BAC Information

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BAC

Clone NameB6Ng01-314H14
Chromosome2 (Build37)
Map Location 33,487,135 - 33,639,375
singlet/doubletdoublet
Overlap geneLmx1b, LOC100041918, 2610528K11Rik
Upstream geneAk1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764
Downstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314H14.bB6Ng01-314H14.g
ACCGA105399GA105400
length1,0981,028
definitionB6Ng01-314H14.b B6Ng01-314H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,487,135 - 33,488,217)(33,638,351 - 33,639,375)
sequence
gaattccttcataaatcagcggccgggtgaaagggttgcgcgttagaaag
ggcaggaccgtgtgcgcgtattagagcgcgcggttcccaaatccgggcta
aacccctggtgacaccgaaattcatcaaccaccgccaatgcccctgctcc
atctacggaggagcccgggagcctgcataccctagctgcttcactccggg
gaaaagagaatcccgggaggcaggactggctgaggcgagctcctggaaca
ctgcacagacccgggctgcggtgagccgcattgccagtcccgctggcaaa
gggggctctcccctctgggaaggagttattctaacctttctgtcctccgg
tcagggctggcctctcgggagcactcgccgctctccccctcctcccccca
accttccaggccggtgctctgaagagaggtatctagcatctagggcttca
gcaagtcaggacaaggcgatctagggatctcaggaagggagggaggccct
ctggagcccgttccctcacccacaggtcccgctgggggcgtaaagtcagc
gtactccacaggcactctacaaataacgttctttttggaagcaatgctac
ctcaggcccatcgcgctcagccccgctccgctcttgcaagttcatgtgcg
ttggtcaagccccagagtgctagagaaaatggtccctgaggttgcccgtt
gtggcggccttgcggtgctgcctggggtgggaagcatgcatatttccttc
ccaggggatccagcagaagagcggttgcactccatgagcctcccacgcag
ggtagacagacaacgtgttcctgcctccagcttacttcccagcaggaggg
aaaaaaatacacactgacactgagtgtcccattcaggctggtacctctaa
cttgcttcactttgtcacaacctaagatgggacccgtcatccccatttca
cagaggagaaaaatctctggcctccggtctgtagggagatagtttagggg
tctggtatctcaaggctgcacttggcccagctactccctttttggacccc
tttttcctctttatgctttaaaatcacatactcaggagctttaggtta
gaattccaaggcacacctccagggagtgacccacttcttccaaatagcgc
cttcagcacctgagactgtgccagacttctgggtaggtaggcaggcaggc
aggcagaggcagagcgtctgggctggtgttcctctgttcacagtctagat
ggtaatgttagccaaacttgagtccttaggttccagactgtagctgtagc
cctgtttctccagggtttgttttcctagcgacagatggagctcttggacc
aggcagctctcctgatagctgtcctcaccctcactgctcggaggccccgt
tgagagcagaggcatcataggtgctggactcagatggcttcgtcagccct
gatggagctgatgtgtttgctggacatgagcttggctttcactcctgtaa
gaagcgaatgcagtggggcctagggagaaggctcagctgttaagagtgca
cactgctcttacagaggaccaggttcagttcccagcaccttacagctgcc
tataactttggcttcagcaggacccactgcctctggcctccttggatcac
tgtgctcatgtgcacatacccacacaccaacatgcagaaatacacatact
taaaaagtgacaaaattttatcttttttaaaaaaaaaaaaagaaaacaaa
gaactaaataaaaggcctttttccagacacatggctcattgatagatttt
tgttcttttttttctctttgttaaatcaaaaccagatgcaaaccatttcc
tttctgaattacgaaagtcccatgttcactactaaaaacaaaagttgaaa
aaatacatgaaagtatgggaagaaaataaatgtcactcataatctctttg
ttcataaaacaatgttttagagactatcctttcttgactttttttttttt
tttgagggggagactgggacatttatatgcaaaggtaattgtccattctg
gatattttttaatttgatttattggagtccagttttacatacatgcaatt
ccattacttttatgcgtacaggctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33487135_33488217
seq2: B6Ng01-314H14.b_44_1141

seq1  GAATTCCTTCATAAATCAGCGGCCGGGTGAAAGGGTTGCGCGTTAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATAAATCAGCGGCCGGGTGAAAGGGTTGCGCGTTAGAAAG  50

seq1  GGCAGGACCGTGTGCGCGTATTAGAGCGCGCGGTTCCCAAATCCGGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGACCGTGTGCGCGTATTAGAGCGCGCGGTTCCCAAATCCGGGCTA  100

seq1  AACCCCTGGTGACACCGAAATTCATCAACCACCGCCAATGCCCCTGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGGTGACACCGAAATTCATCAACCACCGCCAATGCCCCTGCTCC  150

