BAC Information

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BAC

Clone NameB6Ng01-314D15
Chromosome2 (Build37)
Map Location 123,193,034 - 123,339,265
singlet/doubletdoublet
Overlap genenone
Upstream geneShf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314D15.bB6Ng01-314D15.g
ACCGA105224GA105225
length1,078969
definitionB6Ng01-314D15.b B6Ng01-314D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,193,034 - 123,194,108)(123,338,376 - 123,339,265)
sequence
gaattccaagagttttaccatatttcatgttaatttatgatgcaaagctt
ttgcaattgggtctccatgattgaagaaaatttatccattttcaaattca
tagaaatttgtagcaaattaataatatgtcagcctataggacatggaaga
gaaataaagatggaataaacatactttccccggataagttaccatactag
aaaatgtgatagttcagttgggtatagaaaaccatcactccattaagcag
agaaaaggcaaaaggcattgcaaagaatagcaagggttgtaaggtagtgt
aataatttcaaataatggcaaggttatcagtgaaggtatcatacgcaggg
aatggtggaaaagagtgtttgaaataaagtacagagccagttactagtta
tcatgctaaaagttaaacaatagtgacatttttcttcatatttcttttgt
agtttgcactcgcaagtgattacctgatacaaaatatctagaacatttta
attcatttcactgggaggaaagcaaactttcatccagaaagaaattctct
aatttcctaataggattaattttgcacattctttccattggaaatgaata
tttcacattttatttgttacattttctgggaagaaaagctagatatctga
tcatgaattttaaagagttgaattttgtttttatatagcacattctgaca
gaaaatatcaagatgaattgagggcaaggtgcacatctctttttcccctt
tacagtattttaattcagccataatttcctatcattttataccaatatac
catgtaaatttctgattttgacctggtcattttctcatgttatttgttct
gacttcatagagacaagctcttcctgaaacctttatatccaaatccagta
ttatactcttcaggcactacaacaaatcttggctcatctgtaaatcgtgt
ctgattagagactccaaataaaagtttaaaaacaaaaacatgaggaagta
aatgtatttaagagtgttctcagtaaaatcacttggacagttgagaagca
ctgtaccaaaaaaggaaagagtttaagc

gaattcagtgttctggcttcaggagatagtacgccatgcttcttatttag
aaggattatgtgccccaaggatggtggccaccaggtaatgcctgaatttt
ctccttcaattcaaaatactaaagaaagagaagagaaactagggagatgg
ctcagtttgtaaagtacgtgcttagcaaacatgaattgggtccccagaac
ccacagaaaaatgttgggcaaggtggtgtatgctgaggacacaggaagat
cactgggactcacttgctagccatcctagcatcgtgggtgtgcctcaggt
taatgagatcctgtccataggcattagaaagaattctcaaggtgactccc
aaagttgttttctagctctgctctctttctctctctttctcacacacaaa
cgtacacatatacacacccacccacacatatgcacatacatacagatttc
acaagaacaaaagaggaaaggaagaaatagtaagaatatttgaagataca
attgttagtaacattcccacaaatcatcaagggtctatcatccagggaag
caaagcaaagattgcagcaagagatcattcagctaagcaaacgtacaaaa
ttgacttacacatcatatcccaagtgctgtggagcaaaggaccagagaga
ccttaggaaaagacaggaaagaaacccatctggcacaaacagttgaaaag
caactctacaaaacacatgacagttctcattaaagacagagagctaaatg
acaacagaaaatgctgaaaacacaaattctagaatccagaaagaatatcc
agaggaagcaatctagcaatgtttaaaaagagaataaacaaatatcactt
caaaaaagagacaaagctgaaacaattcactcaaagcacacctgtacttt
gtaaaatattagcacagtttcattatgcagactgaatattattctcagaa
acttgggtctatatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123193034_123194108
seq2: B6Ng01-314D15.b_46_1123

seq1  GAATTCCAAGAGTTTTACCATATTTCATGTTAATTTATGATGCAAAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGTTTTACCATATTTCATGTTAATTTATGATGCAAAGCTT  50

seq1  TTGCAATTGGGTCTCCATGATTGAAGAAAATTTATCCATTTTCAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTGGGTCTCCATGATTGAAGAAAATTTATCCATTTTCAAATTCA  100

