BAC Information

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BAC

Clone NameB6Ng01-313F02
Chromosome2 (Build37)
Map Location 67,226,906 - 67,360,754
singlet/doubletdoublet
Overlap geneCmya3
Upstream geneScn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneLOC621171, LOC227995, B3galt1, Stk39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313F02.bB6Ng01-313F02.g
ACCGA104566GA104567
length1,1591,112
definitionB6Ng01-313F02.b B6Ng01-313F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,359,583 - 67,360,754)(67,226,906 - 67,228,027)
sequence
gaattccataaaatctattacagtcattgcaaaagtcccctttagatgac
tgaaaagagaggaaatttctctgaccagggagaagaagaggtgagcacct
gtcaatgcatttgactgaaggcaatcaacaatccaccccacccccccccc
acacacacgtttagtaagattatgaagaccatcctttttatttcccatct
aaaaagtggctacttagccagtgtactggctagttttgtgtcaacttgac
acagactggagttatcacagagaaaggagcttcagttggggaaatgcctc
cacgagatccagctgtaaggcattttctcaattagtgatcaagaggggaa
aggacccttgtgggtggtgccatctctgggctggtagtcttggttctata
agagagcaggctgagcaagccaggggaagcaagcccgtaagtaacatccc
tccgtggcccctgcatcagctcctgcttcctgacctgcttgagttccagt
cctgacttccttcggtgatgaacagcaatgtggaagtgtaagctgaataa
accctttcctctccaacctgcttcttggtcatgatgtttgtgcaggaata
gaaatcctgactaagacagcctggtatagtgtacacctgtatgtctaatc
caaaatctagtgctgtcggtttgggagtatgcaggacaacaagaagccta
aactacttggtgagtatgtgataggcgacttcagacaggaacattccaca
ggccaaatgttctgtgctctaaagaaacatgttgtgagtcaagaagggaa
tgcactgggagataaaaatgattacaatatgcaacaaaataaaaaataaa
taaattgctagaacacacacagggcagcaacaaggaaaggaaaaaccatg
atcacttgagtgaatattttagtcatgggaatgagtgcatgttctgttta
aaatggagaacacaaaaagtcttccaaagaaggcttgcaagtagtacttc
attacctcggtagtgggtaaatgtggtcgtgctgcaaatgattcggatac
cttgcattgctgtttgactttcttgtttgttgatcatcactaaagtatcg
tctttggaatatgtaggtttggatcttcaatgattgtcagcctttgacta
gggttgtaa

gaattcaaactgcatctcagtcatctttgccttcattatcctagaacatt
tctttagctgtactaattatgcaacacattgggaatgaatgaaaaattag
ggcagagttatgtggttgaagaggttacgctgagatagtttatgaagggc
tactgttaataaactgaacaaaagaaattacctgaaaccttcctggaaac
gataaagattgaaagaggaatgccaggaattcaaaggcaggaatgagcaa
tgattttgttgaagccagatgaggacatccttctcttgtctcttatattt
tggtaatttccctttgtttctgtttccatttttatgcctgtataaaactt
gtttatgtttatttcaatttttatttctctaagggtagggctcaataatt
ctaggagtatatatgagctgcctccatattttaaattcagacagatccat
attttttttaacagcccatatttacttttcttctcttttgtagtcataaa
tacacactcatggggaaaaatataaaacagcaatgcaatttgtgatggtg
atttttttgagtgtagaaagatgatctgtaggatctgtaaagtacttaaa
catttccaaagttcctggaaaatttggcaaattaggtgtttgatattttc
cattgttgcattaaaagatttactattttaagtttatagcaaataaatga
tgaatattgcataaatggcaaagaaatttatcctttcagcccttaagttc
tgctgttttctattcaaggtacctttctgtggtgggaaggggtattgtat
ttgaaacaaagtttcaagctcagtctggccttaaacacataatcctccag
attcagcttcttaagtgatgtaattatgacttccaccacttcaacttcaa
gtagctgtgaaagcactcaatggaataagaggtcagagtttgaaagagac
aggagtgtatgggagcactggagataggaatgaagagagacataccgtaa
tacggacattccagtaaaggagaattttgtctacacatatgaattaacca
caagactgtcgtaagttctatgtaactacttccatagattggaatcgtct
ctcctgtgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67359583_67360754
seq2: B6Ng01-313F02.b_46_1204 (reverse)

seq1  TTACAACACCTAGTC-AAGGCTGACATACAATGAAGACCCAAAACTACAT  49
      ||||||| ||||||| ||||||||||  || |||||| ||||| ||||||
seq2  TTACAAC-CCTAGTCAAAGGCTGACAATCATTGAAGATCCAAACCTACAT  49

seq1  A-TCCAAAGACGGATACTTTTAGGTGATGAATCAGACAAACAAAGAAAGT  98
      | ||||||||| ||||||||   |||||| |||| |||||| ||||||||
seq2  ATTCCAAAGAC-GATACTTT--AGTGATG-ATCA-ACAAAC-AAGAAAGT  93

