BAC Information

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BAC

Clone NameB6Ng01-315J05
Chromosome2 (Build37)
Map Location 75,214,823 - 75,215,906
singlet/doubletsinglet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315J05.bB6Ng01-315J05.g
ACCGA106192GA106193
length4471,076
definitionB6Ng01-315J05.b B6Ng01-315J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cttctttatgtcctctaccatcatcatgagatatgcttttaaatccaggt
ctaccttttcaggtgtgttagggtgtcctggattgggcgaagtgggcgtt
ctgggttctgatgatggtgagtggtcctggcttctgttagtaggattctt
acgtttacctttcgccatctggcaatctctggagttagttgttatagttg
tctttgttaaaagattgttcctctgttgattttgttaccctctatcagca
ggcgtgggagacaagctctcttctctgagtttcagtggtcagagcagtct
ctgtaggcaagctctcctctctcagggaaggtgtacagttatctggtgtt
tggacctcctcctggctgaaggtgaaggcccaaaacaggatctttcccag
aagctgtgttgctttggccaggaaggtggccagttgtctggagtcga
gaattcaatcttcagtagagatgggaaattgagccctatttttcatagaa
ttattctttacttttgtgtcttctgtggttgagagtgaaccgtcttatca
gctgggccaataagatcattaatggaaaacagtgctgtgcaccagtggct
ctttactccttgatcaatagttatttacttctaaggggtcacagcttggt
taatatagctgaataattttattgatagataacataacaatgaaaaataa
agtttaaaatggaagacgaatgaacacagcactttctccaggcatgaata
ttattatttgaaaaccgtaatagccgctgcaatgttgaaagggcagacaa
caaaagcactgaataattgttctaggaccataatcagacttccattattg
acctctgttaatattccactgtaactgtctgctaaattggttccttgggg
cttgaaatatacagtgatgttatgagttcctatcgtaaattgccacacag
taaagtagcaagtctctgaaatagtgttggccctagtttgatcaatactc
aattcaaagcagtgcaatgggcaactgtttccatagaaacattgatgtca
cagaggttgaacagcggctgttacaacaaatcatttcctttgagcagttg
taattgactatatgtacagtttgctgtcacttgagaccatttacatcaag
caagtaacagaaccacattagttattctaggagtaagagggttagctctt
ccctttgtgaccttacaaatacctaggaggatgtcgccatagaaaccggc
agaataactgatgaacatgggggtccaatgctacctggatgcagtagcct
tttgggagctgaaggtagtctgaagtttcccattgctacgttaacacagg
cacctgctacccatagtagtggcctgactgctttctctcagacaacacca
ggatgcagacatctaattccatttgcacttcatttctgctctgcccttag
tttccacaggcgtctgctgctagctgcacatgtgccacatttgtaaactc
tcacctgctcctctagcttggctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75214823_75215906
seq2: B6Ng01-315J05.g_68_1143 (reverse)

seq1  CAGAGCCAAGCTAGA-GAGCAGTTGAGAGTTTACCAAATGT-GCACATGT  48
      ||||||||||||||| |||||| |||||||||| ||||||| ||||||||
seq2  CAGAGCCAAGCTAGAGGAGCAGGTGAGAGTTTA-CAAATGTGGCACATGT  49

seq1  GCAGCCTTAGCAGCCAGACGCCTGTGGAAACTTAAAGGCAAGGAGCAGGA  98
      |||||  |||||| ||||||||||||||||| ||| ||||  ||||| ||
seq2  GCAGC--TAGCAG-CAGACGCCTGTGGAAAC-TAAGGGCA--GAGCA-GA  92

seq1  AATGAAGTGCAAATGGAATTAAGATGTCTGCATCCTGGTGTTGTCTGAGA  148
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATGAAGTGCAAATGGAATT-AGATGTCTGCATCCTGGTGTTGTCTGAGA  141

seq1  GAAAGCAGTCAGGCCACTACTATGGGTAGCAGGTGCCTGTGTTAACGTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGTCAGGCCACTACTATGGGTAGCAGGTGCCTGTGTTAACGTAG  191

