BAC Information

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BAC

Clone NameB6Ng01-317A12
Chromosome10 (Build37)2 (Build37)
Map Location 38,092,311 - 38,092,69982,019,617 - 82,020,261
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317A12.bB6Ng01-317A12.g
ACCGA107276GA107277
length924645
definitionB6Ng01-317A12.b B6Ng01-317A12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,092,311 - 38,092,699)(82,019,617 - 82,020,261)
sequence
gaattctcataataaagtgtataatataaaagttataaatatttatattt
agggaatgttggtaaaagtatacttgttaattcagggggaattctttcta
ggttttattaatctaatgttatttgaactacacctgaggagaccacatat
gcatattatactcacctattacctagaagaactcagtgttttcataggac
ttaccacaacactttatatcacagttcaaaatacttgacactattggtat
gacagattctggatggcaagaaatcaagaaaacacaaacaagatggaaaa
acaaacttcaggacattgaagcagaaaaggttaaaaaaaaaaagaatatg
gactttcttatgtatcctgcagcattaagaatttcactgtctgttccaca
ctttgtctctggatcttctcccatgggtactttgatccctcttctaagaa
ggaccaaagaatccacactgtggtcttccttcttaaacctcatatagtcc
gggaattgtaggctgggtattcagaacttctgggctaatatccgcttatc
agtgagtgcataccatgtgtgctcttttgtgattgggttacctcactcag
gttgatagtctttaggttcatccatttgcctaagttttctttactttttt
tgtttgtttgtttgtttgtttttttaatattttattttattttaattagg
tattttcttcatttacatttccaaagctatcccaaaagccccccataccc
tcccccactcccctacccacgcactcccacttcttggccctggtgttccc
ctgtactgaggcatataaagtttgcaagaccaatgagcctctctttccac
tgatggccgactaggccatcttctgctacatatgcagctagagacacgag
ctccgggggggtactggttagttt

gaattcatatcatgaaaccaagtttaagagccaaacagtcccagtgaatc
tgataaaatcatcaacttcctgaagctatttcgatctgttttctccctgt
attaaggaccttctctgaaggacagggtgtttagccccactcagaactgt
ctgttctaaaacacccatggaaggagttacagagacaaagtttggagctg
agatgaaaggatggaccatgtagagactgccatacccggagatccacccc
ataatcagcatccaaacgctgacaccattgcatacactagcaagatttta
ttgaaaggacccagatgtagctgtctcttgtgagactatgctggggccta
gcaaacacagaagtggatgctcacagtcagctaatggatggatcataggg
ctcccaatggaggagctagagaaagtagccaaggagctaaagggatctgc
aaccctataggtggaacaacattatgaactaaccagtaccccggagctct
tgactctagctgcatatatatcaaaagatggcctagtcggccatcactgg
aaagagaggcccattggacttgcaaactttatatgccccagtacagggga
acaccagggccaaaaagggggagtgggtgggcaggggagtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38092311_38092699
seq2: B6Ng01-317A12.b_377_891

seq1  TTAAAAAAAAAAAGAA-------------ATGT-------TGCAATAGGT  30
      ||||||||||||||||             ||||        ||| || | 
seq2  TTAAAAAAAAAAAGAATATGGACTTTCTTATGTATCCTGCAGCATTAAGA  50

seq1  CTTT-ACTTCCCAATCCTACA---TGTAT---AATCCATCCTCATG---A  70
       ||| |||  |   ||| |||   ||| |    |||    | ||||   |
seq2  ATTTCACTGTCTGTTCC-ACACTTTGTCTCTGGATCTTCTCCCATGGGTA  99

seq1  ATTTGAGTACAAT----AGGAGGATATATGAATTGA------------CC  104
       |||||   |  |    || ||||   | ||||  |            ||
seq2  CTTTGATCCCTCTTCTAAGAAGGACCAAAGAATCCACACTGTGGTCTTCC  149

seq1  ATGATAATCTTCATATGCACC-----------------------------  125
       |  ||| | ||||||   ||                             
seq2  TTCTTAAACCTCATATAGTCCGGGAATTGTAGGCTGGGTATTCAGAACTT  199

seq1  CTGACCTCA---------------GAGT--------CGTGT----TATTA  148
      |||  || |               ||||         ||||    | || 
seq2  CTGGGCTAATATCCGCTTATCAGTGAGTGCATACCATGTGTGCTCTTTTG  249

seq1  TCCTTGGATTTCCTC--------TGAATG---TTA---TCATCCATAGTT  184
      |  |||| || ||||        |||  |   |||   ||||||||  | 
seq2  TGATTGGGTTACCTCACTCAGGTTGATAGTCTTTAGGTTCATCCAT-TTG  298

seq1  TCTCAGTTGAATTTA--------GTCCAGAAGAATCTCTTTTTTTTTAAT  226
       || ||||   ||||        ||      |  | | | ||||||||||
seq2  CCTAAGTTTTCTTTACTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTAAT  348

seq1  AT---------TTTTAATTAGGTATTTTCTTCATTTATATTTCAAATGCT  267
      ||         |||||||||||||||||||||||||| ||||| || |||
seq2  ATTTTATTTTATTTTAATTAGGTATTTTCTTCATTTACATTTCCAAAGCT  398

seq1  AACCCTAAAGTCCCCCATAACCTCCGCCCCCCACTCGACCTACCCACTCA  317
      | ||| |||| |||||||| |||    |||||||||  ||||||||| ||
seq2  ATCCCAAAAGCCCCCCATACCCT----CCCCCACTC-CCCTACCCACGCA  443

seq1  CTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTT  367
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTT  493

seq1  GCAAGACCAA-GAGCTCTCTCTT  389
      |||||||||| |||| |||||||
seq2  GCAAGACCAATGAGC-CTCTCTT  515


seq1: chr2_82019617_82020261
seq2: B6Ng01-317A12.g_68_712

seq1  GAATTCATATCATGAAACCAAGTTTAAGAGCCAAACAGTCCCAGTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCATGAAACCAAGTTTAAGAGCCAAACAGTCCCAGTGAATC  50

seq1  TGATAAAATCATCAACTTCCTGAAGCTATTTCGATCTGTTTTCTCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATCATCAACTTCCTGAAGCTATTTCGATCTGTTTTCTCCCTGT  100

seq1  ATTAAGGACCTTCTCTGAAGGACAGGGTGTTTAGCCCCACTCAGAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGACCTTCTCTGAAGGACAGGGTGTTTAGCCCCACTCAGAACTGT  150

seq1  CTGTTCTAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  200

seq1  AGATGAAAGGATGGACCATGTAGAGACTGCCATACCCGGAGATCCACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGGATGGACCATGTAGAGACTGCCATACCCGGAGATCCACCCC  250

seq1  ATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTA  300

seq1  TTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTA  350

seq1  GCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGG  400

seq1  CTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGC  450

seq1  AACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCT  500

seq1  TGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGG  550

seq1  AAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  600

seq1  ACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGG  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGG  645


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