BAC Information

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BAC

Clone NameB6Ng01-312K08
Chromosome2 (Build37)
Map Location 181,209,106 - 181,275,276
singlet/doubletdoublet
Overlap geneBC050777, Tpd52l2, Dnajc5
Upstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4
Downstream geneUckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312K08.bB6Ng01-312K08.g
ACCGA104063GA104064
length1,050989
definitionB6Ng01-312K08.b B6Ng01-312K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,209,106 - 181,210,155)(181,274,298 - 181,275,276)
sequence
gaattcactctgtagtcaaagcagatcttgggctttcattcttttgcctc
agcctccccaggagtcggaattaaagacctgtaacaccaaccctggctcc
atacttggtcttctgtgcatggctatttcacttagaatatttcttttttt
tttaagatttatttattattatatgtaagtacactgtagctgtcatcaga
cacaccagaagagggagtcagatcttgttacggatggttgtgagccacca
tgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgc
tcttacccactgagccatctcaccagccctttttttttttttttaagtca
cttagaatatttctgaggtgtttttcttcccattgtattgaaaatgtagt
ttgtttattggtcaccagtagatggatacttgggttttcctagtttcatg
aattatgacccatgctatgaacatcttgggtaaaagtctgtataaacatg
tttaatttcttttagatagattcttaggagcagaggctgtgttgctcagt
ggtagagagcttgcctcacatgttctaggtactggcttcagtatccagct
ctgcaaaataacaggagtaaaaactttaagggtaggttgttctatgtctt
gtatcctaagtcttactgtatatttatttttgttttcccatatcaattgt
agatctttaaaggtagagatctcacttctgttgctcattgtcttagtttg
gtttctgtctctgttcaacttgggggaggaaacagtttatttcccaccat
gaagggaagtcaggggagaaactcaaggcaggaacttggaggaagggaac
tgaagcagaagccatagaggaatactgcttcctggtttgctcaacctttc
cttcttttctcttctcttcttttcttttctcgctgttgtagtgctactgg
cctcaaacttgctgtgtagactgggatgacctcaaactatagagaccctc
ctgtctctgctttccaagtactgggataaaaagaatgtgcactgcatacc

gaattccaggctagccagggatatacagtgctaccctgtagaaggaaggg
aaggagaaagcacaaccattaaaaacacaccaaaaaaaaaaaaaaaaaaa
aatcccagcacttgggacagaggcagctggatttcggagttcgaggccag
ccttccaggacagccagggctacacagagaaaccctgtcttgaaaaacca
aaaaagggactggtgagatggctcagtgggtaagagtacccgactgctct
tccgaaggtctggagttcaaatcccagcaaccacatggtggctcacaacc
atctgtaacaagatctgatgccctcttctggagtgtctgaagacaactac
agtgtacttacatataataaataaataaatcttaaaaaaaattactttat
atatataagtgcactcactgttgctgttttcagatacaccagatcccatt
acagatggttgtgagccaccaaccatgtggttgctgggaattgaactcaa
atctctctagcctgaaaagagaaattcttaaactttcttaaatttatcaa
tgatgcccttccccctagtttttcttcaagaaatccctctaaaatagcag
ttctcaacctgtgggtcccaactttttgggagtcagcactttgggctcac
ctgagactgtcagaaaacaggcatttacgttacaatccgaaacagtagca
gcaaactgttctgctatgaaacagcaacaaaagaatgctatggtttatga
ggagctgtaggaaaggctgcagcaacaggaaggttgagaaccactgttct
agaaggtgaaagaatcaaaccgcctggagtgaggataaactctcagttat
tttgggagtgggtggggagctactttaattaacaaactcatcctttgatc
cttttacttacaggaaaatatcatttttaaaaaatgggttgaaaaaataa
agaagagaagctggtcagtgtggcatcacacacttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181209106_181210155
seq2: B6Ng01-312K08.b_46_1095

seq1  GAATTCACTCTGTAGTCAAAGCAGATCTTGGGCTTTCATTCTTTTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGTCAAAGCAGATCTTGGGCTTTCATTCTTTTGCCTC  50

