BAC Information

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BAC

Clone NameB6Ng01-311O20
Chromosome2 (Build37)
Map Location 22,872,132 - 22,873,288
singlet/doubletsinglet
Overlap geneAbi1
Upstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, 1200016E24Rik
Downstream geneAcbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O20.bB6Ng01-311O20.g
ACCGA103523GA103524
length1,2051,159
definitionB6Ng01-311O20.b B6Ng01-311O20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacaccagtctcacccagcttgccagctgagcattcagcagtca
cttgttcttatcatttggattggatatgagcatctgtacttactgagtgc
actacaaaagtacactgctctagccagaaccaacagcaacagtgatctgt
ggctataaacataattattttgaaggtaatttgatgagtacatcatatcc
atttgtcaaaataagaacagtagggacctccccctcctgagcacctaata
catccccagccatgaacttttgactgagtttagagtttcaggcgattcgt
tccctcagagcaggacttaaatccactgagagcctagtggtaagtcacct
gcataacacacttagcactactgcaccaatgggcatgtctgcctctagtc
tagcagcagtaagcatctgcaacttgataaaactgttactgaccatcccc
aagccctccctggcagtccttagcaccctctggtactatgatgactagcc
agcaatgaggaaactcctagctcttttacatggtagcgtctctatatctt
acaatgagagagtgtgggttgtgagattgtaagccatacaatatcatttt
ggtgaatagacaacagcagtggcaattgcttgtactgaaatagctgataa
ttagtgagcaaatgtttcttgaaaaactgatagcattctgggttatttca
ctgtattcaacctttctacaaggctgttcaagaaaacttttttttttcca
gtccagagacttaaaccctgggccttatgcatactgtgctaggcaagaca
ttccaccattgagctgtatctctaactctcaaaaatttaatgatttcaat
tagttaattaattataaatgttgcctctgcatatatgtatcctataccag
ccagttctgtgggtacagtttctaacataaaaagacaaagttcagaacaa
tgtgattattttatatatcaatgataaaacaaaggttttaaatatactca
catattttcctttgcatgtatagacatcatatgatggatattctcacaac
accatcatgtctaaacctagcagatttattccagactcaggacaggttct
tatctctttcatcagttcttggattgtaaagtacctctcataggacctca
taggcctacctttacattgatcaatcacttcacaatttcataggctcgcg
gctct
gaattcattgctcagaaccagaaaggagatgatcctgtaagtcgggggaa
atgaggcagcggattctgaagcttaaaaacagcatcctgcgataataaag
atcaggcatgacaaggctttagagaagaatctctgctagaacctgagaga
tcccaatattcccctggggagcgagctctgagtcagctagaccaccgcag
atggtttctcacagtcagctagagttagcaaatctcttcaggggaatatt
ctaaagtctctccatcagatttattgataactctaggatagaacactctg
gccttgtccaagaaaatatttttggacattagaaaagccatccaacaggt
agctcacggatactaagttgccaaaagatcaatccctcaagcagaggcct
ccagcagctcctccaactaaaaatgtggaacgtatctaggaaaggacttt
agtacaggtagatatttttatgaaatggacagaggttttaccatccaaga
gaaaacctctcctatgtagtcaacttaagagtctacttgtaaaaacttgt
aatctacttaaagaaatagtccctagattcaaaatccttaaaactcccca
cagcggctacagtcccacctttaagactgagataatccagtgtttgtcca
aggcaccagggagtcactgcaattttatcgtgtttggcaccctcaatcct
gagaaatgtggaaaagactgatgagagctaaagaagctccttcaggagac
atagtccccttggcctaaactgctccctcccggacatagaagcacttgaa
taccagggcttaacttcctttgaggttctgtatggcaggccctttcttac
caatgacccagcattagactcaaaagcagtgagactgtaaatcatgtcac
cccaacagtccaagttcaatagttattgtcaaaattcattgcaaggcttc
ctccgagaagaatggaagaaacccctcaaaaaacaatgtaaatttagact
tgtgatcaaataaagtcctgttcacactgtaaacagtcacatccccagtt
tttttatccacacttgtgcagtagaagttgcaggatggattacattgatt
cattcatatattatcttgagccattactctcagaaatcctcctaatcccc
ttcaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_22872132_22873288
seq2: B6Ng01-311O20.g_68_1226

seq1  GAATTCATTGCTCAGAACCAGAAAGGAGATGATCCTGTAAGTCGGGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTCAGAACCAGAAAGGAGATGATCCTGTAAGTCGGGGGAA  50

seq1  ATGAGGCAGCGGATTCTGAAGCTTAAAAACAGCATCCTGCGATAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCAGCGGATTCTGAAGCTTAAAAACAGCATCCTGCGATAATAAAG  100

seq1  ATCAGGCATGACAAGGCTTTAGAGAAGAATCTCTGCTAGAACCTGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCATGACAAGGCTTTAGAGAAGAATCTCTGCTAGAACCTGAGAGA  150

