BAC Information

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BAC

Clone NameB6Ng01-313K18
Chromosome2 (Build37)
Map Location 164,867,475 - 165,011,348
singlet/doubletdoublet
Overlap geneCd40, Cdh22
Upstream geneLOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313K18.bB6Ng01-313K18.g
ACCGA104816GA104817
length1,1101,076
definitionB6Ng01-313K18.b B6Ng01-313K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,010,224 - 165,011,348)(164,867,475 - 164,868,549)
sequence
gaattccttgtccagatctgaagtttaccctcagctgtaactcagccctg
agcacctgaccctgggttgcacagcactgccttccacgacattctgacac
atcacatccagatgtggtcctctctacccacaatgtcttcaatgccacaa
gaagagacctccctgtgcctctgtggtcaggccacttgcaccccctttca
gagctgttgacatttcccacagtcaaggcatagttctcagaaccagccta
gaccctcctggctgtcacaactctccatgtgtgtgcatgtgcatgtgtgt
gttcactatactcctatgctcaaacctacctagaattccatcctcacagt
atgaacttgagagaccctagagttccaacaacctgctgccacatagccac
cacaccaggctccccgatgtcctctcactttccatgtgcttggatcccag
ggcctttgctctttcccctacctcagaccagagtgctcactttcgtgtta
tggcatctcctctctgtgtgaacagattctttttttttttcaaataatat
cttcatggcaagccttccctagccactctgtacaagttatcatttaaaac
gattgctaagttgatggataagcaaatggatagatgatagagaatatata
aatactcccccaaccctgttactctgctttgttttctcaagaacacctga
ccattatctaatacaattttctgttactgtaacagaatgtcggggggctg
aataagttataaataaaacggtagccacccatggtgacctatgcctttga
tcccagcactcaagaggcagagacaggcagatctgttactttgatgccag
cctggtctacacagtgagttcctggctagccagagctacatagagagacc
ctgtctcaaaacaacaaattaaaaactcacagctcacagcttgtttgatc
ctagaggctggaaagtccaaggatatattgggagatgtgaagatggccca
aggtaaaagaggaaacagagagagacttttgggatcccttttctagggag
ctgcatagtctcagaataccatcatcttaagtacacatcaacaccttaac
agtcactcaa
gaattcccagctgggcaggaaaatccatttttctttccccacttctttct
ttcttcccctctatatattaataaaagaccgttccatcccttctctacag
cgagaagcaggttttacagaagcaatggtagctattaacacctcagggcc
cactatccctttctcatctcacctgcaggctactgagatctcctcagcat
tccagagcaaaaggtcaatggccgtaagggatggatgcctgcctccacag
aaagtctctctagtcgtcacagggacctgtgtgaattatctctcaggtct
gagctctagtgactggaatagagcagttcatttctgggcaggcaaaaaca
ggttagagctggctgtcacattcccacaatgccttcttccttggaaagtt
tttgacttctccagacagcccgaggaggtcgcaagcacactaacacttag
aaacaaagctagtcaccaatggtgacctctcttggggtagatgagagact
gagggtgctctttgagacaggaactttgccgagcactgtatacatactct
ttaactacatgaaacacagatattgctctcccagtttctggatgagaata
ctgtgtctcagaggagcagataattacccaagggcataaggcagtttgct
tgtggtgggatctttgctatcaatatgtcccatataaaaacagtgattct
tccttccattttacagatgggtaaactgagactcaaaagatgtgaattca
ttctgctccctcttatggtgcaacattgttaatagtcaggatttgaactc
atgtcattgagacttcaaagccctcttgttctactgtaccttgtggcttt
tttttttttttttaaatgggaataccatgggaaacgtagcctgggtgaag
ttgatggttggccatgtgttatggctgcagcaagtgtggctgttgtcaat
ccctcaggattagatgatatgggaaggaatactacttttctcattcctgt
ttgtgagtcacatgcgagcaggtgagaaattacacacttatcataaggga
ctccattagtccctcatttgtttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165010224_165011348
seq2: B6Ng01-313K18.b_48_1157 (reverse)

seq1  TTGAGTGACTGTTAAGGGTGTTGGATGTGGTACCTTAAAGGATGGTTGGG  50
      ||||||||||||||| |||||| ||||| |||| | | | |||||     
seq2  TTGAGTGACTGTTAA-GGTGTT-GATGT-GTACTTAAGATGATGG-----  42

seq1  TTATTCTGGAGAACTAATGCAGCTCCCTAGAAAAGGGGATCCCCAAAAGT  100
       |||||| ||| ||| |||||||||||||||||| ||||| |||||||||
seq2  -TATTCT-GAG-ACT-ATGCAGCTCCCTAGAAAA-GGGAT-CCCAAAAGT  86

seq1  CTCTCTTCTTGTTTCCTCTTTTACCTTGGGCCATCTTCACATCT-CCAAT  149
      ||||||   ||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTCT--CTGTTTCCTCTTTTACCTTGGGCCATCTTCACATCTCCCAAT  134

