BAC Information

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BAC

Clone NameB6Ng01-315N21
Chromosome2 (Build37)
Map Location 156,907,398 - 157,039,136
singlet/doubletdoublet
Overlap gene9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik
Upstream geneCpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1
Downstream geneRpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315N21.bB6Ng01-315N21.g
ACCGA106403GA106404
length432995
definitionB6Ng01-315N21.b B6Ng01-315N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,038,699 - 157,039,136)(156,907,398 - 156,908,393)
sequence
tatattaacaaattgtgatgctattcacacacatctcacaggctgcagtg
ctgtctaagcagctatgctgtagagagcagaacttggcatgagggtgctt
tatagtcatctaagacaaccatcagagaattgttttcagaacttcggtgg
gtcaacctttatgtaactgcacagttctgcaggttgaatgttccaagaat
tattgctcccatttaagaatatttgtacaaatctgaatatagggcgggct
ggtgagatggctcagtgggtaagagcacctgactgttcttccgaaggtcc
ggagttcaaaacccagcaaccacatggtggctcacaaccatccgtaatga
gatctgattccctcttctggagtgtctgaagacagctacagtgtacttac
atataataaataaataaatctttaaaaaaata
gaattctctcaccagccctgccacctaaactgtagaacaactctctgaag
gcaccagggtttgcctgccccaatttttttttttttcacacagtagtggg
ttactggaatgcacagccaaagtcagacatccggtcaaggaggaagcctt
cgatggtggctttagtggcggggatggtgacccaaatggaagaccagctt
ctgctttcccatcaagctaccaaactgaccaacaggatggaaaccaagta
gaaactaactcactaaagtgaagattgttttcatcatacaaatcatgaaa
gaaataagccactggctggtaaatggaacccatgtgaacggggttattgg
ggaaccctctcgaggaagtgacctgtatgctgagttagccaaagggcctg
ggaagagaatctggggcagactgaagagcaagggcaatgtccctggagga
ggagagagtgtgacagatgttcagggaggggtgattagtgtggctggaaa
cccctgggagataaaggaacggaaagcacggattggattgttcccagtgc
agtgacaaacactggaacctctaagcagggagtcacagcatctaatttac
atccggaagtagatctctctcggctgacaagaacagcttaggggttgagg
aacatgactgtgggggctaagcgggctctgatgcatctagaagccataga
aaaaggatacattctgctttaaagagccagacactgttggccggaagcga
ggactcgagtgagtgatgtcaagttcatctcctgtcacctgctttagaga
cagagcagtgacagaacagccactgtttgcttcagcaggaaggacaggct
tggaggtatggaagggtaagagagccttcagttcatagaggacttgggtc
agtttgaagcatccgtggagatgtccagagagaccagaggaggatgttca
gccaggtgccatacctacctgagttcagaggatagcaggatgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_157038699_157039136
seq2: B6Ng01-315N21.b_46_483 (reverse)

seq1  TATTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTG  50

seq1  TCTTCAGACACTCCAGAAGAGGGAATCAGATCTCATTACGGATGGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACTCCAGAAGAGGGAATCAGATCTCATTACGGATGGTTGTG  100

seq1  AGCCACCATGTGGTTGCTGGGTTTTGAACTCCGGACCTTCGGAAGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGTTTTGAACTCCGGACCTTCGGAAGAACAG  150

seq1  TCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGCCCTATATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGCCCTATATTCAG  200

seq1  ATTTGTACAAATATTCTTAAATGGGAGCAATAATTCTTGGAACATTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACAAATATTCTTAAATGGGAGCAATAATTCTTGGAACATTCAAC  250

seq1  CTGCAGAACTGTGCAGTTACATAAAGGTTGACCCACCGAAGTTCTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAACTGTGCAGTTACATAAAGGTTGACCCACCGAAGTTCTGAAAA  300

seq1  CAATTCTCTGATGGTTGTCTTAGATGACTATAAAGCACCCTCATGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCTGATGGTTGTCTTAGATGACTATAAAGCACCCTCATGCCAAG  350

seq1  TTCTGCTCTCTACAGCATAGCTGCTTAGACAGCACTGCAGCCTGTGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTCTACAGCATAGCTGCTTAGACAGCACTGCAGCCTGTGAGAT  400

seq1  GTGTGTGAATAGCATCACAATTTGTTAATATAGAATTC  438
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAATAGCATCACAATTTGTTAATATAGAATTC  438

seq1: chr2_156907398_156908393
seq2: B6Ng01-315N21.g_65_1059

seq1  GAATTCTCTCACCAGCCCTGCCACCTAAACTGTAGAACAACTCTCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACCAGCCCTGCCACCTAAACTGTAGAACAACTCTCTGAAG  50