seq1  ATCTACGGAGGAGCCCGGGAGCCTGCATACCCTAGCTGCTTCACTCCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACGGAGGAGCCCGGGAGCCTGCATACCCTAGCTGCTTCACTCCGGG  200

seq1  GAAAAGAGAATCCCGGGAGGCAGGACTGGCTGAGGCGAGCTCCTGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAATCCCGGGAGGCAGGACTGGCTGAGGCGAGCTCCTGGAACA  250

seq1  CTGCACAGACCCGGGCTGCGGTGAGCCGCATTGCCAGTCCCGCTGGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGACCCGGGCTGCGGTGAGCCGCATTGCCAGTCCCGCTGGCAAA  300

seq1  GGGGGCTCTCCCCTCTGGGAAGGAGTTATTCTAACCTTTCTGTCCTCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTCTCCCCTCTGGGAAGGAGTTATTCTAACCTTTCTGTCCTCCGG  350

seq1  TCAGGGCTGGCCTCTCGGGAGCACTCGCCGCTCTCCCCCTCCTCCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTGGCCTCTCGGGAGCACTCGCCGCTCTCCCCCTCCTCCCCCCA  400

seq1  ACCTTCCAGGCCGGTGCTCTGAAGAGAGGTATCTAGCATCTAGGGCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAGGCCGGTGCTCTGAAGAGAGGTATCTAGCATCTAGGGCTTCA  450

seq1  GCAAGTCAGGACAAGGCGATCTAGGGATCTCAGGAAGGGAGGGAGGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAGGACAAGGCGATCTAGGGATCTCAGGAAGGGAGGGAGGCCCT  500

seq1  CTGGAGCCCGTTCCCTCACCCACAGGTCCCGCTGGGGGCGTAAAGTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCCGTTCCCTCACCCACAGGTCCCGCTGGGGGCGTAAAGTCAGC  550

seq1  GTACTCCACAGGCACTCTACAAATAACGTTCTTTTTGGAAGCAATGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCACAGGCACTCTACAAATAACGTTCTTTTTGGAAGCAATGCTAC  600

seq1  CTCAGGCCCATCGCGCTCAGCCCCGCTCCGCTCTTGCAAGTTCATGTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCCATCGCGCTCAGCCCCGCTCCGCTCTTGCAAGTTCATGTGCG  650

seq1  TTGGTCAAGCCCCAGAGTGCTAGAGAAAATGGTCCCTGAGGTTGCCCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAAGCCCCAGAGTGCTAGAGAAAATGGTCCCTGAGGTTGCCCGTT  700

seq1  GTGGCGGCCTTGCGGTGCTGCCTGGGGTGGGAAGCATGCATATTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGCCTTGCGGTGCTGCCTGGGGTGGGAAGCATGCATATTTCCTTC  750

seq1  CCAGGGGATCCAGCAGAAGAGCGGTTGCACTCCATGAGCCTCCCACGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATCCAGCAGAAGAGCGGTTGCACTCCATGAGCCTCCCACGCAG  800

seq1  GGTAGACAGACAACGTGTTCCTGCCTCCAGCTTACTTCCCAGCAGGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACAGACAACGTGTTCCTGCCTCCAGCTTACTTCCCAGCAGGAGGG  850

seq1  AAAAAAATACACACTGACACTGAGTGTCCCATTCAGGCTGGTACCTCTAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAAAATACACACTGACACTGAGTGTCCCATTCAGGCTGGTACCTCT-A  899

seq1  ACTTGCTTCACTTTGTCACAACCTAAGATGGGACCCGTCATCCCCATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCACTTTGTCACAACCTAAGATGGGACCCGTCATCCCCATTTC  949

seq1  ACAGAGGAG-AAAATCTCTGGCCTCC-GTCTGTA-GGAGATAGTT--AGG  995
      ||||||||| |||||||||||||||| ||||||| ||||||||||   ||
seq2  ACAGAGGAGAAAAATCTCTGGCCTCCGGTCTGTAGGGAGATAGTTTAGGG  999

seq1  GTCT-GTATCTCAAAGCTGCACTTG--CCAGCTACTCCCTTTT--GACCC  1040
      |||| ||||||||| ||||||||||  ||||||||||||||||  |||||
seq2  GTCTGGTATCTCAAGGCTGCACTTGGCCCAGCTACTCCCTTTTTGGACCC  1049

seq1  TTTTCTC----TTATGC-TTAAAATCACAATACTCA-GAGC-TTAGGTTA  1083
       ||| ||    |||||| |||||||||| ||||||| |||| ||||||||
seq2  CTTTTTCCTCTTTATGCTTTAAAATCAC-ATACTCAGGAGCTTTAGGTTA  1098

seq1: chr2_33638351_33639375
seq2: B6Ng01-314H14.g_64_1091 (reverse)

