttgtcttt
tatttttttttaaaagaaaaggtcttctatagcccaggctggtcccaaat
tcactatctgattgagaatgcctttgaaatcccaatcctccagccttagc
ccccagccccaaaactgggatgacaggtgtgcaaagccatgtcttgtatt
ctttttgctttcttaaaaaatgacttttggggctggtgagatggctcagt
gggtaagagcacccgactgctcttccgaaggtcaggagttcaaatcccag
caaccacatggtggctcacaaccatctgatcacgagatatgacgccctct
tctggcgtgtctgaagacagctacagtgtacttacatataataaataaat
aaataaatcttttttaaaaatgatttttgagaggcccattggacacacaa
actttatatgccccagtacaggggaatgccagggccaaaaaaatgggaat
gggtggggagggaagtg
gaattcattctctttgtctaggaacatgcatggagaatgataggaacagg
gaaggcctagagcttttcaatctatactctaaaaactagagatcatatcg
tatactagagtccaccagggcatccacatactaattgcacagtgatcata
catgcatgttttaaaacgtaattcacagttcaaaatgcaataattcttat
ttcttcattgaaaccactcaatccatcttccatgacaacgcttcattctc
atcttctctcttcctcattaatctctcccctgaggttcctttcttcaaca
ggagatattatgactttagctacatctaattttaatataacaataaaact
aaacgttgcttagaagctcttatcacaaagcatggatttaaaaagttttt
ggtagaaagcatttatttttaacttccactcttcctagaaaaagccatta
aagttagggtccccagcatggcgacaagtgagcgagccacttaacaaata
aatctgactcagagacagtaatgtagaacactgcctctaaggcggggcct
gacagttctttcacgacataaacaaggccctacaactcatctccagatgc
caccatgctatctctaactgatgcctgttcgcaaaagaagctgctcttgt
gcctctcttcctttctttcgctttcctttgtattctgggttgtttgtttt
atttgtttatttgttttccaaagaggggaagaaaaaagaaggcgtggagt
tagatgggtcgggaaggaggagctgggaagagatggggggaggagaagcc
gtgatgagaatagaattctatgaaatcttatttttcataaaaaagtggtt
agataaataaagtgtttacagaagagcaaacctagctcttaacacacatt
tttgaggcagacattcattaaatgagcctcaaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20379208_20379824
seq2: B6Ng01-310P19.b_43_659

seq1  GAATTCTTGCTCTGATCTTAGGCTTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTCTGATCTTAGGCTTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTCCATTCTCAATCCCTCCCGCTCCCTCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCCATTCTCAATCCCTCCCGCTCCCTCTCAGT  100

seq1  CTCTCTCCATTTTTCCTTCTTTATTCTCTTTTTATTGTTTGCTTGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCATTTTTCCTTCTTTATTCTCTTTTTATTGTTTGCTTGTCTTT  150

seq1  TATTTTTTTTTAAAAGAAAAGGTCTTCTATAGCCCAGGCTGGTCCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTAAAAGAAAAGGTCTTCTATAGCCCAGGCTGGTCCCAAAT  200

seq1  TCACTATCTGATTGAGAATGCCTTTGAAATCCCAATCCTCCAGCCTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCTGATTGAGAATGCCTTTGAAATCCCAATCCTCCAGCCTTAGC  250

seq1  CCCCAGCCCCAAAACTGGGATGACAGGTGTGCAAAGCCATGTCTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCCAAAACTGGGATGACAGGTGTGCAAAGCCATGTCTTGTATT  300

seq1  CTTTTTGCTTTCTTAAAAAATGACTTTTGGGGCTGGTGAGATGGCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTTTCTTAAAAAATGACTTTTGGGGCTGGTGAGATGGCTCAGT  350

seq1  GGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAG  400

seq1  CAACCACATGGTGGCTCACAACCATCTGATCACGAGATATGACGCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGGCTCACAACCATCTGATCACGAGATATGACGCCCTCT  450

seq1  TCTGGCGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAAT  500

seq1  AAATAAATCTTTTTTAAAAATGATTTTTGAGAGGCCCATTGGACACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTTTTTAAAAATGATTTTTGAGAGGCCCATTGGACACACAA  550

seq1  ACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAAATGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAAATGGGAAT  600

seq1  GGGTGGGGAGGGAAGTG  617
      |||||||||||||||||
seq2  GGGTGGGGAGGGAAGTG  617

seq1: chr2_20535814_20536755
seq2: B6Ng01-310P19.g_66_1001 (reverse)

