BAC Information

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BAC

Clone NameB6Ng01-315A20
Chromosome2 (Build37)
Map Location 114,232,117 - 114,417,958
singlet/doubletdoublet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315A20.bB6Ng01-315A20.g
ACCGA105805GA105806
length9001,026
definitionB6Ng01-315A20.b B6Ng01-315A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,417,063 - 114,417,958)(114,232,117 - 114,233,149)
sequence
gaattctcccacgtccctctccctatcccagctatgagctgggcaacatc
cttgttttatctccttagctcctcactctctactctttagacttggatga
aaatctgtatcggctctccaatgagaatgacgcctgtctggttgtcactc
tttcagactgattccttgtcttctttggtttctggcttttacatcaataa
ttatgattatttataacattaaatcataaagttccacttatcatgtaagc
catgtcatatagtaactcactacatatatgtggtatatatgcacatacat
atatttatagaacttatacatgtatacatatagacatgtaaatattccat
tttttctagaaaaacttaaaatggtctgatcttaatatttgatgttggtt
gtggcaagttatatgactaatagaagattacactgaagaagaaatagttg
aatttgccttaaaaaactccttaaacaatttggtctattttgtttcttta
tctagtccattggtttcctatggctgtgaccctttaatccagttcctcat
gttgtggtgacccccaaccatacaagtactttcattgctgcgtcattgtg
attataattttgctactgttataaatcataatgtaaatacgtatgttttc
tgaaggtcttaagggaccccagtgagaagtatcatttgacccccaaaaga
gttgcaacccacatgttaaacgctgctggtctagtcactgccccgttgac
caacctaggtatccagctaatctcattcacttgatgctacatattgaatt
atgctgcattagctttctatggcctattatcatactgcctttgtaacttc
tttattcttccactgtcaaactgtgtgtgttgtgtgagtgtgcggtgtgt

gaattcaaaagtaaactgtggcatttaactagatagctttgaaggttccc
tccagtgacagtgttctaagattttgtaactactattgacagtaatatga
agaaatctgatgttttgaaaaattcagacccttatattctggcagaaggc
tagtcacagttcacattactaatataatttaaatatgggcaattcataaa
ataattagtgatattactcatcattctgtgaagccagaaatagttattga
atgtgaatatcatttagaagcaaatattaatcttatgaatattttgggct
tgtttacagtgaggtaaagagtgaaaattatcaagaaaagtacgaattcc
tttaaaatttttgttaccctctccaattacaaagaagaggatatcttgtt
cgatgtaaaagttatttgtcctgcccaaaggcaatttgcatatgacttac
acaccagtggactgaactctcaaatcacataacacaagacactttaactt
cttcatatactgaagcattttgaagcatcttaatataacatttccctaca
ataaaagtgttatatatcgctcttacaattacagagctcaactaaggagt
atgatcctgaaaattttcgaacaataagaatccaatcatgtacaagattc
aagcactcgtcgacaggttaacatttattaaaacacatgggtgggcatta
gttcttcactaatcagtccaaatatctaccgagcgcttaggttccagcta
tacttttgctctcctgaatatctttactgaaaatggcacacctttcagat
aataacctggacatccagttacccccttcccatattttgttcccatcagc
accacccactctgtcagcatctctttctccacctgtgtctttctttccag
ttgtatatttttcttcaaagctctgcctgccttcactgagcataggatta
gcaccagactgcagcgagcatttgttcatctggagagcacatttgcacct
cccccatgatacagcattaatgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114417063_114417958
seq2: B6Ng01-315A20.b_46_945 (reverse)

seq1  ACACA-CACACACTCACAC-ACACACACAGTTTGACAGTGGAAGAATAAA  48
      ||||| | ||||||||||| ||||||||||||||||||||||||||||||
seq2  ACACACCGCACACTCACACAACACACACAGTTTGACAGTGGAAGAATAAA  50

seq1  G-AGTTACAAAGGCAGTATGATAATAGGCCATAGAAAGCTAATGCAGCAT  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACAAAGGCAGTATGATAATAGGCCATAGAAAGCTAATGCAGCAT  100