seq1  ACTGAG-CTGTACGCATAAAAGTAATGG-ATTGCATTGTATGTAAAACTG  48
      |||||| ||||||||||||||||||||| |||||| ||||||||||||||
seq2  ACTGAGCCTGTACGCATAAAAGTAATGGAATTGCA-TGTATGTAAAACTG  49

seq1  GACTCCAATAAATCAAATTAAAAAATATCCAGAATGGACAATTACCTTTG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAATAAATCAAATTAAAAAATATCCAGAATGGACAATTACCTTTG  99

seq1  CATATAAATGT-CCAGTCT-CCCCTCAAAAAAAAAAAAAAAGTCAAGAAA  146
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  CATATAAATGTCCCAGTCTCCCCCTCAAAAAAAAAAAAAAAGTCAAGAAA  149

seq1  GGATAGTCTCTAAAACATTGTTTTATGAACAAAGAGATTATGAGTGACAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTCTCTAAAACATTGTTTTATGAACAAAGAGATTATGAGTGACAT  199

seq1  TTATTTTCTTCCCATACTTTCATGTATTTTTTCAACTTTTGTTTTTAGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTCCCATACTTTCATGTATTTTTTCAACTTTTGTTTTTAGTA  249

seq1  GTGAACATGGGACTTTCGTAATTCAGAAAGGAAATGGTTTGCATCTGGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATGGGACTTTCGTAATTCAGAAAGGAAATGGTTTGCATCTGGTT  299

seq1  TTGATTTAACAAAGAGAAAAAAAAGAACAAAAATCTATCAATGAGCCATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAACAAAGAGAAAAAAAAGAACAAAAATCTATCAATGAGCCATG  349

seq1  TGTCTGGAAAAAGGCCTTTTATTTAGTTCTTTGTTTTCTTTTTTTTTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAAAAAGGCCTTTTATTTAGTTCTTTGTTTTCTTTTTTTTTTTT  399

seq1  TAAAAAAGATAAAATTTTGTCACTTTTTAAGTATGTGTATTTCTGCATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGATAAAATTTTGTCACTTTTTAAGTATGTGTATTTCTGCATGT  449

seq1  TGGTGTGTGGGTATGTGCACATGAGCACAGTGATCCAAGGAGGCCAGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTGGGTATGTGCACATGAGCACAGTGATCCAAGGAGGCCAGAGG  499

seq1  CAGTGGGTCCTGCTGAAGCCAAAGTTATAGGCAGCTGTAAGGTGCTGGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTCCTGCTGAAGCCAAAGTTATAGGCAGCTGTAAGGTGCTGGGA  549

seq1  ACTGAACCTGGTCCTCTGTAAGAGCAGTGTGCACTCTTAACAGCTGAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTGGTCCTCTGTAAGAGCAGTGTGCACTCTTAACAGCTGAGCC  599

seq1  TTCTCCCTAGGCCCCACTGCATTCGCTTCTTACAGGAGTGAAAGCCAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTAGGCCCCACTGCATTCGCTTCTTACAGGAGTGAAAGCCAAGC  649

seq1  TCATGTCCAGCAAACACATCAGCTCCATCAGGGCTGACGAAGCCATCTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCAGCAAACACATCAGCTCCATCAGGGCTGACGAAGCCATCTGA  699

seq1  GTCCAGCACCTATGATGCCTCTGCTCTCAACGGGGCCTCCGAGCAGTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCACCTATGATGCCTCTGCTCTCAACGGGGCCTCCGAGCAGTGAG  749

seq1  GGTGAGGACAGCTATCAGGAGAGCTGCCTGGTCCAAGAGCTCCATCTGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGACAGCTATCAGGAGAGCTGCCTGGTCCAAGAGCTCCATCTGTC  799

seq1  GCTAGGAAAACAAACCCTGGAGAAACAGGGCTACAGCTACAGTCTGGAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAAACAAACCCTGGAGAAACAGGGCTACAGCTACAGTCTGGAAC  849

seq1  CTAAGGACTCAAGTTTGGCTAACATTACCATCTAGACTGTGAACAGAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACTCAAGTTTGGCTAACATTACCATCTAGACTGTGAACAGAGGA  899

seq1  ACACCAGCCCAGACGCTCTGCCTCTGCCTGCCTGCCTGCCTACCTACCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCCCAGACGCTCTGCCTCTGCCTGCCTGCCTGCCTACCTACCCA  949

seq1  GAAGTCTGGCACAGTCTCAGGTGCTGAAGGCGCTATTTGGAAGAAGTGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGGCACAGTCTCAGGTGCTGAAGGCGCTATTTGGAAGAAGTGGG  999

seq1  TCACTCCCTGGAGGTGTGCCTTGGAATTC  1025
      |||||||||||||||||||||||||||||
seq2  TCACTCCCTGGAGGTGTGCCTTGGAATTC  1028