BAC Information

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BAC

Clone NameB6Ng01-311C13
Chromosome2 (Build37)
Map Location 25,447,083 - 25,448,171
singlet/doubletsinglet
Overlap geneB230208H17Rik
Upstream geneLOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887
Downstream gene4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311C13.b
ACCGA102946
length1,091
definitionB6Ng01-311C13.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtttccacgagatggtaatgctgcagaagatgtgaagacca
tatgccaggactatggggcctgcctggctcttgtctggttcttcagacca
ctcccagaggagtatgctgtaaaacatccttaggagctggctgccagaag
gaagcttggtggcgggatgcgtaggcttaggtgtgacccttgactttgaa
gtcaagctacactgcccatcaagttcctttatctttctttgaaaacagac
ctccaggttcctcctatttccgctatgctgaatcttccatgaagaacagc
tttggtctaaagtacctgcataagttcttcaacatcccatttttgcaact
acaggtaagtgcgtactaggtagggaaaacaaaagggtaaccatcatttt
tgtgactctgcacaagaagtgccctgcttcctaagcctgataacaccctt
gggcaccttcttggaagctggctactgatgtatgtaatgagctggacatg
gcacacacagtactcatagtggcggccaagagtctggtaacatgtcctgc
tctctaagggcattggaagtcagtacagcctgtagagggagcccttgtcc
cctgtggggcaccaattgaagtgcatacctcatttcccagataaacagat
agctatggaggaagtcccagtcacaacaagtctttcaacaagaggcaggt
tccagggtatgcagtttctgtgactacattcacgtgctggctgtgctctg
ggaaccatggccctctggccagctcatgaaaaaaggaaaacctgtaccct
tgctacaagcatctagccttcctgatacagcggaggcaagtagagtggcc
ttcagggtgaagagctgcacctatcctgctttttaattagtgctcctctt
ggaaccttctagatgtatagaagtggcaaaggctgtatgtggaggcaaca
aacctgtatcccagcactcaggatgctgagtcagaagatcacttcaggtt
taagatacagaaagaaggttcaataagagggagacccacccaaaacctca
tagtggttacaatggccagtatttccagtacttggggaagt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25447083_25448171
seq2: B6Ng01-311C13.b_47_1137 (reverse)

seq1  ACTT-CCCAAGTACTGGAATTACTGGC--ATGT-ACCACTATGAGTTTTT  46
      |||| |||||||||||||| |||||||   ||| ||||||||||| ||||
seq2  ACTTCCCCAAGTACTGGAAATACTGGCCATTGTAACCACTATGAGGTTTT  50

seq1  GGGGTGGGTCTCCCTCTTATTGAACC-TCTTTCTGTATCCTTAAACCTGA  95
       ||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  -GGGTGGGTCTCCCTCTTATTGAACCTTCTTTCTGTAT-CTTAAACCTGA  98

seq1  AGTGATCTTCCTGACTCAGCCTTCTGAGTGCTGGGATTACAGGTTTG-TG  144
      ||||||||| |||||||||| | ||||||||||||| |||||||||| ||
seq2  AGTGATCTT-CTGACTCAGCATCCTGAGTGCTGGGA-TACAGGTTTGTTG  146

seq1  CCTCCACATACAGCCTTTGCCACTTCTATACATCTAGAAGGTTCCAAGAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACATACAGCCTTTGCCACTTCTATACATCTAGAAGGTTCCAAGAG  196

seq1  GAGCACTAATTAAAAAGCAGGATAGGTGCAGCTCTTCACCCTGAAGGCCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTAATTAAAAAGCAGGATAGGTGCAGCTCTTCACCCTGAAGGCCA  246

seq1  CTCTACTTGCCTCCGCTGTATCAGGAAGGCTAGATGCTTGTAGCAAGGGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTGCCTCCGCTGTATCAGGAAGGCTAGATGCTTGTAGCAAGGGT  296

seq1  ACAGGTTTTCCTTTTTTCATGAGCTGGCCAGAGGGCCATGGTTCCCAGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTCCTTTTTTCATGAGCTGGCCAGAGGGCCATGGTTCCCAGAG  346

seq1  CACAGCCAGCACGTGAATGTAGTCACAGAAACTGCATACCCTGGAACCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAGCACGTGAATGTAGTCACAGAAACTGCATACCCTGGAACCTG  396

seq1  CCTCTTGTTGAAAGACTTGTTGTGACTGGGACTTCCTCCATAGCTATCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTTGAAAGACTTGTTGTGACTGGGACTTCCTCCATAGCTATCTG  446

seq1  TTTATCTGGGAAATGAGGTATGCACTTCAATTGGTGCCCCACAGGGGACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGGGAAATGAGGTATGCACTTCAATTGGTGCCCCACAGGGGACA  496

seq1  AGGGCTCCCTCTACAGGCTGTACTGACTTCCAATGCCCTTAGAGAGCAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCCTCTACAGGCTGTACTGACTTCCAATGCCCTTAGAGAGCAGG  546

seq1  ACATGTTACCAGACTCTTGGCCGCCACTATGAGTACTGTGTGTGCCATGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTACCAGACTCTTGGCCGCCACTATGAGTACTGTGTGTGCCATGT  596

seq1  CCAGCTCATTACATACATCAGTAGCCAGCTTCCAAGAAGGTGCCCAAGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCATTACATACATCAGTAGCCAGCTTCCAAGAAGGTGCCCAAGGG  646

seq1  TGTTATCAGGCTTAGGAAGCAGGGCACTTCTTGTGCAGAGTCACAAAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAGGCTTAGGAAGCAGGGCACTTCTTGTGCAGAGTCACAAAAAT  696

seq1  GATGGTTACCCTTTTGTTTTCCCTACCTAGTACGCACTTACCTGTAGTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTACCCTTTTGTTTTCCCTACCTAGTACGCACTTACCTGTAGTTG  746

seq1  CAAAAATGGGATGTTGAAGAACTTATGCAGGTACTTTAGACCAAAGCTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGGATGTTGAAGAACTTATGCAGGTACTTTAGACCAAAGCTGT  796

seq1  TCTTCATGGAAGATTCAGCATAGCGGAAATAGGAGGAACCTGGAGGTCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGAAGATTCAGCATAGCGGAAATAGGAGGAACCTGGAGGTCTG  846

seq1  TTTTCAAAGAAAGATAAAGGAACTTGATGGGCAGTGTAGCTTGACTTCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGAAAGATAAAGGAACTTGATGGGCAGTGTAGCTTGACTTCAA  896

seq1  AGTCAAGGGTCACACCTAAGCCTACGCATCCCGCCACCAAGCTTCCTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGGTCACACCTAAGCCTACGCATCCCGCCACCAAGCTTCCTTCT  946

seq1  GGCAGCCAGCTCCTAAGGATGTTTTACAGCATACTCCTCTGGGAGTGGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGCTCCTAAGGATGTTTTACAGCATACTCCTCTGGGAGTGGTC  996

seq1  TGAAGAACCAGACAAGAGCCAGGCAGGCCCCATAGTCCTGGCATATGGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACCAGACAAGAGCCAGGCAGGCCCCATAGTCCTGGCATATGGTC  1046

seq1  TTCACATCTTCTGCAGCATTACCATCTCGTGGAAACCTGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTTCTGCAGCATTACCATCTCGTGGAAACCTGGAATTC  1091