BAC Information

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BAC

Clone NameB6Ng01-314O08
Chromosome2 (Build37)
Map Location 49,184,816 - 49,342,326
singlet/doubletdoublet
Overlap geneEpc2
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
Downstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314O08.bB6Ng01-314O08.g
ACCGA105687GA105688
length1,157804
definitionB6Ng01-314O08.b B6Ng01-314O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,341,175 - 49,342,326)(49,184,816 - 49,185,619)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
aaaacaaaacaaaacaaaatttaaatcatattttaaaaatcagaagagca
atttttaaataaaaatatccaaagatactgaatggaaaaagaatgttatc
ctaaaaatatttcagtcacaaatatgtacactattatcactggcaaccaa
aatttctaaagaattccaataccataaatttctgagaaggtcttgctgct
cataataaaagtaaccaaagccttcaagagatttagagatcatcaaatag
taacataaattgctattcttatctgtagtatcctcagcaatgagcaaaca
atatcctacttctaaataacacagtctataggatccatgtttagaacagc
acatttaaagtgaaataatctagacatacacgttccctcctaggaaatga
cactctaggccctataaatcattctcacccttctaagtctttttttcttt
aaagttctttttatcatttctcaaattcatatacctttcaattataagcc
cctcggtctcacagacttttgtttatttgtttatttagggttatcatgct
cacagagcttctccatcatattggaataaagcaaggcaggttagctacct
cctcctactgtctcattttctaagcttcataaacacaatctctcattcta
tcagcatgtctctccccaagcatgctcccccagaatcacaatgcccacca
tttcctctgcatcctcctgcctgccttcacctctcaaaatcctggtcctc
tcctcaagacaaacaacttctactttccactcctcattatacaaacagct
ctaggctgttattaacagtttgttccttgattttatgaaaagcttcagtt
tattaacctttccatttctctatcagacccactcattgtcctcattcttt
atccaggtctggaatatactcttgagactattcatcttctctccattctt
ctgatattcccattttatgtaaaagcattgatcaatactcaataccgtat
gacattaagctctacttatgctttttcacatatatcaagtatttaataca
taataagccacacatatatggcaaaaaagcttccaagaatacagatgcac
taaggct

gaattcaatacatgtagtcacaagaagtaatccactgtacttttaatccc
cactaccaccaagaatgggtttttcagtctctttcttactttaaatgtac
aaaaaggaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaaggaaggaaggaaggaagggagagagagagagagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagag
agagaaagaaaggaagaaagggagggaggaaagaaggaaggaaggaagga
aagagagagagaaagggtgaaagaaaaagaatgaaatatataatgatgat
ggcatatagtgtggggcactgggctatgcacagacaggctgatctccagt
tgagctgaggtctaaatcccagaaatggtgacaattcaccttcatgacac
ggtaggcattccctcatgctcctggaactctggcccttgcctaagttacc
accccgcacagcccccacaagagaagcatggctagaagtcatgtagacaa
tggcccaagcttttgacctttaggctaaactcctccccagttacctagca
acagtgaagaccataaaaagggctgttcagccccacctcgctctctcact
cctttgttcccttacctctcacttctctctcctctttcctttctctttgt
cttctcctctcctctctccctcttactctctctctctctctctctctctc
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49341175_49342326
seq2: B6Ng01-314O08.b_46_1202 (reverse)

seq1  AGCC-TAGTGCACTTCTGTA-TCTT-GAAGCTTTTTTTGCATATATGTGT  47
      |||| |||||||  |||||| |||| |||||||||||  |||||||||||
seq2  AGCCTTAGTGCA--TCTGTATTCTTGGAAGCTTTTTTGCCATATATGTGT  48

seq1  -GCT--ATATGTA-TAAATACTTGAATATATGTG-AAAAGCATAAGTAGA  92
       |||   |||||| |||||||||| ||||||||| |||||||||||||||
seq2  GGCTTATTATGTATTAAATACTTG-ATATATGTGAAAAAGCATAAGTAGA  97

seq1  GCTTAATGTCATACGGTATTGAGTTATTGATCAATGCTTTTACATAAAAT  142
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTTAATGTCATACGGTATTGAG-TATTGATCAATGCTTTTACATAAAAT  146

seq1  -GGAATATCAGAAGAATGGAGAGAAGATGAATAGTCTCAAGAGTATATTC  191
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATATCAGAAGAATGGAGAGAAGATGAATAGTCTCAAGAGTATATTC  196

seq1  CAGACCTGGATAAAGAATGAGGACAATGAGTGGGTCTGATAGAGAAATGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGGATAAAGAATGAGGACAATGAGTGGGTCTGATAGAGAAATGG  246

seq1  AAAGGTTAATAAACTGAAGCTTTTCATAAAATCAAGGAACAAACTGTTAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTAATAAACTGAAGCTTTTCATAAAATCAAGGAACAAACTGTTAA  296

seq1  TAACAGCCTAGAGCTGTTTGTATAATGAGGAGTGGAAAGTAGAAGTTGTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTAGAGCTGTTTGTATAATGAGGAGTGGAAAGTAGAAGTTGTT  346

seq1  TGTCTTGAGGAGAGGACCAGGATTTTGAGAGGTGAAGGCAGGCAGGAGGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAGGAGAGGACCAGGATTTTGAGAGGTGAAGGCAGGCAGGAGGA  396

seq1  TGCAGAGGAAATGGTGGGCATTGTGATTCTGGGGGAGCATGCTTGGGGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGAAATGGTGGGCATTGTGATTCTGGGGGAGCATGCTTGGGGAG  446

seq1  AGACATGCTGATAGAATGAGAGATTGTGTTTATGAAGCTTAGAAAATGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCTGATAGAATGAGAGATTGTGTTTATGAAGCTTAGAAAATGAG  496