seq1  CAATGGGAAACTTCAGACTACCTTTCAGCTCCCAAAAGGCTACTGCATCC  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAATGGGAAACTTCAGACTACC-TTCAGCTCCCAAAAGGCTACTGCATCC  240

seq1  AGGTAGCATTGGACCCCCATGTTCATCAGTTATTCTGCCGGTTTCTATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCATTGGACCCCCATGTTCATCAGTTATTCTGCCGGTTTCTATGG  290

seq1  CGACATCCTCCTAGGTATTTGTAAGGTCACAAAGGGAAGAGCTAACCCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCCTCCTAGGTATTTGTAAGGTCACAAAGGGAAGAGCTAACCCTC  340

seq1  TTACTCCTAGAATAACTAATGTGGTTCTGTTACTTGCTTGATGTAAATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTAGAATAACTAATGTGGTTCTGTTACTTGCTTGATGTAAATGG  390

seq1  TCTCAAGTGACAGCAAACTGTACATATAGTCAATTACAACTGCTCAAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGACAGCAAACTGTACATATAGTCAATTACAACTGCTCAAAGG  440

seq1  AAATGATTTGTTGTAACAGCCGCTGTTCAACCTCTGTGACATCAATGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTGTTGTAACAGCCGCTGTTCAACCTCTGTGACATCAATGTTT  490

seq1  CTATGGAAACAGTTGCCCATTGCACTGCTTTGAATTGAGTATTGATCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAACAGTTGCCCATTGCACTGCTTTGAATTGAGTATTGATCAAA  540

seq1  CTAGGGCCAACACTATTTCAGAGACTTGCTACTTTACTGTGTGGCAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCCAACACTATTTCAGAGACTTGCTACTTTACTGTGTGGCAATTT  590

seq1  ACGATAGGAACTCATAACATCACTGTATATTTCAAGCCCCAAGGAACCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAGGAACTCATAACATCACTGTATATTTCAAGCCCCAAGGAACCAA  640

seq1  TTTAGCAGACAGTTACAGTGGAATATTAACAGAGGTCAATAATGGAAGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGACAGTTACAGTGGAATATTAACAGAGGTCAATAATGGAAGTC  690

seq1  TGATTATGGTCCTAGAACAATTATTCAGTGCTTTTGTTGTCTGCCCTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGGTCCTAGAACAATTATTCAGTGCTTTTGTTGTCTGCCCTTTC  740

seq1  AACATTGCAGCGGCTATTACGGTTTTCAAATAATAATATTCATGCCTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCAGCGGCTATTACGGTTTTCAAATAATAATATTCATGCCTGGA  790

seq1  GAAAGTGCTGTGTTCATTCGTCTTCCATTTTAAACTTTATTTTTCATTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCTGTGTTCATTCGTCTTCCATTTTAAACTTTATTTTTCATTGT  840

seq1  TATGTTATCTATCAATAAAATTATTCAGCTATATTAACCAAGCTGTGACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATCTATCAATAAAATTATTCAGCTATATTAACCAAGCTGTGACC  890

seq1  CCTTAGAAGTAAATAACTATTGATCAAGGAGTAAAGAGCCACTGGTGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAGTAAATAACTATTGATCAAGGAGTAAAGAGCCACTGGTGCAC  940

seq1  AGCACTGTTTTCCATTAATGATCTTATTGGCCCAGCTGATAAGACGGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTTTTCCATTAATGATCTTATTGGCCCAGCTGATAAGACGGTTC  990

seq1  ACTCTCAACCACAGAAGACACAAAAGTAAAGAATAATTCTATGAAAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAACCACAGAAGACACAAAAGTAAAGAATAATTCTATGAAAAATA  1040

seq1  GGGCTCAATTTCCCATCTCTACTGAAGATTGAATTC  1084
      ||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAATTTCCCATCTCTACTGAAGATTGAATTC  1076