BAC Information

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BAC

Clone NameB6Ng01-312A07
Chromosome2 (Build37)
Map Location 77,890,090 - 78,009,316
singlet/doubletdoublet
Overlap geneLOC667920
Upstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneOTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312A07.bB6Ng01-312A07.g
ACCGA103593GA103594
length1,160696
definitionB6Ng01-312A07.b B6Ng01-312A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,890,090 - 77,891,220)(78,008,781 - 78,009,316)
sequence
gaattcagatttctaataaaattaatttgagaaaaatcaatgaccctatg
agtttaagaggactttcattattccaaggtaacagtttccaaagcttagt
atgtccttcaaaagcttattgtctaaaatgttctttctcctccttctagg
gcggatttccccttctgggtcatgactaactacattgctcatactagcca
gaattatatatccctgtacattccccacttcttttccactcagaatagtt
gataatctgcgtagttacaagaatatccacgcacagcagtggcttattca
aaaaaggtatcataccactgttgtttcttttccttggcaaaaagggaata
ttttgttcctacaattataacttctaaatattaaaaagtgagtagtgaat
tctgatagacatttcttcaaaaatctgtcaaattagaatacatcttacta
ctaaagtcattttgtgattataagcaataaacttttcttcttgctttttt
cttttctttttccttatttttctgttctttcttcttttccttcctccctt
cctcccttcctccctccctcccttcctttctctccccccaaacccccaga
cagagtttcaggacaaccaggactacacgagaaactctgtacttttactc
ttttatatacacagcctgctttctcatagaaccagcccaggatcaccagc
ccagggatggcaccacccatagtgggcttgtcccttccccagaaatcact
aaatcagaaaatgctccgtagacttgtctacagccagatactatgaaggc
atttctcaattgaggctccctcctctctgatgactctagcttgtgtcaag
ttgccacaaaacgaacctgtacgacatcagagaacaacaagagtcaacaa
tccttgtcctatagtggcaaacttgtctctaaatttgtatctccatattc
atagattaggatagctctgggaacatcatcagagaatttttcttttgtct
tgggtggggcagtagttaaaacagaaacttcataactgaattgcaaggaa
tcttggtgtttttgcagaagtgcctcagccacaaatgacaacatcttaag
tttggcccttttcctaaggctcaggtcattgcggaagggttgtacgaccg
tataaggtac

gaattccagagatatttaattaaacatgtttcctggggtgttttttacat
taagacataactacaccatttctttcccttccctttcttccctctaaccg
gtctcataaccaacagcaacacccctactgcctctccaattcatgccctc
tatttcttggtgattattacatatgtgtaaatgcataaatacataaataa
atctgctcaattcattgcagataagctgattaattacatattaaattcat
ccatcaaaagttctataattagtaagtacgttcaggaagtataaaggata
ggagataaatatataacaattaatggtatttttatatactaacaaacatt
tgagcacacaatttacaaactctgtgagtatgtgtgtgtgtgtgtgtgtg
tgtatgagtgtgtgtgtataaacctagcaaacataaagaatttttaaata
ctattgataatgagaaaggagaacaaaggagatctaaataaataaaaaga
catatctcggtcacctattagagcatgtgacagacaatgaaatgcctgtc
aaaatctcaagtgtttttttccagctattaacacctgctctaactttatg
ttaaaagacaaaaggatcaaaattggactaaaggaccttataaaagaatt
gactgagagagacatcagtctctccagtttcaggaatcacctactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77890090_77891220
seq2: B6Ng01-312A07.b_49_1208

seq1  GAATTCAGATTTCTAATAAAATTAATTTGAGAAAAATCAATGACCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTCTAATAAAATTAATTTGAGAAAAATCAATGACCCTATG  50

seq1  AGTTTAAGAGGACTTTCATTATTCCAAGGTAACAGTTTCCAAAGCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAGGACTTTCATTATTCCAAGGTAACAGTTTCCAAAGCTTAGT  100

seq1  ATGTCCTTCAAAAGCTTATTGTCTAAAATGTTCTTTCTCCTCCTTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTCAAAAGCTTATTGTCTAAAATGTTCTTTCTCCTCCTTCTAGG  150

seq1  GCGGATTTCCCCTTCTGGGTCATGACTAACTACATTGCTCATACTAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTTCCCCTTCTGGGTCATGACTAACTACATTGCTCATACTAGCCA  200

seq1  GAATTATATATCCCTGTACATTCCCCACTTCTTTTCCACTCAGAATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATATCCCTGTACATTCCCCACTTCTTTTCCACTCAGAATAGTT  250

seq1  GATAATCTGCGTAGTTACAAGAATATCCACGCACAGCAGTGGCTTATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCTGCGTAGTTACAAGAATATCCACGCACAGCAGTGGCTTATTCA  300

seq1  AAAAAGGTATCATACCACTGTTGTTTCTTTTCCTTGGCAAAAAGGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTATCATACCACTGTTGTTTCTTTTCCTTGGCAAAAAGGGAATA  350

seq1  TTTTGTTCCTACAATTATAACTTCTAAATATTAAAAAGTGAGTAGTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCTACAATTATAACTTCTAAATATTAAAAAGTGAGTAGTGAAT  400

seq1  TCTGATAGACATTTCTTCAAAAATCTGTCAAATTAGAATACATCTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGACATTTCTTCAAAAATCTGTCAAATTAGAATACATCTTACTA  450

seq1  CTAAAGTCATTTTGTGATTATAAGCAATAAACTTTTCTTCTTGCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTCATTTTGTGATTATAAGCAATAAACTTTTCTTCTTGCTTTTTT  500