seq1  GGCCTTGAGGCTCATTTTAATGAAATGTCTGCCTCAAAAAATGTGTTGTT  50
      |||||||||||||| ||||||| |||||||||||| ||||||||||  | 
seq2  GGCCTTGAGGCTCA-TTTAATG-AATGTCTGCCTC-AAAAATGTGTGTTA  47

seq1  AGAGCTTGGGTTTTGCTCTTCTTGTAAACACTTTTATTTATCTTAACACT  100
      |||||| ||  |||||||||| ||||||||| ||||||||||| | ||||
seq2  AGAGCTAGG--TTTGCTCTTC-TGTAAACAC-TTTATTTATCTAACCACT  93

seq1  TTTTTATGGAAAATAAGATTTTCATAGAA-TCTATTCTCATCACGGCTTC  149
      |||||||| ||||||||| |||||||||| ||||||||||||||||||||
seq2  TTTTTATGAAAAATAAGA-TTTCATAGAATTCTATTCTCATCACGGCTTC  142

seq1  TCCT-CCCCCATCTCTTCCCAGCTCCTCCTTCCCGACCCATCTAACTCCA  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCCATCTCTTCCCAGCTCCTCCTTCCCGACCCATCTAACTCCA  192

seq1  CGCCTTCTTTTTTCTTCCCCTCTTTGGAAAACAAATAAACAAATAAAACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCTTTTTTCTTCCCCTCTTTGGAAAACAAATAAACAAATAAAACA  242

seq1  AACAACCCAGAATACAAAGGAAAGCGAAAGAAAGGAAGAGAGGCACAAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCCAGAATACAAAGGAAAGCGAAAGAAAGGAAGAGAGGCACAAGA  292

seq1  GCAGCTTCTTTTGCGAACAGGCATCAGTTAGAGATAGCATGGTGGCATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCTTTTGCGAACAGGCATCAGTTAGAGATAGCATGGTGGCATCT  342

seq1  GGAGATGAGTTGTAGGGCCTTGTTTATGTCGTGAAAGAACTGTCAGGCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAGTTGTAGGGCCTTGTTTATGTCGTGAAAGAACTGTCAGGCCC  392

seq1  CGCCTTAGAGGCAGTGTTCTACATTACTGTCTCTGAGTCAGATTTATTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTAGAGGCAGTGTTCTACATTACTGTCTCTGAGTCAGATTTATTTG  442

seq1  TTAAGTGGCTCGCTCACTTGTCGCCATGCTGGGGACCCTAACTTTAATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGCTCGCTCACTTGTCGCCATGCTGGGGACCCTAACTTTAATGG  492

seq1  CTTTTTCTAGGAAGAGTGGAAGTTAAAAATAAATGCTTTCTACCAAAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTAGGAAGAGTGGAAGTTAAAAATAAATGCTTTCTACCAAAAAC  542

seq1  TTTTTAAATCCATGCTTTGTGATAAGAGCTTCTAAGCAACGTTTAGTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCCATGCTTTGTGATAAGAGCTTCTAAGCAACGTTTAGTTTT  592

seq1  ATTGTTATATTAAAATTAGATGTAGCTAAAGTCATAATATCTCCTGTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATATTAAAATTAGATGTAGCTAAAGTCATAATATCTCCTGTTGA  642

seq1  AGAAAGGAACCTCAGGGGAGAGATTAATGAGGAAGAGAGAAGATGAGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAACCTCAGGGGAGAGATTAATGAGGAAGAGAGAAGATGAGAAT  692

seq1  GAAGCGTTGTCATGGAAGATGGATTGAGTGGTTTCAATGAAGAAATAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGTTGTCATGGAAGATGGATTGAGTGGTTTCAATGAAGAAATAAGA  742

seq1  ATTATTGCATTTTGAACTGTGAATTACGTTTTAAAACATGCATGTATGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCATTTTGAACTGTGAATTACGTTTTAAAACATGCATGTATGAT  792

seq1  CACTGTGCAATTAGTATGTGGATGCCCTGGTGGACTCTAGTATACGATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCAATTAGTATGTGGATGCCCTGGTGGACTCTAGTATACGATAT  842

seq1  GATCTCTAGTTTTTAGAGTATAGATTGAAAAGCTCTAGGCCTTCCCTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAGTTTTTAGAGTATAGATTGAAAAGCTCTAGGCCTTCCCTGTT  892

seq1  CCTATCATTCTCCATGCATGTTCCTAGACAAAGAGAATGAATTC  942
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCATTCTCCATGCATGTTCCTAGACAAAGAGAATGAATTC  936