BAC Information

Click to search

BAC

Clone NameB6Ng01-316I05
Chromosome2 (Build37)
Map Location 84,494,191 - 84,495,186
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316I05.bB6Ng01-316I05.g
ACCGA106891GA106892
length1,0101,152
definitionB6Ng01-316I05.b B6Ng01-316I05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggttatatagataaaggaaggtctgattacatagttaatggg
gataactgtcatatgtaaagtgtattgatctggtaccttggaaggcacag
ggaatctgccaccttggtgagctttcatttctcatctgtaaagtggtggt
actctttccattgtgccactttagaaggcagacgtactaatgagttcagt
gtctgtcacttggcaggtgcttccttggtgcattacttggtagtggtgaa
ccactgaaaactttgagggtggggagtgtcagggtaaaaactggtcatac
caattcttttattaaaactaaaaatttaaaatatgtgtatatatgctatg
catgtgcaggtgcccacagaggccaaaagagggtgtttagttcttcagag
ctagaattgtgaatcatcaattatgggtctgggaactaaactgtggaaga
gcaagaagttctcttaatactgagctatcctccctagccccccctttttt
gttttctgtttgctttttcatttgtttgtttgtttggtttgtttggtttg
gtttggttttgaaccctgctgtccttgctatgcaaatcaggctggctttg
agcttacagagatatttttgccttcacctccagagtattactaccacaca
ctatccccctactttttgttttataaaatgatttttattattttttatgt
gtatgggtgttttgcctgatatatctgtgtattatatgtgtgtgtggtgc
ccttggaggccagaagagggactttcgattccctttgaactggagttaga
gatgggctgtgagccatcatgtaggtgccggggatttgaacccaggtgct
ctagaaagggaactagttgctcttagatattgtatcatctctctagtccc
attgttttttattgttgttgttgtcgtcattatcattattttaagatgac
atgtatctcattgtagccctgtcccttgaatttgcataaatagcctaagg
gaagacattg
gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacgga
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggaaaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatctctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaaggacagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcaggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaaggaaaagggttaggacatcaagaacagggaa
ggatagagcccatctcacctaatgggaaaccaagacagacagggtctggg
ttttccatagcggccattggggcagcacgactcataccatggaaacaggg
gacccagtgtgggttctcatgcactatctctgaaaactgcagctgtgatt
cactgtagagacataactaagcaatatggacgtctacttcactggaaatc
tcattgtaattagaagtcagcaagtggagatctgcttcagaccctctctg
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84494191_84495186
seq2: B6Ng01-316I05.b_47_1056 (reverse)

seq1  CAATGTCTTCC--TTGGCTATTT-TGCAAATTCAA-GGACAGGGCTAC-A  45
      |||||||||||  | |||||||| ||||||||||| |||||||||||| |
seq2  CAATGTCTTCCCTTAGGCTATTTATGCAAATTCAAGGGACAGGGCTACAA  50

seq1  TGAGAT-CCTGTC-TCTTAAAATAATAATAATGACGACAACAACAACAAT  93
      |||||| | |||| |||||||||||| |||||||||||||||||||||||
seq2  TGAGATACATGTCATCTTAAAATAATGATAATGACGACAACAACAACAAT  100

seq1  -AAAAACAATGGGACTAGAGAGATGATTCAATATCTAAGAGC-ACTAGTT  141
       |||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AAAAAACAATGGGACTAGAGAGATGATACAATATCTAAGAGCAACTAGTT  150

seq1  CCC-TTCTAGAGCACCTGGGTTCAAAT-CCCGGCACCTACATGATGGCTC  189
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCTTTCTAGAGCACCTGGGTTCAAATCCCCGGCACCTACATGATGGCTC  200

seq1  ACAG-CCATCTCTAACTCCAGTTC-AAGGGAATCG-AAGTCCCTCTTCTG  236
      |||| ||||||||||||||||||| |||||||||| ||||||||||||||
seq2  ACAGCCCATCTCTAACTCCAGTTCAAAGGGAATCGAAAGTCCCTCTTCTG  250

seq1  GCCTCCAAGGGCACCACACACACATATAATACACAGATATATCAGGCAAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAGGGCACCACACACACATATAATACACAGATATATCAGGCAAA  300

seq1  ACACCCATACACATAAAAAATAATAAAAATCATTTTATAAAACAAAAAGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATACACATAAAAAATAATAAAAATCATTTTATAAAACAAAAAGT  350

seq1  AGGGGGATAGTGTGTGGTAGTAATACTCTGGAGGTGAAGGCAAAAATATC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGATAGTGTGTGGTAGTAATACTCTGGAGGTGAAGGCAAAAATATC  400

seq1  TCTGTAAGCTCAAAGCCAGCCTGATTTGCATAGCAAGGACAGCAGGGTTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGCTCAAAGCCAGCCTGATTTGCATAGCAAGGACAGCAGGGTTC  450

seq1  AAAACCAAACCAAACCAAACAAACCAAACAAACAAACAAATGAAAAAGCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACCAAACCAAACAAACCAAACAAACAAACAAATGAAAAAGCA  500

seq1  AACAGAAAACAAAAAAGGGGGGGCTAGGGAGGATAGCTCAGTATTAAGAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAACAAAAAAGGGGGGGCTAGGGAGGATAGCTCAGTATTAAGAG  550

seq1  AACTTCTTGCTCTTCCACAGTTTAGTTCCCAGACCCATAATTGATGATTC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGCTCTTCCACAGTTTAGTTCCCAGACCCATAATTGATGATTC  600

seq1  ACAATTCTAGCTCTGAAGAACTAAACACCCTCTTTTGGCCTCTGTGGGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTAGCTCTGAAGAACTAAACACCCTCTTTTGGCCTCTGTGGGCA  650

seq1  CCTGCACATGCATAGCATATATACACATATTTTAAATTTTTAGTTTTAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACATGCATAGCATATATACACATATTTTAAATTTTTAGTTTTAAT  700

seq1  AAAAGAATTGGTATGACCAGTTTTTACCCTGACACTCCCCACCCTCAAAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTGGTATGACCAGTTTTTACCCTGACACTCCCCACCCTCAAAG  750

seq1  TTTTCAGTGGTTCACCACTACCAAGTAATGCACCAAGGAAGCACCTGCCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGGTTCACCACTACCAAGTAATGCACCAAGGAAGCACCTGCCA  800

seq1  AGTGACAGACACTGAACTCATTAGTACGTCTGCCTTCTAAAGTGGCACAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGACACTGAACTCATTAGTACGTCTGCCTTCTAAAGTGGCACAA  850

seq1  TGGAAAGAGTACCACCACTTTACAGATGAGAAATGAAAGCTCACCAAGGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGTACCACCACTTTACAGATGAGAAATGAAAGCTCACCAAGGT  900

seq1  GGCAGATTCCCTGTGCCTTCCAAGGTACCAGATCAATACACTTTACATAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTCCCTGTGCCTTCCAAGGTACCAGATCAATACACTTTACATAT  950

seq1  GACAGTTATCCCCATTAACTATGTAATCAGACCTTCCTTTATCTATATAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTATCCCCATTAACTATGTAATCAGACCTTCCTTTATCTATATAA  1000

seq1  CCTGGAATTC  996
      ||||||||||
seq2  CCTGGAATTC  1010