seq1  CAAACAAGCCAAATGCAAGGTATCCCGAATCATTTGCAGCACGACCACAT  148
      ||||| |||  |||||||||||| ||||||||||||||||||||||||| 
seq2  CAAAC-AGC--AATGCAAGGTAT-CCGAATCATTTGCAGCACGACCACA-  138

seq1  TTTACCCACTAACCGAGGTAATGAAGTACTACTTTGCAAGCCTTCTTTGG  198
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TTTACCCACT-ACCGAGGTAATGAAGTACTAC-TTGCAAGCCTTCTTTGG  186

seq1  AAGACTTTTTTGTGTTCTCCATTTTAAACAGAACATGCACTCATTCCCAT  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAC-TTTTTGTGTTCTCCATTTTAAACAGAACATGCACTCATTCCCAT  235

seq1  GACTAAAATATTCACTCAAGTGATCATGGTTTTTCCTTTCCTTGTTGCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAATATTCACTCAAGTGATCATGGTTTTTCCTTTCCTTGTTGCTG  285

seq1  CCCTGTGTGTGTTCTAGCAATTTATTTATTTTTTATTTTGTTGCATATTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTGTGTTCTAGCAATTTATTTATTTTTTATTTTGTTGCATATTG  335

seq1  TAATCATTTTTATCTCCCAGTGCATTCCCTTCTTGACTCACAACATGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTTTATCTCCCAGTGCATTCCCTTCTTGACTCACAACATGTTT  385

seq1  CTTTAGAGCACAGAACATTTGGCCTGTGGAATGTTCCTGTCTGAAGTCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGCACAGAACATTTGGCCTGTGGAATGTTCCTGTCTGAAGTCGC  435

seq1  CTATCACATACTCACCAAGTAGTTTAGGCTTCTTGTTGTCCTGCATACTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACATACTCACCAAGTAGTTTAGGCTTCTTGTTGTCCTGCATACTC  485

seq1  CCAAACCGACAGCACTAGATTTTGGATTAGACATACAGGTGTACACTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCGACAGCACTAGATTTTGGATTAGACATACAGGTGTACACTATA  535

seq1  CCAGGCTGTCTTAGTCAGGATTTCTATTCCTGCACAAACATCATGACCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTCTTAGTCAGGATTTCTATTCCTGCACAAACATCATGACCAA  585

seq1  GAAGCAGGTTGGAGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGTTGGAGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGC  635

seq1  TGTTCATCACCGAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCACCGAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGC  685

seq1  AGGAGCTGATGCAGGGGCCACGGAGGGATGTTACTTACGGGCTTGCTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGATGCAGGGGCCACGGAGGGATGTTACTTACGGGCTTGCTTCC  735

seq1  CCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGA  785

seq1  GATGGCACCACCCACAAGGGTCCTTTCCCCTCTTGATCACTAATTGAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACCACCCACAAGGGTCCTTTCCCCTCTTGATCACTAATTGAGAA  835

seq1  AATGCCTTACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGAAGCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTACAGCTGGATCTCGTGGAGGCATTTCCCCAACTGAAGCTCCT  885

seq1  TTCTCTGTGATAACTCCAGTCTGTGTCAAGTTGACACAAAACTAGCCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGATAACTCCAGTCTGTGTCAAGTTGACACAAAACTAGCCAGT  935

seq1  ACACTGGCTAAGTAGCCACTTTTTAGATGGGAAATAAAAAGGATGGTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTAAGTAGCCACTTTTTAGATGGGAAATAAAAAGGATGGTCTT  985

seq1  CATAATCTTACTAAACGTGTGTGTGGGGGGGGGGTGGGGTGGATTGTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTTACTAAACGTGTGTGTGGGGGGGGGGTGGGGTGGATTGTTGA  1035

seq1  TTGCCTTCAGTCAAATGCATTGACAGGTGCTCACCTCTTCTTCTCCCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCAGTCAAATGCATTGACAGGTGCTCACCTCTTCTTCTCCCTGG  1085

seq1  TCAGAGAAATTTCCTCTCTTTTCAGTCATCTAAAGGGGACTTTTGCAATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAATTTCCTCTCTTTTCAGTCATCTAAAGGGGACTTTTGCAATG  1135

seq1  ACTGTAATAGATTTTATGGAATTC  1172
      ||||||||||||||||||||||||
seq2  ACTGTAATAGATTTTATGGAATTC  1159


seq1: chr2_67226906_67228027
seq2: B6Ng01-313F02.g_66_1177

seq1  GAATTCAAACTGCATCTCAGTCATCTTTGCCTTCATTATCCTAGAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGCATCTCAGTCATCTTTGCCTTCATTATCCTAGAACATT  50

seq1  TCTTTAGCTGTACTAATTATGCAACACATTGGGAATGAATGAAAAATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGCTGTACTAATTATGCAACACATTGGGAATGAATGAAAAATTAG  100