seq1  GCACCAGGGTTTGCCTGCCCCAATTTTTTTTTTTTTCACACAGTAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGGTTTGCCTGCCCCAATTTTTTTTTTTTTCACACAGTAGTGGG  100

seq1  TTACTGGAATGCACAGCCAAAGTCAGACATCCGGTCAAGGAGGAAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGAATGCACAGCCAAAGTCAGACATCCGGTCAAGGAGGAAGCCTT  150

seq1  CGATGGTGGCTTTAGTGGCGGGGATGGTGACCCAAATGGAAGACCAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTGGCTTTAGTGGCGGGGATGGTGACCCAAATGGAAGACCAGCTT  200

seq1  CTGCTTTCCCATCAAGCTACCAAACTGACCAACAGGATGGAAACCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCCATCAAGCTACCAAACTGACCAACAGGATGGAAACCAAGTA  250

seq1  GAAACTAACTCACTAAAGTGAAGATTGTTTTCATCATACAAATCATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAACTCACTAAAGTGAAGATTGTTTTCATCATACAAATCATGAAA  300

seq1  GAAATAAGCCACTGGCTGGTAAATGGAACCCATGTGAACGGGGTTATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCCACTGGCTGGTAAATGGAACCCATGTGAACGGGGTTATTGG  350

seq1  GGAACCCTCTCGAGGAAGTGACCTGTATGCTGAGTTAGCCAAAGGGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTCTCGAGGAAGTGACCTGTATGCTGAGTTAGCCAAAGGGCCTG  400

seq1  GGAAGAGAATCTGGGGCAGACTGAAGAGCAAGGGCAATGTCCCTGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAATCTGGGGCAGACTGAAGAGCAAGGGCAATGTCCCTGGAGGA  450

seq1  GGAGAGAGTGTGACAGATGTTCAGGGAGGGGTGATTAGTGTGGCTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGTGTGACAGATGTTCAGGGAGGGGTGATTAGTGTGGCTGGAAA  500

seq1  CCCCTGGGAGATAAAGGAACGGAAAGCACGGATTGGATTGTTCCCAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGAGATAAAGGAACGGAAAGCACGGATTGGATTGTTCCCAGTGC  550

seq1  AGTGACAAACACTGGAACCTCTAAGCAGGGAGTCACAGCATCTAATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAACACTGGAACCTCTAAGCAGGGAGTCACAGCATCTAATTTAC  600

seq1  ATCCGGAAGTAGATCTCTCTCGGCTGACAAGAACAGCTTAGGGGTTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAAGTAGATCTCTCTCGGCTGACAAGAACAGCTTAGGGGTTGAGG  650

seq1  AACATGACTGTGGGGGCTAAGCGGGCTCTGATGCATCTAGAAGCCATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACTGTGGGGGCTAAGCGGGCTCTGATGCATCTAGAAGCCATAGA  700

seq1  AAAAGGATACATTCTGCTTTAAAGAGCCAGACACTGTTGGCCGGAAGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATACATTCTGCTTTAAAGAGCCAGACACTGTTGGCCGGAAGCGA  750

seq1  GGACTCGAGTGAGTGATGTCAAGTTCATCTCCTGTCACCTGCTTTAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCGAGTGAGTGATGTCAAGTTCATCTCCTGTCACCTGCTTTAGAGA  800

seq1  CAGAGCAGTGACAGAACAGCCACTGTTTGCTTCAGCAGGAAGGACAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGTGACAGAACAGCCACTGTTTGCTTCAGCAGGAAGGACAGGCT  850

seq1  TGGAGGTATGGAAGGGTAAGAGAGCC-TCAGTTCATAGAGGAC-TGGGTC  898
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  TGGAGGTATGGAAGGGTAAGAGAGCCTTCAGTTCATAGAGGACTTGGGTC  900

seq1  AGTTTGAAGCATCCGTGGAGATGTCCAAAGAGAGACCCAGAGGGAGGATG  948
      ||||||||||||||||||||||||||| |||||   ||||| ||||||||
seq2  AGTTTGAAGCATCCGTGGAGATGTCCAGAGAGA---CCAGA-GGAGGATG  946

seq1  -TCAGGCAGGTGCCATAACTACCTGAGTTCAGAGGATAGCAGGATGGCC  996
       |||| ||||||||||| ||||||||||||||||||||||||||||| |
seq2  TTCAGCCAGGTGCCATACCTACCTGAGTTCAGAGGATAGCAGGATGGGC  995