BAC Information

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BAC

Clone NameB6Ng01-315P14
Chromosome2 (Build37)7 (Build37)
Map Location 118,879,045 - 118,879,65473,488,389 - 73,489,549
singlet/doubletsingletsinglet
Overlap geneCasc5
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2
Downstream geneRad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315P14.bB6Ng01-315P14.g
ACCGA106485GA106486
length1,0051,145
definitionB6Ng01-315P14.b B6Ng01-315P14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,879,045 - 118,879,654)(73,488,389 - 73,489,549)
sequence
gaattcccagcaaccacatggcagctcacatctgtctctaactccagttc
taggggatctgacactctcacaccaatgcacataaaattacacacacata
cacacacacacacacacacacacacacacacacacacaccactcttttat
ttattttagtcaggtggtgatagcacatgcctttaatcccagcactcaca
aggcaggtctatagtgtgggtttcaggacagccaaggctacacagagaaa
ccctgtcttgtaaaggaatctgtctattatgacaatgacggagattggag
ctcaccttcatgaccttgcaccttctggacaagtgttctaatactgagct
gtaccttgagccctttctttttactcaattaaaacataattacaacattt
ctctcttccatctgctccctctcccatgtccactctctctcaaatccatg
atctcttctttagccattgttgttccatacatacatatacaataaacatg
tgaatacaacctgctgagtagggacagtcattgttgtcgcatatatcatt
ttctggggctgaccaatcaggggcccatccctgggctttggctaattctc
cctccacctgtagtcactgactacaactttttatgaggcctgtggggttt
ctctcatctgtgttgagatgtcagtcagtgctggaattgttcaactttgt
ttggacagccatgctgacagcttataggtgtagcttcccggttatagcca
gaagccacactatcacatgacttcctggacttccttacaatctttctgcc
tctccttccaagatgttgctgagccttaggtatgggagttgtgttgcagg
tgtatcaactggggcaagcacctcataatctgtattttattagttgtggc
ttttcttataatggtctccttctgctgcaaaagaagctttcctttgatga
gggatgaggtttgacacttaccttgtggggtataagggacacatgtttag
aattg
gaattctatgattcatggctaagattcacaggggatgagggaccctggga
taagaggcagagctggtggcccaccacctgcatctctctaaagggatgat
gtaatgctttcctttttttggtatattgttaaatagacactgagcagggt
ggccctaaaacacagacatcacaaaagtgagccacattaagagcagctat
catctggagaatgcttttgaagtgtaatttctttacaatagcaaggttat
agtttggaccttagctattcctcagaagcctgtgacttaaaggctctctc
tgcaaagtggcaatcctggtagctggcagagccactagcagatgagccta
ctgggaaatcgtcacataattgggggcatagccttggggactcagggccc
ttggtcgctcctcattccttctctgctccctcacaatccatgagctgaat
actttaggatgctcacagcttcaaagcagtggagtgaatctgtcatgaac
caaagcgatgagctaaaataacctttttctctttaaagttagttagattg
ggtattttgttatagtgaggaaaaactggctacccaacaaaacacaaaag
tcatgtgcttagaaataaaattcacaaaaagatgagtaagatctgaactc
tagaaaaagcactgccaagaaaattaagatctgtgtagccagagagacct
cagatgctcatggattagagaccaaatcctgtgaagatgccaattgccct
ggctttatgcacagagtcagtttcagttcaactataatcccatttggaca
ttttccccctcataaaattatatcaggattctcaaatttgtatggaagcc
ttgaagaacctagaatagtcaaagcaatctgggaaaagatttctatttcc
tgatttccaacttaccgtaaggcttccataagcaggcaatatgatactag
gagagacacatatcctcataggacttaactgagtgaataaacaaaactgg
ggctggggacatgctcagattctcctcaaagcatgagaatccgagttcaa
atcctaagcaccagtaaccaggagcctgtggcactgtcttgtctgtcact
ccaggttaggatgtgaagctcctgcagccagcttggctgtaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118879045_118879654
seq2: B6Ng01-315P14.b_72_313