seq1  AGCCTCCCCAGGAGTCGGAATTAAAGACCTGTAACACCAACCCTGGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCCAGGAGTCGGAATTAAAGACCTGTAACACCAACCCTGGCTCC  100

seq1  ATACTTGGTCTTCTGTGCATGGCTATTTCACTTAGAATATTTCTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGGTCTTCTGTGCATGGCTATTTCACTTAGAATATTTCTTTTTTT  150

seq1  TTTAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCATCAGA  200

seq1  CACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCA  250

seq1  TGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGC  300

seq1  TCTTACCCACTGAGCCATCTCACCAGCCCTTTTTTTTTTTTTTTAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCACTGAGCCATCTCACCAGCCCTTTTTTTTTTTTTTTAAGTCA  350

seq1  CTTAGAATATTTCTGAGGTGTTTTTCTTCCCATTGTATTGAAAATGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATATTTCTGAGGTGTTTTTCTTCCCATTGTATTGAAAATGTAGT  400

seq1  TTGTTTATTGGTCACCAGTAGATGGATACTTGGGTTTTCCTAGTTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTGGTCACCAGTAGATGGATACTTGGGTTTTCCTAGTTTCATG  450

seq1  AATTATGACCCATGCTATGAACATCTTGGGTAAAAGTCTGTATAAACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGACCCATGCTATGAACATCTTGGGTAAAAGTCTGTATAAACATG  500

seq1  TTTAATTTCTTTTAGATAGATTCTTAGGAGCAGAGGCTGTGTTGCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCTTTTAGATAGATTCTTAGGAGCAGAGGCTGTGTTGCTCAGT  550

seq1  GGTAGAGAGCTTGCCTCACATGTTCTAGGTACTGGCTTCAGTATCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAGCTTGCCTCACATGTTCTAGGTACTGGCTTCAGTATCCAGCT  600

seq1  CTGCAAAATAACAGGAGTAAAAACTTTAAGGGTAGGTTGTTCTATGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAATAACAGGAGTAAAAACTTTAAGGGTAGGTTGTTCTATGTCTT  650

seq1  GTATCCTAAGTCTTACTGTATATTTATTTTTGTTTTCCCATATCAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTAAGTCTTACTGTATATTTATTTTTGTTTTCCCATATCAATTGT  700

seq1  AGATCTTTAAAGGTAGAGATCTCACTTCTGTTGCTCATTGTCTTAGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTAAAGGTAGAGATCTCACTTCTGTTGCTCATTGTCTTAGTTTG  750

seq1  GTTTCTGTCTCTGTTCAACTTGGGGGAGGAAACAGTTTATTTCCCACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTCTCTGTTCAACTTGGGGGAGGAAACAGTTTATTTCCCACCAT  800

seq1  GAAGGGAAGTCAGGGGAGAAACTCAAGGCAGGAACTTGGAGGAAGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGTCAGGGGAGAAACTCAAGGCAGGAACTTGGAGGAAGGGAAC  850

seq1  TGAAGCAGAAGCCATAGAGGAATACTGCTTCCTGGTTTGCTCAACCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGAAGCCATAGAGGAATACTGCTTCCTGGTTTGCTCAACCTTTC  900

seq1  CTTCTTTTCTCTTCTCTTCTTTTCTTTTCTCGCTG-TGTAGTGCTAACTG  949
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  CTTCTTTTCTCTTCTCTTCTTTTCTTTTCTCGCTGTTGTAGTGCT-ACTG  949

seq1  GCCTCAAACTTGCTGTGTAGACTGGGATGACTTCAAACTAATAGAGACCC  999
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GCCTCAAACTTGCTGTGTAGACTGGGATGACCTCAAACT-ATAGAGACCC  998

seq1  TCCTGTCTCTGCTTCCCAAGTACTGGGATAAAA--GATGTGCACTGCCAT  1047
      |||||||||||||| ||||||||||||||||||   |||||||||| |||
seq2  TCCTGTCTCTGCTTTCCAAGTACTGGGATAAAAAGAATGTGCACTG-CAT  1047

seq1  ACC  1050
      |||
seq2  ACC  1050

seq1: chr2_181274298_181275276
seq2: B6Ng01-312K08.g_69_1057 (reverse)