seq1  TAGAAATTTGTAGCAAATTAATAATATGTCAGCCTATAGGACATGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTGTAGCAAATTAATAATATGTCAGCCTATAGGACATGGAAGA  150

seq1  GAAATAAAGATGGAATAAACATACTTTCCCCGGATAAGTTACCATACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGATGGAATAAACATACTTTCCCCGGATAAGTTACCATACTAG  200

seq1  AAAATGTGATAGTTCAGTTGGGTATAGAAAACCATCACTCCATTAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGATAGTTCAGTTGGGTATAGAAAACCATCACTCCATTAAGCAG  250

seq1  AGAAAAGGCAAAAGGCATTGCAAAGAATAGCAAGGGTTGTAAGGTAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCAAAAGGCATTGCAAAGAATAGCAAGGGTTGTAAGGTAGTGT  300

seq1  AATAATTTCAAATAATGGCAAGGTTATCAGTGAAGGTATCATACGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCAAATAATGGCAAGGTTATCAGTGAAGGTATCATACGCAGGG  350

seq1  AATGGTGGAAAAGAGTGTTTGAAATAAAGTACAGAGCCAGTTACTAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGAAAAGAGTGTTTGAAATAAAGTACAGAGCCAGTTACTAGTTA  400

seq1  TCATGCTAAAAGTTAAACAATAGTGACATTTTTCTTCATATTTCTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTAAAAGTTAAACAATAGTGACATTTTTCTTCATATTTCTTTTGT  450

seq1  AGTTTGCACTCGCAAGTGATTACCTGATACAAAATATCTAGAACATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCACTCGCAAGTGATTACCTGATACAAAATATCTAGAACATTTTA  500

seq1  ATTCATTTCACTGGGAGGAAAGCAAACTTTCATCCAGAAAGAAATTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCACTGGGAGGAAAGCAAACTTTCATCCAGAAAGAAATTCTCT  550

seq1  AATTTCCTAATAGGATTAATTTTGCACATTCTTTCCATTGGAAATGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTAATAGGATTAATTTTGCACATTCTTTCCATTGGAAATGAATA  600

seq1  TTTCACATTTTATTTGTTACATTTTCTGGGAAGAAAAGCTAGATATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTTTATTTGTTACATTTTCTGGGAAGAAAAGCTAGATATCTGA  650

seq1  TCATGAATTTTAAAGAGTTGAATTTTGTTTTTATATAGCACATTCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTTTAAAGAGTTGAATTTTGTTTTTATATAGCACATTCTGACA  700

seq1  GAAAATATCAAGATGAATTGAGGGCAAGGTGCACATCTCTTTTTCCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCAAGATGAATTGAGGGCAAGGTGCACATCTCTTTTTCCCCTT  750

seq1  TACAGTATTTTAATTCAGCCATAATTTCCTATCATTTTATACCAATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATTTTAATTCAGCCATAATTTCCTATCATTTTATACCAATATAC  800

seq1  CATGTAAATTTCTGATTTTGACCTGGTCATTTTCTCATGTTATTTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATTTCTGATTTTGACCTGGTCATTTTCTCATGTTATTTGTTCT  850

seq1  GACTTCATAGAGACAAGCTCTTCCTGAAACCTTTATATCCAAATCCAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATAGAGACAAGCTCTTCCTGAAACCTTTATATCCAAATCCAGTA  900

seq1  TTATACTCTTCAGGCACTACAACAAATCTTGGCTCATCTGTAAATCGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCTTCAGGCACTACAACAAATCTTGGCTCATCTGTAAATCGTGT  950

seq1  CTGATTAGAGACTCCAAATAAAAGGTTTAAAAC-AAAACATGAGGAAGT-  998
      |||||||||||||||||||||||| || ||||| ||||||||||||||| 
seq2  CTGATTAGAGACTCCAAATAAAAGTTTAAAAACAAAAACATGAGGAAGTA  1000

seq1  AATGTATTTAAGAGTGTTCTCAGTAAAATCCACTTGGACAGTTGAGAAGC  1048
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATGTATTTAAGAGTGTTCTCAGTAAAAT-CACTTGGACAGTTGAGAAGC  1049