seq1  ACAGTAGGAGGAGGTAGCTAACCTGCCTTGCTTTATTCCAATATGATGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGAGGAGGTAGCTAACCTGCCTTGCTTTATTCCAATATGATGGA  546

seq1  GAAGCTCTGTGAGCATGATAACCCTAAATAAACAAATAAACAAAAGTCTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTGTGAGCATGATAACCCTAAATAAACAAATAAACAAAAGTCTG  596

seq1  TGAGACCGAGGGGCTTATAATTGAAAGGTATATGAATTTGAGAAATGATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCGAGGGGCTTATAATTGAAAGGTATATGAATTTGAGAAATGATA  646

seq1  AAAAGAACTTTAAAGAAAAAAAGACTTAGAAGGGTGAGAATGATTTATAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTTTAAAGAAAAAAAGACTTAGAAGGGTGAGAATGATTTATAG  696

seq1  GGCCTAGAGTGTCATTTCCTAGGAGGGAACGTGTATGTCTAGATTATTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAGTGTCATTTCCTAGGAGGGAACGTGTATGTCTAGATTATTTC  746

seq1  ACTTTAAATGTGCTGTTCTAAACATGGATCCTATAGACTGTGTTATTTAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATGTGCTGTTCTAAACATGGATCCTATAGACTGTGTTATTTAG  796

seq1  AAGTAGGATATTGTTTGCTCATTGCTGAGGATACTACAGATAAGAATAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGATATTGTTTGCTCATTGCTGAGGATACTACAGATAAGAATAGC  846

seq1  AATTTATGTTACTATTTGATGATCTCTAAATCTCTTGAAGGCTTTGGTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTTACTATTTGATGATCTCTAAATCTCTTGAAGGCTTTGGTTA  896

seq1  CTTTTATTATGAGCAGCAAGACCTTCTCAGAAATTTATGGTATTGGAATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTATGAGCAGCAAGACCTTCTCAGAAATTTATGGTATTGGAATT  946

seq1  CTTTAGAAATTTTGGTTGCCAGTGATAATAGTGTACATATTTGTGACTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAATTTTGGTTGCCAGTGATAATAGTGTACATATTTGTGACTGA  996

seq1  AATATTTTTAGGATAACATTCTTTTTCCATTCAGTATCTTTGGATATTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTAGGATAACATTCTTTTTCCATTCAGTATCTTTGGATATTTT  1046

seq1  TATTTAAAAATTGCTCTTCTGATTTTTAAAATATGATTTAAATTTTGTTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAATTGCTCTTCTGATTTTTAAAATATGATTTAAATTTTGTTT  1096

seq1  TGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  1146

seq1  TCCTGGAATTC  1152
      |||||||||||
seq2  TCCTGGAATTC  1157


seq1: chr2_49184816_49185619
seq2: B6Ng01-314O08.g_66_869

seq1  GAATTCAATACATGTAGTCACAAGAAGTAATCCACTGTACTTTTAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACATGTAGTCACAAGAAGTAATCCACTGTACTTTTAATCCC  50

seq1  CACTACCACCAAGAATGGGTTTTTCAGTCTCTTTCTTACTTTAAATGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCACCAAGAATGGGTTTTTCAGTCTCTTTCTTACTTTAAATGTAC  100

seq1  AAAAAGGAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  150

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  200

seq1  AGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGGAGAGAGAGAGAGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGGAGAGAGAGAGAGAGAAAG  250

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  300

seq1  AGAGAAAGAAAGGAAGAAAGGGAGGGAGGAAAGAAGGAAGGAAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAGGAAGAAAGGGAGGGAGGAAAGAAGGAAGGAAGGAAGGA  350

seq1  AAGAGAGAGAGAAAGGGTGAAAGAAAAAGAATGAAATATATAATGATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGAAAGGGTGAAAGAAAAAGAATGAAATATATAATGATGAT  400

seq1  GGCATATAGTGTGGGGCACTGGGCTATGCACAGACAGGCTGATCTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAGTGTGGGGCACTGGGCTATGCACAGACAGGCTGATCTCCAGT  450

seq1  TGAGCTGAGGTCTAAATCCCAGAAATGGTGACAATTCACCTTCATGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGAGGTCTAAATCCCAGAAATGGTGACAATTCACCTTCATGACAC  500

seq1  GGTAGGCATTCCCTCATGCTCCTGGAACTCTGGCCCTTGCCTAAGTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCATTCCCTCATGCTCCTGGAACTCTGGCCCTTGCCTAAGTTACC  550

seq1  ACCCCGCACAGCCCCCACAAGAGAAGCATGGCTAGAAGTCATGTAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGCACAGCCCCCACAAGAGAAGCATGGCTAGAAGTCATGTAGACAA  600

seq1  TGGCCCAAGCTTTTGACCTTTAGGCTAAACTCCTCCCCAGTTACCTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAAGCTTTTGACCTTTAGGCTAAACTCCTCCCCAGTTACCTAGCA  650

seq1  ACAGTGAAGACCATAAAAAGGGCTGTTCAGCCCCACCTCGCTCTCTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAGACCATAAAAAGGGCTGTTCAGCCCCACCTCGCTCTCTCACT  700

seq1  CCTTTGTTCCCTTACCTCTCACTTCTCTCTCCTCTTTCCTTTCTCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCCCTTACCTCTCACTTCTCTCTCCTCTTTCCTTTCTCTTTGT  750

seq1  CTTCTCCTCTCCTCTCTCCCTCTTACTCTCTCTCTCTCTCTCTCTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCTCCTCTCTCCCTCTTACTCTCTCTCTCTCTCTCTCTCTCTC  800

seq1  TCTC  804
      ||||
seq2  TCTC  804


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