BAC Information

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BAC

Clone NameB6Ng01-311P12
Chromosome2 (Build37)
Map Location 75,536,425 - 75,719,584
singlet/doubletdoublet
Overlap geneNfe2l2, E030042O20Rik, LOC623453, Agps
Upstream geneHoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3
Downstream geneTtc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311P12.bB6Ng01-311P12.g
ACCGA103555GA103556
length1,0511,118
definitionB6Ng01-311P12.b B6Ng01-311P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,536,425 - 75,537,483)(75,718,475 - 75,719,584)
sequence
gaattcagcaggtactaacccactccaaatctcaggtcttttttatttgt
tttttttttttttgagacagggtttctctgtgtagccctggctgtcctgg
aactcactctgtagaccaggctggcctcgaactcagaaatctgcctgtct
ctgcctcccaagtgctaggcgtgcaccaccacgcccggctcaggtatttt
aagaataaaaataagatactattcttcaaaatcttaaaagcaacaagaga
caagcttttactaacttcctgacaggtgattaaattataccccattaagg
agctatgggaatggctagggtaacgccaacctgctctgcctggcagccct
gagcaggagaggcaggagtgtgccaggcgatggcagaggccagctgcagt
ggtcacactcagtagccccccacacgcagtgtacccaccaacaagtcagc
ctctcgttccaactgtgtaaatcagaaaatccttctgggcaacttcagta
ctgattcctgtggtctggactacaaagttgcctctaacgggcacaaccaa
aaagcggagttggcttgcccatgccagggttttctttgcagaaaagaaac
aaaaagcacaggaatgaagtgtgtacaggaatctacatccaacacccacc
ccagcaggaacattccagtctcctccggtttgtctggagacagggttcta
tgctgcaggccaggctgttttaccactgactgcaatcctccctaggagct
ggaactgcaggagggatccaccacactcctggctctcactgcctcttaaa
attttgtgtgggtgtatagctagtgcatgaaggtgccaggggaagtcaga
gacttcaggtcctctggagctggggttataggcagttgtaagccacctga
tatagtgcgatgaactgaacttggatcttcaagaacagtaagtacgcttt
aaaatgtagccatcttttctagcccccaccttcacagtctttttaacatg
tcattctaatatctattgtaggtatcacaccccttgaaaagtcatgaaag
t
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggggacagc
agatgctggcgaggatgtggagaaagaggaacactcctccactgttggtg
ggattgcaggcttgtacaaccactccggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccagtaagaaggacatatgctccactat
gttcaaatatactttttttaaagtacatatcaaaactaattttttcagct
tatttgaactcctgcagaatttacagagctcacaaactatttctttcctg
atgtgatctacattaacataaggaaatatctgttaattttaaattactta
aaatgatgaaaacagaggcagaggcaggcggatttctgagttcgaggcca
gcctggtctacaaagtgagttccaggatagccagagctatacagagaaac
cctgtctcaaaaaacctttaagaaataaaaaagaaaaaaaaaaaaaaaaa
atttgatgaaaacaaaggtgagagagtcagaaaagagcaccccttatgac
tggtgaaggagaggctgtcatctaaatacacccaaggggccagttttcaa
gggaactgactcatttatactagtcagtttttcttcgaatggcaagagat
acccctctttccaccatggaagacagaatcataaattcttttctttttct
atgagtacaccgctgctgtcgtcagacacaccagaggagatccccttacc
aattgttctgaggctgccctggtgtttgctggtgaattgaactcttctac
cacaccagtttgaatttttgaaagcagcttaagtgaaaaatattgtaaaa
tggaaggtggtgaaatttacaaacattgtttttccatcaggacctggcac
aaccataaaacatacacctatcttacttagtcaatcttaagttccatgct
atcaactggactccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75536425_75537483
seq2: B6Ng01-311P12.b_49_1099

seq1  GAATTCAGCAGGTACTAACCCACTCCAAATCTCAGGTCTTTTTTATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGTACTAACCCACTCCAAATCTCAGGTCTTTTTTATTTGT  50

seq1  TTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  100

seq1  AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCT  150

seq1  CTGCCTCCCAAGTGCTAGGCGTGCACCACCACGCCCGGCTCAGGTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAAGTGCTAGGCGTGCACCACCACGCCCGGCTCAGGTATTTT  200