seq1  CTTTTCTTTTTCCTTATTTTTCTGTTCTTTCTTCTTTTCCTTCCTCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTCCTTATTTTTCTGTTCTTTCTTCTTTTCCTTCCTCCCTT  550

seq1  CCTCCCTTCCTCCCTCCCTCCCTTCCTTTCTCTCCCCCCAAACCCCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTCCCTCCCTCCCTTCCTTTCTCTCCCCCCAAACCCCCAGA  600

seq1  CAGAGTTTCAGGACAACCAGGACTACACGAGAAACTCTGTACTTTTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCAGGACAACCAGGACTACACGAGAAACTCTGTACTTTTACTC  650

seq1  TTTTATATACACAGCCTGCTTTCTCATAGAACCAGCCCAGGATCACCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATACACAGCCTGCTTTCTCATAGAACCAGCCCAGGATCACCAGC  700

seq1  CCAGGGATGGCACCACCCATAGTGGGCTTGTCCCTTCCCCAGAAATCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGGCACCACCCATAGTGGGCTTGTCCCTTCCCCAGAAATCACT  750

seq1  AAATCAGAAAATGCTCCGTAGACTTGTCTACAGCCAGATACTATGAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAAATGCTCCGTAGACTTGTCTACAGCCAGATACTATGAAGGC  800

seq1  ATTTCTCAATTGAGGCTCCCTCCTCTCTGATGACTCTAGCTTGTGTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAATTGAGGCTCCCTCCTCTCTGATGACTCTAGCTTGTGTCAAG  850

seq1  TTGCCACAAAACGAACCTGTACGACATCAGAGAACAACAAGAGTCAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACAAAACGAACCTGTACGACATCAGAGAACAACAAGAGTCAACAA  900

seq1  TCCTTGTCCTATAGTGGCAAACTTGTCTCTAAATTTGTATCTCCATATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCTATAGTGGCAAACTTGTCTCTAAATTTGTATCTCCATATTC  950

seq1  ATAGATTAGGATAGCTCT-GGAACATCATCAGAGAATTTT--CTTTGTCT  997
      |||||||||||||||||| |||||||||||||||||||||   |||||||
seq2  ATAGATTAGGATAGCTCTGGGAACATCATCAGAGAATTTTTCTTTTGTCT  1000

seq1  --GGT-GGGCAGTAGTTAAAACAGAAAC-TCATAACTGAA-TGCAGGGAA  1042
        ||| |||||||||||||||||||||| ||||||||||| |||| ||||
seq2  TGGGTGGGGCAGTAGTTAAAACAGAAACTTCATAACTGAATTGCAAGGAA  1050

seq1  TC----TGTGTCTGCAG-AGTG-CTCAGCCACAAATGAC-ACATC-TAAG  1084
      ||    ||| | ||||| |||| |||||||||||||||| ||||| ||||
seq2  TCTTGGTGTTTTTGCAGAAGTGCCTCAGCCACAAATGACAACATCTTAAG  1100

seq1  TTTTG-CCTTTCCCTAAGGCTCAGGGCCATTGCAGAAGGG----------  1123
      ||| | ||||| ||||||||||| || |||||| ||||||          
seq2  TTTGGCCCTTTTCCTAAGGCTCA-GGTCATTGCGGAAGGGTTGTACGACC  1149

seq1  ---AAAGGTAC  1131
          |||||||
seq2  GTATAAGGTAC  1160


seq1: chr2_78008781_78009316
seq2: B6Ng01-312A07.g_66_601 (reverse)

seq1  TGTCTGTCACATGCTCTAATAGGTGACCGAGATATGTCTTTTTATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCACATGCTCTAATAGGTGACCGAGATATGTCTTTTTATTTATT  50

seq1  TAGATCTCCTTTGTTCTCCTTTCTCATTATCAATAGTATTTAAAAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCCTTTGTTCTCCTTTCTCATTATCAATAGTATTTAAAAATTCT  100

seq1  TTATGTTTGCTAGGTTTATACACACACACTCATACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTGCTAGGTTTATACACACACACTCATACACACACACACACACA  150

seq1  CACACATACTCACAGAGTTTGTAAATTGTGTGCTCAAATGTTTGTTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACTCACAGAGTTTGTAAATTGTGTGCTCAAATGTTTGTTAGTA  200

seq1  TATAAAAATACCATTAATTGTTATATATTTATCTCCTATCCTTTATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATACCATTAATTGTTATATATTTATCTCCTATCCTTTATACTT  250

seq1  CCTGAACGTACTTACTAATTATAGAACTTTTGATGGATGAATTTAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACGTACTTACTAATTATAGAACTTTTGATGGATGAATTTAATATG  300

seq1  TAATTAATCAGCTTATCTGCAATGAATTGAGCAGATTTATTTATGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATCAGCTTATCTGCAATGAATTGAGCAGATTTATTTATGTATTT  350

seq1  ATGCATTTACACATATGTAATAATCACCAAGAAATAGAGGGCATGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTACACATATGTAATAATCACCAAGAAATAGAGGGCATGAATTG  400

seq1  GAGAGGCAGTAGGGGTGTTGCTGTTGGTTATGAGACCGGTTAGAGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGTAGGGGTGTTGCTGTTGGTTATGAGACCGGTTAGAGGGAAG  450

seq1  AAAGGGAAGGGAAAGAAATGGTGTAGTTATGTCTTAATGTAAAAAACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGGGAAAGAAATGGTGTAGTTATGTCTTAATGTAAAAAACACC  500

seq1  CCAGGAAACATGTTTAATTAAATATCTCTGGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACATGTTTAATTAAATATCTCTGGAATTC  536


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