seq1  TGGCATCTCACAACTGTCCCTAACTCCAGTTCTAGGGTATTCAGTTTCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTGACCTCCACGGACATACATGCAAACAAAACACTCATGTACATTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTAAAGCAGTCAAGCCAGTTGTGGTGATCCTTGCTTTAAACCTCAACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGGAGGCAAAGGCAGAAAGATCATCTGTGAGTTTGAGGCCAGTATGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTATATATTGAATTCCAGGCCAGGTGGGGCTACATAGTGAGACTATC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAGAACCAAAAACAGGGGCTGCAGAGATGGCTCAGTGGTTAAGAGCAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTGCTCTTTCAGAGGTCCTGGGTTCAATTCCCAGCACCTACAGGGCA  350
                                                    ||||
seq2  ---------------------------------------------TGGCA  5

seq1  GCTCATAATTGTCTGTAATTATAGTTCCAGGAGATCTGATACCCTCACAC  400
      ||||| |  ||||| ||| |  ||||| ||| ||||||| || |||||||
seq2  GCTCACATCTGTCTCTAACTCCAGTTCTAGGGGATCTGACACTCTCACAC  55

seq1  CAATGCACATAAAACTAAATAAATTTTTTAAAAAACAAATAACAACAAAA  450
      |||||||||||||| || | | |  |    | | ||| | |   ||| | 
seq2  CAATGCACATAAAATTACACACACATACACACACACACACACACACACAC  105

seq1  ACTCTAAACCCAAATAC-------TTATTTCAGACTTAAATTCAGACTTA  493
      || | | || || | ||       ||||||     ||  | ||||  |  
seq2  ACAC-ACACACACACACCACTCTTTTATTT----ATTTTAGTCAG-GTGG  149

seq1  TGAAAGTCTGTTCCCTAAATTTGGCTTTTATTTTATGTGAAAAATATTAT  543
      ||| ||          | ||   || ||||    ||   |  | |   | 
seq2  TGATAG---------CACAT---GCCTTTA----ATCCCAGCACTCACA-  182

seq1  CTTTTAGGTA--TCT-TATTTTTCCTTATTGTTAAAAGTAAGAACATTG-  589
           ||| |  ||| || | |        |||  | |  ||  ||  | 
seq2  -----AGGCAGGTCTATAGTGT------GGGTTTCAGGACAG-CCAAGGC  220

seq1  -ATACAGAGAAACCCTGTCTTG  610
       | |||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTTG  242

seq1: chr7_73488389_73489549
seq2: B6Ng01-315P14.g_72_1216

seq1  GAATTCTATGATTCATGGCTAAGATTCACAGGGGATGAGGGACCCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATTCATGGCTAAGATTCACAGGGGATGAGGGACCCTGGGA  50

seq1  TAAGAGGCAGAGCTGGTGGCCCACCACCTGCATCTCTCTAAAGGGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCAGAGCTGGTGGCCCACCACCTGCATCTCTCTAAAGGGATGAT  100

seq1  GTAATGCTTTCCTTTTTTTGGTATATTGTTAAATAGACACTGAGCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTTTCCTTTTTTTGGTATATTGTTAAATAGACACTGAGCAGGGT  150

seq1  GGCCCTAAAACACAGACATCACAAAAGTGAGCCACATTAAGAGCAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAAAACACAGACATCACAAAAGTGAGCCACATTAAGAGCAGCTAT  200

seq1  CATCTGGAGAATGCTTTTGAAGTGTAATTTCTTTACAATAGCAAGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAGAATGCTTTTGAAGTGTAATTTCTTTACAATAGCAAGGTTAT  250

seq1  AGTTTGGACCTTAGCTATTCCTCAGAAGCCTGTGACTTAAAGGCTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGACCTTAGCTATTCCTCAGAAGCCTGTGACTTAAAGGCTCTCTC  300

seq1  TGCAAAGTGGCAATCCTGGTAGCTGGCAGAGCCACTAGCAGATGAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTGGCAATCCTGGTAGCTGGCAGAGCCACTAGCAGATGAGCCTA  350