seq1  -ATTCAATATGTAGCATCAAGTGAATGAGATTAGCTGGATACCTAGGTTG  146
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATATGTAGCATCAAGTGAATGAGATTAGCTGGATACCTAGGTTG  150

seq1  GTCAACGGGGCAGTGACTAGACCAGCAGCGTTTAACATGTGGGTTGCAAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACGGGGCAGTGACTAGACCAGCAGCGTTTAACATGTGGGTTGCAAC  200

seq1  TCTTTTGGGGGTCAAATGATACTTCTCACTGGGGTCCCTTAAGACCTTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGGGGTCAAATGATACTTCTCACTGGGGTCCCTTAAGACCTTCA  250

seq1  GAAAACATACGTATTTACATTATGATTTATAACAGTAGCAAAATTATAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATACGTATTTACATTATGATTTATAACAGTAGCAAAATTATAAT  300

seq1  CACAATGACGCAGCAATGAAAGTACTTGTATGGTTGGGGGTCACCACAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACGCAGCAATGAAAGTACTTGTATGGTTGGGGGTCACCACAAC  350

seq1  ATGAGGAACTGGATTAAAGGGTCACAGCCATAGGAAACCAATGGACTAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACTGGATTAAAGGGTCACAGCCATAGGAAACCAATGGACTAGA  400

seq1  TAAAGAAACAAAATAGACCAAATTGTTTAAGGAGTTTTTTAAGGCAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACAAAATAGACCAAATTGTTTAAGGAGTTTTTTAAGGCAAATT  450

seq1  CAACTATTTCTTCTTCAGTGTAATCTTCTATTAGTCATATAACTTGCCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTTCTTCTTCAGTGTAATCTTCTATTAGTCATATAACTTGCCAC  500

seq1  AACCAACATCAAATATTAAGATCAGACCATTTTAAGTTTTTCTAGAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACATCAAATATTAAGATCAGACCATTTTAAGTTTTTCTAGAAAAA  550

seq1  ATGGAATATTTACATGTCTATATGTATACATGTATAAGTTCTATAAATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATTTACATGTCTATATGTATACATGTATAAGTTCTATAAATAT  600

seq1  ATGTATGTGCATATATACCACATATATGTAGTGAGTTACTATATGACATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGCATATATACCACATATATGTAGTGAGTTACTATATGACATG  650

seq1  GCTTACATGATAAGTGGAACTTTATGATTTAATGTTATAAATAATCATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATGATAAGTGGAACTTTATGATTTAATGTTATAAATAATCATAA  700

seq1  TTATTGATGTAAAAGCCAGAAACCAAAGAAGACAAGGAATCAGTCTGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATGTAAAAGCCAGAAACCAAAGAAGACAAGGAATCAGTCTGAAA  750

seq1  GAGTGACAACCAGACAGGCGTCATTCTCATTGGAGAGCCGATACAGATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAACCAGACAGGCGTCATTCTCATTGGAGAGCCGATACAGATTT  800

seq1  TCATCCAAGTCTAAAGAGTAGAGAGTGAGGAGCTAAGGAGATAAAACAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAGTCTAAAGAGTAGAGAGTGAGGAGCTAAGGAGATAAAACAAG  850

seq1  GATGTTGCCCAGCTCATAGCTGGGATAGGGAGAGGGACGTGGGAGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGCCCAGCTCATAGCTGGGATAGGGAGAGGGACGTGGGAGAATTC  900

seq1: chr2_114232117_114233149
seq2: B6Ng01-315A20.g_66_1091

seq1  GAATTCAAAAGTAAACTGTGGCATTTAACTAGATAGCTTTGAAGGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTAAACTGTGGCATTTAACTAGATAGCTTTGAAGGTTCCC  50

seq1  TCCAGTGACAGTGTTCTAAGATTTTGTAACTACTATTGACAGTAATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGACAGTGTTCTAAGATTTTGTAACTACTATTGACAGTAATATGA  100