seq1  CAGG-AGTGTGTG-TGCCACCACTGCCCAGCTCTCTCTT-----TTTTTT  43
      |||| |||||||| ||||| ||||| |||||| ||||||     ||||||
seq2  CAGGAAGTGTGTGATGCCA-CACTGACCAGCT-TCTCTTCTTTATTTTTT  48

seq1  C-ACCCATTTTTTAAAAATGATA-TTTACTGTAAGTAAAAGGATCAAAGG  91
      | ||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  CAACCCATTTTTTAAAAATGATATTTTCCTGTAAGTAAAAGGATCAAAGG  98

seq1  ATGAGTTTG-TAATT-AAGTAGCTCCCCACCCACTCCC-AAATTACTGAG  138
      ||||||||| ||||| |||||||||||||||||||||| |||| ||||||
seq2  ATGAGTTTGTTAATTAAAGTAGCTCCCCACCCACTCCCAAAATAACTGAG  148

seq1  AGTTTATCCTCACTCCAGGCGGTTTGATTCTTTCACCTTCTAGAACAGTG  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCCTCACTCCAGGCGGTTTGATTCTTTCACCTTCTAGAACAGTG  198

seq1  GTTCTCAACCTTCCTGTTGCTGCAGCCTTTCCTACAGCTCCTCATAAACC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAACCTTCCTGTTGCTGCAGCCTTTCCTACAGCTCCTCATAAACC  248

seq1  ATAGCATTCTTTTGTTGCTGTTTCATAGCAGAACAGTTTGCTGCTACTGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTCTTTTGTTGCTGTTTCATAGCAGAACAGTTTGCTGCTACTGT  298

seq1  TTCGGATTGTAACGTAAATGCCTGTTTTCTGACAGTCTCAGGTGAGCCCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGATTGTAACGTAAATGCCTGTTTTCTGACAGTCTCAGGTGAGCCCA  348

seq1  AAGTGCTGACTCCCAAAAAGTTGGGACCCACAGGTTGAGAACTGCTATTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGACTCCCAAAAAGTTGGGACCCACAGGTTGAGAACTGCTATTT  398

seq1  TAGAGGGATTTCTTGAAGAAAAACTAGGGGGAAGGGCATCATTGATAAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGATTTCTTGAAGAAAAACTAGGGGGAAGGGCATCATTGATAAAT  448

seq1  TTAAGAAAGTTTAAGAATTTCTCTTTTCAGGCTAGAGAGATTTGAGTTCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGTTTAAGAATTTCTCTTTTCAGGCTAGAGAGATTTGAGTTCA  498

seq1  ATTCCCAGCAACCACATGGTTGGTGGCTCACAACCATCTGTAATGGGATC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCAACCACATGGTTGGTGGCTCACAACCATCTGTAATGGGATC  548

seq1  TGGTGTATCTGAAAACAGCAACAGTGAGTGCACTTATATATATAAAGTAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATCTGAAAACAGCAACAGTGAGTGCACTTATATATATAAAGTAA  598

seq1  TTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGTTGTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGTTGTC  648

seq1  TTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACTCCAGAAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAG  698

seq1  CCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAGAGCAGTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTCGGAAGAGCAGTC  748

seq1  GGGTACTCTTACCCACTGAGCCATCTCACCAGTCCCTTTTTTGGTTTTTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTCTTACCCACTGAGCCATCTCACCAGTCCCTTTTTTGGTTTTTC  798

seq1  AAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAGGCTGGCCTCG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAGGCTGGCCTCG  848

seq1  AACTCCGAAATCCAGCTGCCTCTGTCCCAAGTGCTGGGATTTTTTTTTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGAAATCCAGCTGCCTCTGTCCCAAGTGCTGGGATTTTTTTTTTT  898

seq1  TTTTTTTTTTGGTGTGTTTTTAATGGTTGTGCTTTCTCCTTCCCTTCCTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTGTGTTTTTAATGGTTGTGCTTTCTCCTTCCCTTCCTT  948

seq1  CTACAGGGTAGCACTGTATATCCCTGGCTAGCCTGGAATTC  979
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGGTAGCACTGTATATCCCTGGCTAGCCTGGAATTC  989