seq1  CTGGGAAATCGTCACATAATTGGGGGCATAGCCTTGGGGACTCAGGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATCGTCACATAATTGGGGGCATAGCCTTGGGGACTCAGGGCCC  400

seq1  TTGGTCGCTCCTCATTCCTTCTCTGCTCCCTCACAATCCATGAGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCGCTCCTCATTCCTTCTCTGCTCCCTCACAATCCATGAGCTGAAT  450

seq1  ACTTTAGGATGCTCACAGCTTCAAAGCAGTGGAGTGAATCTGTCATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGATGCTCACAGCTTCAAAGCAGTGGAGTGAATCTGTCATGAAC  500

seq1  CAAAGCGATGAGCTAAAATAACCTTTTTCTCTTTAAAGTTAGTTAGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGATGAGCTAAAATAACCTTTTTCTCTTTAAAGTTAGTTAGATTG  550

seq1  GGTATTTTGTTATAGTGAGGAAAAACTGGCTACCCAACAAAACACAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTGTTATAGTGAGGAAAAACTGGCTACCCAACAAAACACAAAAG  600

seq1  TCATGTGCTTAGAAATAAAATTCACAAAAAGATGAGTAAGATCTGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTTAGAAATAAAATTCACAAAAAGATGAGTAAGATCTGAACTC  650

seq1  TAGAAAAAGCACTGCCAAGAAAATTAAGATCTGTGTAGCCAGAGAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGCACTGCCAAGAAAATTAAGATCTGTGTAGCCAGAGAGACCT  700

seq1  CAGATGCTCATGGATTAGAGACCAAATCCTGTGAAGATGCCAATTGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTCATGGATTAGAGACCAAATCCTGTGAAGATGCCAATTGCCCT  750

seq1  GGCTTTATGCACAGAGTCAGTTTCAGTTCAACTATAATCCCATTTGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATGCACAGAGTCAGTTTCAGTTCAACTATAATCCCATTTGGACA  800

seq1  TTTTCCCCCTCATAAAATTATATCA-GATTCTCAAATTTGTATGGAAGCC  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTCCCCCTCATAAAATTATATCAGGATTCTCAAATTTGTATGGAAGCC  850

seq1  TTGAAGAACCTAGAATAGTCAAAGCAATCTGGGAAAAGATTTCTATTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACCTAGAATAGTCAAAGCAATCTGGGAAAAGATTTCTATTTCC  900

seq1  TGATTTCCAAACTTACCGTAAGGCTCCCATAAGCAGGCAATATGATACTA  949
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TGATTTCC-AACTTACCGTAAGGCTTCCATAAGCAGGCAATATGATACTA  949

seq1  GGAGAGACACATATCCCCATAGGACTTAACTGAGTGAATAAACAAAACCT  999
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GGAGAGACACATATCCTCATAGGACTTAACTGAGTGAATAAACAAAA-CT  998

seq1  GGGGCTGGGGACATGGCTCAGATTTCCTCCTCAAAAGCATGAGAACCCGA  1049
      |||||||||||||| |||||||||  |||||| |||||||||||| ||||
seq2  GGGGCTGGGGACAT-GCTCAGATT--CTCCTC-AAAGCATGAGAATCCGA  1044

seq1  GTTCAAATCCCCAGCACCCAAGTAAAACCCAGGAG-CTGTGGGCACTGTC  1098
      ||||||||||  ||||||  |||||   ||||||| |||| |||||||||
seq2  GTTCAAATCCTAAGCACC--AGTAA---CCAGGAGCCTGT-GGCACTGTC  1088

seq1  -TGTCTGTCACTCCCAAGGGTTAGAGGATGTGGAGAGCTCCCTGCAGCCA  1147
       |||||||||||||    ||||  ||||||||   |||| ||||||||||
seq2  TTGTCTGTCACTCC---AGGTT--AGGATGTG--AAGCT-CCTGCAGCCA  1130

seq1  GCTTGGCTG-AATTC  1161
      ||||||||| |||||
seq2  GCTTGGCTGTAATTC  1145