seq1  AAGAATAAAAATAAGATACTATTCTTCAAAATCTTAAAAGCAACAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAAATAAGATACTATTCTTCAAAATCTTAAAAGCAACAAGAGA  250

seq1  CAAGCTTTTACTAACTTCCTGACAGGTGATTAAATTATACCCCATTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTTACTAACTTCCTGACAGGTGATTAAATTATACCCCATTAAGG  300

seq1  AGCTATGGGAATGGCTAGGGTAACGCCAACCTGCTCTGCCTGGCAGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGGAATGGCTAGGGTAACGCCAACCTGCTCTGCCTGGCAGCCCT  350

seq1  GAGCAGGAGAGGCAGGAGTGTGCCAGGCGATGGCAGAGGCCAGCTGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAGAGGCAGGAGTGTGCCAGGCGATGGCAGAGGCCAGCTGCAGT  400

seq1  GGTCACACTCAGTAGCCCCCCACACGCAGTGTACCCACCAACAAGTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACTCAGTAGCCCCCCACACGCAGTGTACCCACCAACAAGTCAGC  450

seq1  CTCTCGTTCCAACTGTGTAAATCAGAAAATCCTTCTGGGCAACTTCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTTCCAACTGTGTAAATCAGAAAATCCTTCTGGGCAACTTCAGTA  500

seq1  CTGATTCCTGTGGTCTGGACTACAAAGTTGCCTCTAACGGGCACAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCTGTGGTCTGGACTACAAAGTTGCCTCTAACGGGCACAACCAA  550

seq1  AAAGCGGAGTTGGCTTGCCCATGCCAGGGTTTTCTTTGCAGAAAAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGAGTTGGCTTGCCCATGCCAGGGTTTTCTTTGCAGAAAAGAAAC  600

seq1  AAAAAGCACAGGAATGAAGTGTGTACAGGAATCTACATCCAACACCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACAGGAATGAAGTGTGTACAGGAATCTACATCCAACACCCACC  650

seq1  CCAGCAGGAACATTCCAGTCTCCTCCGGTTTGTCTGGAGACAGGGTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGAACATTCCAGTCTCCTCCGGTTTGTCTGGAGACAGGGTTCTA  700

seq1  TGCTGCAGGCCAGGCTGTTTTACCACTGACTGCAATCCTCCCTAGGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGGCCAGGCTGTTTTACCACTGACTGCAATCCTCCCTAGGAGCT  750

seq1  GGAACTGCAGGAGGGATCCACCACACTCCTGGCTCTCACTGCCTCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAGGAGGGATCCACCACACTCCTGGCTCTCACTGCCTCTTAAA  800

seq1  ATTTTGTGTGGGTGTATAGCTAGTGCATGAAGGTGCCAGGGGAAGTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTGGGTGTATAGCTAGTGCATGAAGGTGCCAGGGGAAGTCAGA  850

seq1  GACTTCAGGTCCTCTGGAGCTGGGGTTATAGGCAGTTGTAAGCCACCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGTCCTCTGGAGCTGGGGTTATAGGCAGTTGTAAGCCACCTGA  900

seq1  TATAGGTGCGATGAACTGAACTTGGATCTTCAAGAACAGTAAGTACGCTT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATA-GTGCGATGAACTGAACTTGGATCTTCAAGAACAGTAAGTACGCTT  949

seq1  AAAAATGTAGCCATC-TTTCTAGCCCCCA-CTTCACAGTCTTTTTAACAT  998
       |||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TAAAATGTAGCCATCTTTTCTAGCCCCCACCTTCACAGTCTTTTTAACAT  999

seq1  GTCATTTCTAAATAATCTTATTGTAAGTTATTCACACCCCTGAAAAAAGT  1048
      |||| ||||||   ||| ||||||| ||   ||||||||||   ||||||
seq2  GTCA-TTCTAA--TATC-TATTGTAGGT--ATCACACCCCT-TGAAAAGT  1042

seq1  CATGGAAAAGT  1059
      ||||  |||||
seq2  CATG--AAAGT  1051

seq1: chr2_75718475_75719584
seq2: B6Ng01-311P12.g_71_1188 (reverse)

seq1  ATTTGGAGTTTCAGTTGATAGCATGGGAATTTAAGATTGACTAAAGTAGA  50
      |||||||| | ||||||||||||| |||| ||||||||||||||   |||
seq2  ATTTGGAG-TCCAGTTGATAGCAT-GGAACTTAAGATTGACTAAGTAAGA  48

