BAC Information

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BAC

Clone NameB6Ng01-316C23
Chromosome13 (Build37)2 (Build37)
Map Location 53,652,854 - 53,653,942175,824,241 - 175,824,827
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040572, Syk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C23.bB6Ng01-316C23.g
ACCGA106641GA106642
length917982
definitionB6Ng01-316C23.b B6Ng01-316C23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,652,854 - 53,653,942)(175,824,241 - 175,824,827)
sequence
gaattctcacccatttccctccttcttcttctcaaccttaggtcttagtc
agatcccttaaaaaacggccctactgtgtccttgcagttttggggtgttg
ttaaccccgcccctctaatgctggtctctctgagttgctggggagggagt
catgctgccattagtttatttatgtttccttccctgaacctctcaaatct
ggcttcgaccagagactgccgcaacgagcagagtgagacgtgaacacttt
actctggtgactggcgttcagctacagccacacggtgggtatctacggtg
atgtggatggaccggtgcctgctgcaagcgaagcttattacactacacct
gacatccagcctggctcctcaatttcacatttctgataaacaccaaccac
aaagtttcatttagaatatttgtctttatgtttaaaaaataaataaacaa
cgacagttacttcaaaagaaaggaggcagatggctgtggaaaccataatc
tcagtgaaagtaacagtggctcgggtttgaccgagcctcagctgtgggta
aagcacggctcattggagatgttctaaatgtttccaggatgtggccttgc
tagagcttgcttgctctgtgttgttgttgttgctgctgttgttgttgctg
ctgttgttgttgttgctgctgttgtagttgttgctgctgttgttgttgtt
gctgctgatgatgttgctgctgctgttgttgttgctgctgctgttgttgt
tgctgctgctgatgttactgctgatgttactgctgttgttgatgctgctg
atgttgctgctgctgtagttgctgctgctgttgttactgctgttgttgtt
gctgctgttgttgttgctgctgttgttgttgctgctgctgttgtgtgctg
ctgctgtgtgttgctgc
gaattcttgccaggccaacgagaagcaaaagcttctgccaaactggaggt
gggcagaaatatcatctgaaagcctgttagaattagttaggagtttgaag
acaactgtccaatgccaaagcatgaactactaaccacaaagggaaaagaa
aatcacaccacttaggtttggagactcactgcctgactctttgcctacct
ctgctacttattagttgtgtgtgtgttgtgcaagtgactttccctctctg
taattcaattcccaaaggtgggtggtgccatccatgggcaggggggttgg
gtagggggttcaggctgtacttgaaatttgagcgagggtccctgtggaga
tgcttgagaaagaaccacggctccaggactcccccctctgctgactcagg
agaggtgacaccccaaatccctcatgaacaaaggtcttactgcaaactgc
acgaggacttttattatcgagagtgctctcaggctcacggtcataaacca
cacaggggtagagaaccgtggctcccctagtatctaggtaagggggtatt
taaaggaagaaaccacaactcagacgggtggggagaaaaacaccaagaat
accagttaagaattacaaggaagtggaaagtcaagacagttacaatgaac
ctctagcaatagcacttttggatagtgggttccagccatggtcagggtgg
gtcatggtgatttctttgaatgaacactctcaaacccagaagcagtgcgt
cacaggaatgttgctatctgattatgattagcatacctgggagcattgaa
tcacgaaggtcacattctcaagcctgggcctaaggcctagttttatgtta
tgctcttccagtgcaagagcttatataagagtaaactctctagctccata
tactctgtactggtgtagagatgccccaatctctgagagacttcagacta
aaaagaaaatttctaaaagtatgtaaacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_53652854_53653942
seq2: B6Ng01-316C23.b_42_948

seq1  GAATTCTCACCCATTTCCCTCCTTCTTCTTCTCAACCTTAGGTCTTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCATTTCCCTCCTTCTTCTTCTCAACCTTAGGTCTTAGTC  50