seq1  AGAAATCTGATGTTTTGAAAAATTCAGACCCTTATATTCTGGCAGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGATGTTTTGAAAAATTCAGACCCTTATATTCTGGCAGAAGGC  150

seq1  TAGTCACAGTTCACATTACTAATATAATTTAAATATGGGCAATTCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGTTCACATTACTAATATAATTTAAATATGGGCAATTCATAAA  200

seq1  ATAATTAGTGATATTACTCATCATTCTGTGAAGCCAGAAATAGTTATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTGATATTACTCATCATTCTGTGAAGCCAGAAATAGTTATTGA  250

seq1  ATGTGAATATCATTTAGAAGCAAATATTAATCTTATGAATATTTTGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATATCATTTAGAAGCAAATATTAATCTTATGAATATTTTGGGCT  300

seq1  TGTTTACAGTGAGGTAAAGAGTGAAAATTATCAAGAAAAGTACGAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAGTGAGGTAAAGAGTGAAAATTATCAAGAAAAGTACGAATTCC  350

seq1  TTTAAAATTTTTGTTACCCTCTCCAATTACAAAGAAGAGGATATCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTTTGTTACCCTCTCCAATTACAAAGAAGAGGATATCTTGTT  400

seq1  CGATGTAAAAGTTATTTGTCCTGCCCAAAGGCAATTTGCATATGACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAAAAGTTATTTGTCCTGCCCAAAGGCAATTTGCATATGACTTAC  450

seq1  ACACCAGTGGACTGAACTCTCAAATCACATAACACAAGACACTTTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTGGACTGAACTCTCAAATCACATAACACAAGACACTTTAACTT  500

seq1  CTTCATATACTGAAGCATTTTGAAGCATCTTAATATAACATTTCCCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATACTGAAGCATTTTGAAGCATCTTAATATAACATTTCCCTACA  550

seq1  ATAAAAGTGTTATATATCGCTCTTACAATTACAGAGCTCAACTAAGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTGTTATATATCGCTCTTACAATTACAGAGCTCAACTAAGGAGT  600

seq1  ATGATCCTGAAAATTTTCGAACAATAAGAATCCAATCATGTACAAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTGAAAATTTTCGAACAATAAGAATCCAATCATGTACAAGATTC  650

seq1  AAGCACTCGTCGACAGGTTAACATTTATTAAAACACATGGGTGGGCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCGTCGACAGGTTAACATTTATTAAAACACATGGGTGGGCATTA  700

seq1  GTTCTTCACTAATCAGTCCAAATATCTACCGAGCGCTTAGGTTCCAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCACTAATCAGTCCAAATATCTACCGAGCGCTTAGGTTCCAGCTA  750

seq1  TACTTTTGCTCTCCTGAATATCTTTACTGAAAATGGCACACCTTTCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGCTCTCCTGAATATCTTTACTGAAAATGGCACACCTTTCAGAT  800

seq1  AATAACCTGGACATCCAGTTACCCCCTTCCCATATTTTGTTCCCATCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTGGACATCCAGTTACCCCCTTCCCATATTTTGTTCCCATCAGC  850

seq1  ACCACCCACTCTGTCAGCATCTCTTTCTCCACCTGTGTCTTTCTTTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACTCTGTCAGCATCTCTTTCTCCACCTGTGTCTTTCTTTCCAG  900

seq1  TTGTATATTTTTCTTCAAAGCTCTGCCTGCCTTTCACTGAGCAATAGGAT  950
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TTGTATATTTTTCTTCAAAGCTCTGCCTGCC-TTCACTGAGC-ATAGGAT  948

seq1  TAGCACCAGACTGCAGCGAGCAATTTGTTCATCCTTGGAGAGCACATTTG  1000
      ||||||||||||||||||||| |||||||||||  |||||||||||||||
seq2  TAGCACCAGACTGCAGCGAGC-ATTTGTTCATC--TGGAGAGCACATTTG  995

seq1  CA-CTCCCCCATGATACAGGCATTTAAATGATTT  1033
      || ||||||||||||||| |||||  ||||||||
seq2  CACCTCCCCCATGATACA-GCATT--AATGATTT  1026