seq1  ACTGTAAC-AAAAAGGAAAGAG-TTAAGC  1075
      |||||| | ||||||||||||| ||||||
seq2  ACTGTACCAAAAAAGGAAAGAGTTTAAGC  1078


seq1: chr2_123338376_123339265
seq2: B6Ng01-314D15.g_66_955 (reverse)

seq1  TGTGCTTTGAGTGAATTGTTTCAGCTTTGTCTCTTTTTTGAAGTGATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGAGTGAATTGTTTCAGCTTTGTCTCTTTTTTGAAGTGATATT  50

seq1  TGTTTATTCTCTTTTTAAACATTGCTAGATTGCTTCCTCTGGATATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTCTCTTTTTAAACATTGCTAGATTGCTTCCTCTGGATATTCTT  100

seq1  TCTGGATTCTAGAATTTGTGTTTTCAGCATTTTCTGTTGTCATTTAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTCTAGAATTTGTGTTTTCAGCATTTTCTGTTGTCATTTAGCTC  150

seq1  TCTGTCTTTAATGAGAACTGTCATGTGTTTTGTAGAGTTGCTTTTCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTAATGAGAACTGTCATGTGTTTTGTAGAGTTGCTTTTCAACT  200

seq1  GTTTGTGCCAGATGGGTTTCTTTCCTGTCTTTTCCTAAGGTCTCTCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCCAGATGGGTTTCTTTCCTGTCTTTTCCTAAGGTCTCTCTGGT  250

seq1  CCTTTGCTCCACAGCACTTGGGATATGATGTGTAAGTCAATTTTGTACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCCACAGCACTTGGGATATGATGTGTAAGTCAATTTTGTACGT  300

seq1  TTGCTTAGCTGAATGATCTCTTGCTGCAATCTTTGCTTTGCTTCCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGCTGAATGATCTCTTGCTGCAATCTTTGCTTTGCTTCCCTGGA  350

seq1  TGATAGACCCTTGATGATTTGTGGGAATGTTACTAACAATTGTATCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACCCTTGATGATTTGTGGGAATGTTACTAACAATTGTATCTTCA  400

seq1  AATATTCTTACTATTTCTTCCTTTCCTCTTTTGTTCTTGTGAAATCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTACTATTTCTTCCTTTCCTCTTTTGTTCTTGTGAAATCTGTA  450

seq1  TGTATGTGCATATGTGTGGGTGGGTGTGTATATGTGTACGTTTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCATATGTGTGGGTGGGTGTGTATATGTGTACGTTTGTGTGTG  500

seq1  AGAAAGAGAGAGAAAGAGAGCAGAGCTAGAAAACAACTTTGGGAGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAGAAAGAGAGCAGAGCTAGAAAACAACTTTGGGAGTCACC  550

seq1  TTGAGAATTCTTTCTAATGCCTATGGACAGGATCTCATTAACCTGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTCTTTCTAATGCCTATGGACAGGATCTCATTAACCTGAGGCA  600

seq1  CACCCACGATGCTAGGATGGCTAGCAAGTGAGTCCCAGTGATCTTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGATGCTAGGATGGCTAGCAAGTGAGTCCCAGTGATCTTCCTGT  650

seq1  GTCCTCAGCATACACCACCTTGCCCAACATTTTTCTGTGGGTTCTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGCATACACCACCTTGCCCAACATTTTTCTGTGGGTTCTGGGGA  700

seq1  CCCAATTCATGTTTGCTAAGCACGTACTTTACAAACTGAGCCATCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCATGTTTGCTAAGCACGTACTTTACAAACTGAGCCATCTCCCT  750

seq1  AGTTTCTCTTCTCTTTCTTTAGTATTTTGAATTGAAGGAGAAAATTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCTTCTCTTTCTTTAGTATTTTGAATTGAAGGAGAAAATTCAGG  800

seq1  CATTACCTGGTGGCCACCATCCTTGGGGCACATAATCCTTCTAAATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTGGTGGCCACCATCCTTGGGGCACATAATCCTTCTAAATAAGA  850

seq1  AGCATGGCGTACTATCTCCTGAAGCCAGAACACTGAATTC  890
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCGTACTATCTCCTGAAGCCAGAACACTGAATTC  890


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