seq1  AGATCCCTTAAAAAACGGCCCTACTGTGTCCTTGCAGTTTTGGGGTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTTAAAAAACGGCCCTACTGTGTCCTTGCAGTTTTGGGGTGTTG  100

seq1  TTAACCCCGCCCCTCTAATGCTGGTCTCTCTGAGTTGCTGGGGAGGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCCGCCCCTCTAATGCTGGTCTCTCTGAGTTGCTGGGGAGGGAGT  150

seq1  CATGCTGCCATTAGTTTATTTATGTTTCCTTCCCTGAACCTCTCAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCCATTAGTTTATTTATGTTTCCTTCCCTGAACCTCTCAAATCT  200

seq1  GGCTTCGACCAGAGACTGCCGCAACGAGCAGAGTGAGACGTGAACACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGACCAGAGACTGCCGCAACGAGCAGAGTGAGACGTGAACACTTT  250

seq1  ACTCTGGTGACTGGCGTTCAGCTACAGCCACACGGTGGGTATCTACGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTGACTGGCGTTCAGCTACAGCCACACGGTGGGTATCTACGGTG  300

seq1  ATGTGGATGGACCGGTGCCTGCTGCAAGCGAAGCTTATTACACTACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGGACCGGTGCCTGCTGCAAGCGAAGCTTATTACACTACACCT  350

seq1  GACATCCAGCCTGGCTCCTCAATTTCACATTTCTGATAAACACCAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGCCTGGCTCCTCAATTTCACATTTCTGATAAACACCAACCAC  400

seq1  AAAGTTTCATTTAGAATATTTGTCTTTATGTTTAAAAAATAAATAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCATTTAGAATATTTGTCTTTATGTTTAAAAAATAAATAAACAA  450

seq1  CGACAGTTACTTCAAAAGAAAGGAGGCAGATGGCTGTGGAAACCATAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGTTACTTCAAAAGAAAGGAGGCAGATGGCTGTGGAAACCATAATC  500

seq1  TCAGTGAAAGTAACAGTGGCTCGGGTTTGACCGAGCCTCAGCTGTGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAAGTAACAGTGGCTCGGGTTTGACCGAGCCTCAGCTGTGGGTA  550

seq1  AAGCACGGCTCATTGGAGATGTTCTAAATGTTTCCAGGATGTGGCCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGGCTCATTGGAGATGTTCTAAATGTTTCCAGGATGTGGCCTTGC  600

seq1  TAGAGCTTGCTTGCTCTGTGTTGTTGTTGTTGCTGCTGTTGTTGTTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTGCTTGCTCTGTGTTGTTGTTGTTGCTGCTGTTGTTGTTGCTG  650

seq1  CTGTTGTTGTTGTTGCTGCTGTTGTTGTTGTTGCTGCTGTTGTTGTTGTT  700
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTTGTTGTTGTTGCTGCTGTTGTAGTTGTTGCTGCTGTTGTTGTTGTT  700

seq1  GCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGT  750
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGATGATGTTGCTGCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGT  750

seq1  TGCTGCTGCTGTTGTTACTGCTGTTGTTACTGCTGTTGTTGCTGCTGCTG  800
      ||||||||||| ||||||||||| ||||||||||||||||| ||||||||
seq2  TGCTGCTGCTGATGTTACTGCTGATGTTACTGCTGTTGTTGATGCTGCTG  800

seq1  TTGTTGCTGCTGCTGTTGTTGCTGCTGCTGTTGTTACTGCTGTTGTTGTT  850
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGTTGCTGCTGCTGTAGTTGCTGCTGCTGTTGTTACTGCTGTTGTTGTT  850

seq1  GCTGCTGTTGTTGTTGCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  GCTGCTGTTGTTGTTGCTGCTGTTGTTGTTGCTGCTGCTGTTGT--GTGC  898

seq1  TGCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGTTGCTGCTGCTGTTGTTA  950
      |||||||||                                         
seq2  TGCTGCTGT-----------------------------------------  907