seq1  ATATCCTTGGACTTTCCAGCCTCTAGGATCAAACAAGCTGTGAGCTGTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTGGACTTTCCAGCCTCTAGGATCAAACAAGCTGTGAGCTGTGA  184

seq1  GTTTTTAATTTGTTTGTTTTGAGACAGGGTCTCTCTATGTAGCTCTGGCT  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATTTG-TTGTTTTGAGACAGGGTCTCTCTATGTAGCTCTGGCT  233

seq1  AGCCAGGAACTCACTGTGTAGACCAGGCTGGCATCAAAGTAACAGATCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGAACTCACTGTGTAGACCAGGCTGGCATCAAAGTAACAGATCTG  283

seq1  CCTGTCTCTGCCTCTTGAGTGCTGGGATCAAAGGCATAGGTCACCATGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGCCTCTTGAGTGCTGGGATCAAAGGCATAGGTCACCATGGG  333

seq1  TGGCTACCGTTTTATTTATAACTTATTCAG-CCCCCGACATTCTGTTACA  398
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGCTACCGTTTTATTTATAACTTATTCAGCCCCCCGACATTCTGTTACA  383

seq1  GTAACAGAAAATTGTATTAGATAATGGTCAGGTGTTCTTGAGAAAACAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGAAAATTGTATTAGATAATGGTCAGGTGTTCTTGAGAAAACAAA  433

seq1  GCAGAGTAACAGGGTTGGGGGAGTATTTATATATTCTCTATCATCTATCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAACAGGGTTGGGGGAGTATTTATATATTCTCTATCATCTATCC  483

seq1  ATTTGCTTATCCATCAACTTAGCAATCGTTTTAAATGATAACTTGTACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTATCCATCAACTTAGCAATCGTTTTAAATGATAACTTGTACAG  533

seq1  AGTGGCTAGGGAAGGCTTGCCATGAAGATATTATTTGAAAAAAAAAAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTAGGGAAGGCTTGCCATGAAGATATTATTTGAAAAAAAAAAAGA  583

seq1  ATCTGTTCACACAGAGAGGAGATGCCATAACACGAAAGTGAGCACTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCACACAGAGAGGAGATGCCATAACACGAAAGTGAGCACTCTGG  633

seq1  TCTGAGGTAGGGGAAAGAGCAAAGGCCCTGGGATCCAAGCACATGGAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTAGGGGAAAGAGCAAAGGCCCTGGGATCCAAGCACATGGAAAG  683

seq1  TGAGAGGACATCGGGGAGCCTGGTGTGGTGGCTATGTGGCAGCAGGTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGACATCGGGGAGCCTGGTGTGGTGGCTATGTGGCAGCAGGTTGT  733

seq1  TGGAACTCTAGGGTCTCTCAAGTTCATACTGTGAGGATGGAATTCTAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCTAGGGTCTCTCAAGTTCATACTGTGAGGATGGAATTCTAGGT  783

seq1  AGGTTTGAGCATAGGAGTATAGTGAACACACACATGCACATGCACACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAGCATAGGAGTATAGTGAACACACACATGCACATGCACACACA  833

seq1  TGGAGAGTTGTGACAGCCAGGAGGGTCTAGGCTGGTTCTGAGAACTATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTGTGACAGCCAGGAGGGTCTAGGCTGGTTCTGAGAACTATGC  883

seq1  CTTGACTGTGGGAAATGTCAACAGCTCTGAAAGGGGGTGCAAGTGGCCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGTGGGAAATGTCAACAGCTCTGAAAGGGGGTGCAAGTGGCCTG  933

seq1  ACCACAGAGGCACAGGGAGGTCTCTTCTTGTGGCATTGAAGACATTGTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGGCACAGGGAGGTCTCTTCTTGTGGCATTGAAGACATTGTGG  983

seq1  GTAGAGAGGACCACATCTGGATGTGATGTGTCAGAATGTCGTGGAAGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGGACCACATCTGGATGTGATGTGTCAGAATGTCGTGGAAGGCA  1033

seq1  GTGCTGTGCAACCCAGGGTCAGGTGCTCAGGGCTGAGTTACAGCTGAGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGCAACCCAGGGTCAGGTGCTCAGGGCTGAGTTACAGCTGAGGG  1083

seq1  TAAACTTCAGATCTGGACAAGGAATTC  1125
      |||||||||||||||||||||||||||
seq2  TAAACTTCAGATCTGGACAAGGAATTC  1110

seq1: chr2_164867475_164868549
seq2: B6Ng01-313K18.g_70_1145

seq1  GAATTCCCAGCTGGGCAGGAAAATCCATTTTTCTTTCCCCACTTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTGGGCAGGAAAATCCATTTTTCTTTCCCCACTTCTTTCT  50