seq1  TCCCAATATTCCCCTGGGGAGCGAGCTCTGAGTCAGCTAGACCACCGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATATTCCCCTGGGGAGCGAGCTCTGAGTCAGCTAGACCACCGCAG  200

seq1  ATGGTTTCTCACAGTCAGCTAGAGTTAGCAAATCTCTTCAGGGGAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTCACAGTCAGCTAGAGTTAGCAAATCTCTTCAGGGGAATATT  250

seq1  CTAAAGTCTCTCCATCAGATTTATTGATAACTCTAGGATAGAACACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTCTCTCCATCAGATTTATTGATAACTCTAGGATAGAACACTCTG  300

seq1  GCCTTGTCCAAGAAAATATTTTTGGACATTAGAAAAGCCATCCAACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCCAAGAAAATATTTTTGGACATTAGAAAAGCCATCCAACAGGT  350

seq1  AGCTCACGGATACTAAGTTGCCAAAAGATCAATCCCTCAAGCAGAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACGGATACTAAGTTGCCAAAAGATCAATCCCTCAAGCAGAGGCCT  400

seq1  CCAGCAGCTCCTCCAACTAAAAATGTGGAACGTATCTAGGAAAGGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTCCTCCAACTAAAAATGTGGAACGTATCTAGGAAAGGACTTT  450

seq1  AGTACAGGTAGATATTTTTATGAAATGGACAGAGGTTTTACCATCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGTAGATATTTTTATGAAATGGACAGAGGTTTTACCATCCAAGA  500

seq1  GAAAACCTCTCCTATGTAGTCAACTTAAGAGTCTACTTGTAAAAACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTCTCCTATGTAGTCAACTTAAGAGTCTACTTGTAAAAACTTGT  550

seq1  AATCTACTTAAAGAAATAGTCCCTAGATTCAAAATCCTTAAAAATCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  AATCTACTTAAAGAAATAGTCCCTAGATTCAAAATCCTTAAAACTCCCCA  600

seq1  CAGCGGCTACAGTCCCACCTTTAAGACTGAGATAATCCAGTGTTTGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGCTACAGTCCCACCTTTAAGACTGAGATAATCCAGTGTTTGTCCA  650

seq1  AGGCACCAGGGAGTCACTGCAATTTTATCGTGTTTGGCACCCTCAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAGGGAGTCACTGCAATTTTATCGTGTTTGGCACCCTCAATCCT  700

seq1  GAGAAATGTGGAAAAGACTGATGAGAGCTAAAGAAGCTCCTTCAGGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTGGAAAAGACTGATGAGAGCTAAAGAAGCTCCTTCAGGAGAC  750

seq1  ATAGTCCCCTTGGCCTAAACTGCTCCCTCCCGGACATAGAAGCACTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCCCTTGGCCTAAACTGCTCCCTCCCGGACATAGAAGCACTTGAA  800

seq1  TACCAGGGCTTAACTTCCTTTGAGGTTCTGTATGGCAGGCCCTTTCTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGCTTAACTTCCTTTGAGGTTCTGTATGGCAGGCCCTTTCTTAC  850

seq1  CAATGACCCAGCATTAGACTCAAAAGCAGTGAGACTGTAAATCATGTCA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAATGACCCAGCATTAGACTCAAAAGCAGTGAGACTGTAAATCATGTCAC  900

seq1  CCCAACAGTCCAAGTTCAATAGTTATTGTCAAAATTCATTGCAAGGCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGTCCAAGTTCAATAGTTATTGTCAAAATTCATTGCAAGGCTTC  950

seq1  CT-CGAGAAGAATGGAAGAAA-CCCTC-AAAAACAATGTAAATTAAGACT  996
      || |||||||||||||||||| ||||| |||||||||||||||| |||||
seq2  CTCCGAGAAGAATGGAAGAAACCCCTCAAAAAACAATGTAAATTTAGACT  1000

seq1  TGTGATTCAAATAAAGTCCTGTTCAACACCTGTAAAACAGTCCACAT-CC  1045
      ||||| |||||||||||||||||| ||| |||| ||||||| ||||| ||
seq2  TGTGA-TCAAATAAAGTCCTGTTC-ACA-CTGT-AAACAGT-CACATCCC  1045

seq1  CAG-TATTTTATCCACACTTGTGGCAGTAAGAGTTGCAGGAGTGGA-TAC  1093
      ||| | |||||||||||||||| ||||||  |||||||||| |||| |||
seq2  CAGTTTTTTTATCCACACTTGT-GCAGTAGAAGTTGCAGGA-TGGATTAC  1093

seq1  ATGGATTCA-TCATAT-TTATCTTGAGCCATAAACTTCTCAG--ATACTC  1139
      || |||||| |||||| |||||||||||||| |   ||||||  || |||
seq2  ATTGATTCATTCATATATTATCTTGAGCCATTA--CTCTCAGAAATCCTC  1141

seq1  CTAAACCCTTCCAAGGAA  1157
      |||| ||| | |||||||
seq2  CTAATCCCCTTCAAGGAA  1159