seq1  TA-GTGTATGTTTTATGGTTGTGCCCAGTTCTTGATTGAAAAAC-ATGTT  98
      || |||||||||||||||||||| |||| || |||| ||||||| |||||
seq2  TAGGTGTATGTTTTATGGTTGTG-CCAGGTCCTGATGGAAAAACAATGTT  97

seq1  TGT-AATTTCA-CACTTTCATTTTTACAATA-TTTTCACTTAAGCTGCTT  145
      ||| ||||||| ||| |||  |||||||||| ||||||||||||||||||
seq2  TGTAAATTTCACCACCTTCCATTTTACAATATTTTTCACTTAAGCTGCTT  147

seq1  TCAAAATTTCAAACT-GTGTGGTAGAAGAGTTCAATTCA-CAGCAACCA-  192
      |||||| |||||||| ||||||||||||||||||||||| |||||| || 
seq2  TCAAAAATTCAAACTGGTGTGGTAGAAGAGTTCAATTCACCAGCAAACAC  197

seq1  CAGGGCAG-CTCAGAACCATTGGTAAGGGGATCTCCTCTGGTGTGTCTGA  241
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCCTCAGAACAATTGGTAAGGGGATCTCCTCTGGTGTGTCTGA  247

seq1  CGACAGCAGCGGTGTACTCATAGAAAA--GAAAGAATTTATGATTCTGTC  289
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  CGACAGCAGCGGTGTACTCATAGAAAAAGAAAAGAATTTATGATTCTGTC  297

seq1  TTCCAT-GTTGAAAGAGGGGTATCTCTTGCCATTCGAAG-AAAACTGACT  337
      |||||| || ||||||||||||||||||||||||||||| ||||||||||
seq2  TTCCATGGTGGAAAGAGGGGTATCTCTTGCCATTCGAAGAAAAACTGACT  347

seq1  AGTATAAATGAGTCAGTT-CCTTGAAAACTGGCCCCTTGGGTGTATTTAG  386
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTATAAATGAGTCAGTTCCCTTGAAAACTGGCCCCTTGGGTGTATTTAG  397

seq1  ATGACAGCCTCTCCTTCACCAGTCATAAGGGGTGCTCTTTTCTGACTCTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCCTCTCCTTCACCAGTCATAAGGGGTGCTCTTTTCTGACTCTC  447

seq1  TCACCTTTGTTTTCATCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  486
      ||||||||||||||||||     |||||||||||||||||| |||||| |
seq2  TCACCTTTGTTTTCATCA---AATTTTTTTTTTTTTTTTTTCTTTTTTAT  494

seq1  TTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTATCC  536
      || ||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGGTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTATCC  544

seq1  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTG  594

seq1  CCTCTGCCTCTGTTTTCATCATTTTAAGTAATTTAAAATTAACAGATATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTGTTTTCATCATTTTAAGTAATTTAAAATTAACAGATATT  644

seq1  TCCTTATGTTAATGTAGATCACATCAGGAAAGAAATAGTTTGTGAGCTCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTTAATGTAGATCACATCAGGAAAGAAATAGTTTGTGAGCTCT  694

seq1  GTAAATTCTGCAGGAGTTCAAATAAGCTGAAAAAATTAGTTTTGATATGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCTGCAGGAGTTCAAATAAGCTGAAAAAATTAGTTTTGATATGT  744

seq1  ACTTTAAAAAAAGTATATTTGAACATAGTGGAGCATATGTCCTTCTTACT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAAAAGTATATTTGAACATAGTGGAGCATATGTCCTTCTTACT  794

seq1  GGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCT  844

seq1  CCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCGG  894

seq1  AGTGGTTGTACAAGCCTGCAATCCCACCAACAGTGGAGGAGTGTTCCTCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGTACAAGCCTGCAATCCCACCAACAGTGGAGGAGTGTTCCTCT  944

seq1  TTCTCCACATCCTCGCCAGCATCTGCTGTCCCCTGAATTTTTGATCTTAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACATCCTCGCCAGCATCTGCTGTCCCCTGAATTTTTGATCTTAG  994

seq1  CCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATT  1044

seq1  TCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCAT  1094

seq1  TCAGTATTCCTCAGGTGAGAATTC  1110
      ||||||||||||||||||||||||
seq2  TCAGTATTCCTCAGGTGAGAATTC  1118