seq1  CTGCTGTTGTTACTGCTGTTGTTGCTGCTGCTGTTGTTGCTGCTGCTGTT  1000
                                                        
seq2  --------------------------------------------------  907

seq1  GTTGCTGCTGCTGTTGTTGCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGC  1050
                                                        
seq2  --------------------------------------------------  907

seq1  TGCTGTTGCTGCTGCTGTTGGTGGTGGTGCTGCTGCTGT  1089
                                             
seq2  ---------------------------------------  907

seq1: chr2_175824241_175824827
seq2: B6Ng01-316C23.g_478_1049

seq1  CCCCAAATCACTCATGAGTAAAGGTCTTACTGCAAACTGCAAGAGGACTT  50
      ||||||||| |||||||  |||||||||||||||||||||| ||||||||
seq2  CCCCAAATCCCTCATGAACAAAGGTCTTACTGCAAACTGCACGAGGACTT  50

seq1  TTATTATCAAGAGTGCTCTCGGGCTCACGGTCATAAACCACACAGGGGTA  100
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTATCGAGAGTGCTCTCAGGCTCACGGTCATAAACCACACAGGGGTA  100

seq1  GAGAACCGTGGCTCCCCGAGTATCTGGGTAAGGGGGTATTTAAAGGAAGA  150
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GAGAACCGTGGCTCCCCTAGTATCTAGGTAAGGGGGTATTTAAAGGAAGA  150

seq1  AACCACAACTCAAAGGGGTGGGGAGAAAAACACCAAAAATACCAGTTAAG  200
      |||||||||||| | ||||||||||||||||||||| |||||||||||||
seq2  AACCACAACTCAGACGGGTGGGGAGAAAAACACCAAGAATACCAGTTAAG  200

seq1  AATTACAAGGAAGTGGAAAGTCAAGACAGTTACAATGAACCTCTAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAGGAAGTGGAAAGTCAAGACAGTTACAATGAACCTCTAGCAAT  250

seq1  AGCACTTTTGGATAGTGGGTTCCAGCCATGGTCAGGGTGGGTCATGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTTGGATAGTGGGTTCCAGCCATGGTCAGGGTGGGTCATGGTGA  300

seq1  TTTTCTTTGAATGAACACTCTCAGAACCCAGGAAGCAGGTGCGTCACAAG  350
       |||||||||||||||||||||| |||||| |||||| ||||||||| ||
seq2  -TTTCTTTGAATGAACACTCTCA-AACCCA-GAAGCA-GTGCGTCAC-AG  345

seq1  GAATGTTGCTATCTGTTTTATGATTAGCATACCTGGGAGCATTGAATCAC  400
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GAATGTTGCTATCTG-ATTATGATTAGCATACCTGGGAGCATTGAATCAC  394

seq1  AAAGGTCACATTCTCAAGCCTGGGCCTAAGGCCTAGTTTTTATGTTATGC  450
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGGTCACATTCTCAAGCCTGGGCCTAAGGCCTAG-TTTTATGTTATGC  443

seq1  TCTTTCAGTGCAAGAGCTTTATATAAAGAGTAAACTCTCTAGCTCCAATA  500
      |||| |||||||||||| |||||| ||||||||||||||||||||| |||
seq2  TCTTCCAGTGCAAGAGC-TTATAT-AAGAGTAAACTCTCTAGCTCC-ATA  490

seq1  TACTCTGTACT-GTGTAGAGAATGCCCAATCTCTGAGAAGACTTCAAGAA  549
      ||||||||||| |||||||||   ||||||||||||| ||||||||   |
seq2  TACTCTGTACTGGTGTAGAGATGCCCCAATCTCTGAG-AGACTTCA--GA  537

seq1  GGAAAAAGAAAAATTCTAAAAATTATGTTAAAACATCA  587
        |||||||||| |||| |||| |||||  ||||||||
seq2  CTAAAAAGAAAATTTCT-AAAAGTATGT--AAACATCA  572