seq1  TTCTTCCCCTCTATATATTAATAAAAGACCGTTCCATCCCTTCTCTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCCTCTATATATTAATAAAAGACCGTTCCATCCCTTCTCTACAG  100

seq1  CGAGAAGCAGGTTTTACAGAAGCAATGGTAGCTATTAACACCTCAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGCAGGTTTTACAGAAGCAATGGTAGCTATTAACACCTCAGGGCC  150

seq1  CACTATCCCTTTCTCATCTCACCTGCAGGCTACTGAGATCTCCTCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCCTTTCTCATCTCACCTGCAGGCTACTGAGATCTCCTCAGCAT  200

seq1  TCCAGAGCAAAAGGTCAATGGCCGTAAGGGATGGATGCCTGCCTCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCAAAAGGTCAATGGCCGTAAGGGATGGATGCCTGCCTCCACAG  250

seq1  AAAGTCTCTCTAGTCGTCACAGGGACCTGTGTGAATTATCTCTCAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCTCTAGTCGTCACAGGGACCTGTGTGAATTATCTCTCAGGTCT  300

seq1  GAGCTCTAGTGACTGGAATAGAGCAGTTCATTTCTGGGCAGGCAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTAGTGACTGGAATAGAGCAGTTCATTTCTGGGCAGGCAAAAACA  350

seq1  GGTTAGAGCTGGCTGTCACATTCCCACAATGCCTTCTTCCTTGGAAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGCTGGCTGTCACATTCCCACAATGCCTTCTTCCTTGGAAAGTT  400

seq1  TTTGACTTCTCCAGACAGCCCGAGGAGGTCGCAAGCACACTAACACTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTCTCCAGACAGCCCGAGGAGGTCGCAAGCACACTAACACTTAG  450

seq1  AAACAAAGCTAGTCACCAATGGTGACCTCTCTTGGGGTAGATGAGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGCTAGTCACCAATGGTGACCTCTCTTGGGGTAGATGAGAGACT  500

seq1  GAGGGTGCTCTTTGAGACAGGAACTTTGCCGAGCACTGTATACATACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCTCTTTGAGACAGGAACTTTGCCGAGCACTGTATACATACTCT  550

seq1  TTAACTACATGAAACACAGATATTGCTCTCCCAGTTTCTGGATGAGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACATGAAACACAGATATTGCTCTCCCAGTTTCTGGATGAGAATA  600

seq1  CTGTGTCTCAGAGGAGCAGATAATTACCCAAGGGCATAAGGCAGTTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCAGAGGAGCAGATAATTACCCAAGGGCATAAGGCAGTTTGCT  650

seq1  TGTGGTGGGATCTTTGCTATCAATATGTCCCATATAAAAACAGTGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGGATCTTTGCTATCAATATGTCCCATATAAAAACAGTGATTCT  700

seq1  TCCTTCCATTTTACAGATGGGTAAACTGAGACTCAAAAGATGTGAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCATTTTACAGATGGGTAAACTGAGACTCAAAAGATGTGAATTCA  750

seq1  TTCTGCTCCCTCTTATGGTGCAACATTGTTAATAGTCAGGATTTGAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCCCTCTTATGGTGCAACATTGTTAATAGTCAGGATTTGAACTC  800

seq1  ATGTCATTGAGACTTCAAAGCCCTCTTGTTCTACTGTACCTTGTGGCTTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  ATGTCATTGAGACTTCAAAGCCCTCTTGTTCTACTGTACCTTGTGGC---  847

seq1  TTTTTTTTTTTTTTTTTTAAATGGGAATACCAT-GGAAACGTAGCCTGGG  899
        ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  --TTTTTTTTTTTTTTTTAAATGGGAATACCATGGGAAACGTAGCCTGGG  895

seq1  TG-AGTTGATGGTTGGCCATGTG-TATGGCTGCAGCAAGTGTGGCTG-TG  946
      || |||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TGAAGTTGATGGTTGGCCATGTGTTATGGCTGCAGCAAGTGTGGCTGTTG  945

seq1  TC-ATCCCTCAGGATTAGATGATATGGAAAGAAATAACTACTTTTCTCAT  995
      || |||||||||||||||||||||||| ||| ||| ||||||||||||||
seq2  TCAATCCCTCAGGATTAGATGATATGGGAAGGAAT-ACTACTTTTCTCAT  994

seq1  TCCTGTTGTGGAGTCACATGCGAGCAGGTGAGAAA-TACACAC-TATCAT  1043
      |||||||   ||||||||||||||||||||||||| ||||||| ||||||
seq2  TCCTGTTTGTGAGTCACATGCGAGCAGGTGAGAAATTACACACTTATCAT  1044

seq1  AAGGAGAACTCCATTAG-CCCCCA-TTGTTTAGA  1075
      |||  | |||||||||| ||| || |||||||||
seq2  AAG--GGACTCCATTAGTCCCTCATTTGTTTAGA  1076