seq1  GGCAGAGTTATGTGGTTGAAGAGGTTACGCTGAGATAGTTTATGAAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTATGTGGTTGAAGAGGTTACGCTGAGATAGTTTATGAAGGGC  150

seq1  TACTGTTAATAAACTGAACAAAAGAAATTACCTGAAACCTTCCTGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAATAAACTGAACAAAAGAAATTACCTGAAACCTTCCTGGAAAC  200

seq1  GATAAAGATTGAAAGAGGAATGCCAGGAATTCAAAGGCAGGAATGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGATTGAAAGAGGAATGCCAGGAATTCAAAGGCAGGAATGAGCAA  250

seq1  TGATTTTGTTGAAGCCAGATGAGGACATCCTTCTCTTGTCTCTTATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTTGAAGCCAGATGAGGACATCCTTCTCTTGTCTCTTATATTT  300

seq1  TGGTAATTTCCCTTTGTTTCTGTTTCCATTTTTATGCCTGTATAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTCCCTTTGTTTCTGTTTCCATTTTTATGCCTGTATAAAACTT  350

seq1  GTTTATGTTTATTTCAATTTTTATTTCTCTAAGGGTAGGGCTCAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTTTATTTCAATTTTTATTTCTCTAAGGGTAGGGCTCAATAATT  400

seq1  CTAGGAGTATATATGAGCTGCCTCCATATTTTAAATTCAGACAGATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTATATATGAGCTGCCTCCATATTTTAAATTCAGACAGATCCAT  450

seq1  ATTTTTTTTAACAGCCCATATTTACTTTTCTTCTCTTTTGTAGTCATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAACAGCCCATATTTACTTTTCTTCTCTTTTGTAGTCATAAA  500

seq1  TACACACTCATGGGGAAAAATATAAAACAGCAATGCAATTTGTGATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTCATGGGGAAAAATATAAAACAGCAATGCAATTTGTGATGGTG  550

seq1  ATTTTTTTGAGTGTAGAAAGATGATCTGTAGGATCTGTAAAGTACTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGAGTGTAGAAAGATGATCTGTAGGATCTGTAAAGTACTTAAA  600

seq1  CATTTCCAAAGTTCCTGGAAAATTTGGCAAATTAGGTGTTTGATATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAAAGTTCCTGGAAAATTTGGCAAATTAGGTGTTTGATATTTTC  650

seq1  CATTGTTGCATTAAAAGATTTACTATTTTAAGTTTATAGCAAATAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGCATTAAAAGATTTACTATTTTAAGTTTATAGCAAATAAATGA  700

seq1  TGAATATTGCATAAATGGCAAAGAAATTTATCCTTTCAGCCCTTAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGCATAAATGGCAAAGAAATTTATCCTTTCAGCCCTTAAGTTC  750

seq1  TGCTGTTTTCTATTCAAGGTACCTTTCTGTGGTGGGAAGGGGTATTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTTCTATTCAAGGTACCTTTCTGTGGTGGGAAGGGGTATTGTAT  800

seq1  TTGAAACAAAGTTTCAAGCTCAGTCTGGCCTTAAACACATAATCCTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAAAGTTTCAAGCTCAGTCTGGCCTTAAACACATAATCCTCCAG  850

seq1  ATTCAGCTTCTTAAGTGATGTAATTATGACTTCCACCACTTCAAACTTCA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  ATTCAGCTTCTTAAGTGATGTAATTATGACTTCCACCACTTC-AACTTC-  898

seq1  AAGTAGCTGTGAAAGCACTCAATGGAATAAGAGGTCAAGAGTTTGAAAGA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTAGCTGTGAAAGCACTCAATGGAATAAGAGGTC-AGAGTTTGAAAGA  947

seq1  GAACAAGAGGTGTATGGGAGGCACTGGAGATAGGAAAGGAAAGAGAGACA  1000
      | ||| || |||||||||| |||||||||||||||| |  ||||||||||
seq2  G-ACAGGA-GTGTATGGGA-GCACTGGAGATAGGAATG--AAGAGAGACA  992

seq1  TAACGTAATTACAGACAAATTCCAGAAAGGGAG-ATTTTGTCTACACATA  1049
      || ||||| ||| |||  ||||||| || |||| ||||||||||||||||
seq2  TACCGTAA-TACGGAC--ATTCCAGTAAAGGAGAATTTTGTCTACACATA  1039

seq1  TG-ATTAA-CACAAGACTGTCGAAAAGTCACTATGGAACTACTTCCAATA  1097
      || ||||| ||||||||||||| ||  |  ||||| |||||||||| |||
seq2  TGAATTAACCACAAGACTGTCGTAAGTT--CTATGTAACTACTTCC-ATA  1086

seq1  GA-TGGAATCGTC-CTCCTGTGCTCAG  1122
      || |||||||||| |||||||| ||||
seq2  GATTGGAATCGTCTCTCCTGTG-TCAG  1112


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