BAC Information

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BAC

Clone NameB6Ng01-317C02
Chromosome2 (Build37)
Map Location 140,439,296 - 140,587,994
singlet/doubletdoublet
Overlap geneFlrt3
Upstream geneC130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C02.bB6Ng01-317C02.g
ACCGA107352GA107353
length1,1921,025
definitionB6Ng01-317C02.b B6Ng01-317C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,439,296 - 140,440,434)(140,586,965 - 140,587,994)
sequence
gaattcctgatctttccaagacttttatcatgaaagggtgttggattttg
tcaaatgctttctccacatctaacgagatgatcatgtggtttttgccttt
gagtttgtttacatagtggattacattgatggatttccgtatattaaacc
atccctgcatccctgaaacctacttggtcaggatggatggttgttttgat
gtgttcttggattcggttagcaggaattttattcagtaattttgcattga
tactcataagggaaattggtctgaagttctctatctttgttgggtctttc
tgtggtttaggtatcagagtaatagtggcttcataaaatgagttgggtcg
agtaccttctacttctattttgtgaaatagtttgtgaagaactggaatta
gatcttctttgaaggtctgatagaactctacactaaacccatctggtcct
gagcttttttttttgttgggagactattaatgactgcttctatttcttta
ggggatataggactgtttagatcattaacctgatcctgatttaactttgg
tttgacaggtcagtgtattaggtactgtctctacactagccactgaaaat
tgaatagctgcccagctgtaaagcataccctgaaattatggtgttagttg
gctacaaaagtgtcattccttaagtatcagttatttggaagaaaaaaggg
gtaccagctgtactgtgtgcactactatatagagttgaataaaatctttt
aaacctgtgaatataaattcctctcaattaagatttaaaggacattttag
aaaatagtatttttatattttcctgaacagaaaaagtgaagtatttttct
acagtagtagttttaaaattactcgtttttgtgcccagtgtacttttaac
tggggcaggaaaggtaaattttaagtgtattttataatgcatttttagct
tggaaatattcaaatatgttcaccagttaattttaaatcatatttccttt
ggaccagagatgatgggttaggatggcctgcaaaagctgtacgtgagtgt
caccaattatccacagtgcactgcagagtaactgatgattctatgagttt
ctgatgataaataaaacagttgtttctgttatcatgaaatgcaccagtta
atgaatgtgtctgcactctcggtagcatgatgtccaaataaa

gaattccattgcaggtgtgttctttccaggggtaggccaaacaaaatcct
atgtgaacatccaaggtggaaaggagtcaaggaagcaggttgatggccaa
gtcaggccgtgttataggacggagaagagtggcatgacataatgatgctg
tcatgaagggaggatgctagcagggtgggtaaatgctttccaaggtactc
acaacatgcagcttgccactggggaaaaatgctgcactttactgggattc
tgcaggactgccgagtcaggtctggtagctatgggagaagacactaagag
caggccctggaagcctctgtggaaatgggaacttgtatagcacatgaatc
tctgccattggtttcaagcctcctaggaccacagaaagatgacccttagt
ctctgctgaggacagtctgaggtcactgtttagctgacaagggtgagctt
aaaatgaccacttcttattgctttttttgtaggaagagattagagttgct
tagaacagactaccaaactaccaagcctctcagaagcagactcagggttc
agccaccactgaagaaccgggggggctggaatggggacaggtggaattta
ctgcttctcagaccttgtgctaagaaccttagatatgataacttgtgtaa
tcttcatagttgcccagtggttgaaggaccatcattcccatttcacagat
gtgagaactgaaaatatgaaaactaactactattattctgaaaagacaga
accagcgataaaaatgagtcccaatgacacattgctataccataggccag
tgcctcctcactcagccccccttagagaaggttcttctttcagtaggtgg
cactaacacggatatagacccacagctgatgctggtactttttgtgttac
tggggtgttgttgctactgttgctaattgttccattttcattctggagtt
tgggcatttctttgttttattttcatatttcttttggagagagaagaaaa
aagcatgatttgggtgaataggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140439296_140440434
seq2: B6Ng01-317C02.b_97_1237

seq1  CAAATGCTTTCTCCACATCTAACGAGATGATCATGTGGTTTTTGCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTCTCCACATCTAACGAGATGATCATGTGGTTTTTGCCTTTG  50

seq1  AGTTTGTTTACATAGTGGATTACATTGATGGATTTCCGTATATTAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTACATAGTGGATTACATTGATGGATTTCCGTATATTAAACCA  100

seq1  TCCCTGCATCCCTGAAACCTACTTGGTCAGGATGGATGGTTGTTTTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCATCCCTGAAACCTACTTGGTCAGGATGGATGGTTGTTTTGATG  150

seq1  TGTTCTTGGATTCGGTTAGCAGGAATTTTATTCAGTAATTTTGCATTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGGATTCGGTTAGCAGGAATTTTATTCAGTAATTTTGCATTGAT  200

seq1  ACTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCT  250

seq1  GTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTCGA  300

seq1  GTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGAAGAACTGGAATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGAAGAACTGGAATTAG  350

seq1  ATCTTCTTTGAAGGTCTGATAGAACTCTACACTAAACCCATCTGGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTGAAGGTCTGATAGAACTCTACACTAAACCCATCTGGTCCTG  400

seq1  AGCTTTTTTTTTTGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTTTTTGTTGGGAGACTATTAATGACTGCTTCTATTTCTTTAG  450

seq1  GGGATATAGGACTGTTTAGATCATTAACCTGATCCTGATTTAACTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAGGACTGTTTAGATCATTAACCTGATCCTGATTTAACTTTGGT  500

seq1  TTGACAGGTCAGTGTATTAGGTACTGTCTCTACACTAGCCACTGAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGTCAGTGTATTAGGTACTGTCTCTACACTAGCCACTGAAAATT  550

seq1  GAATAGCTGCCCAGCTGTAAAGCATACCCTGAAATTATGGTGTTAGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTGCCCAGCTGTAAAGCATACCCTGAAATTATGGTGTTAGTTGG  600

seq1  CTACAAAAGTGTCATTCCTTAAGTATCAGTTATTTGGAAGAAAAAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAGTGTCATTCCTTAAGTATCAGTTATTTGGAAGAAAAAAGGGG  650

seq1  TACCAGCTGTACTGTGTGCACTACTATATAGAGTTGAATAAAATCTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCTGTACTGTGTGCACTACTATATAGAGTTGAATAAAATCTTTTA  700

seq1  AACCTGTGAATATAAATTCCTCTCAATTAAGATTTAAAGGACATTTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGAATATAAATTCCTCTCAATTAAGATTTAAAGGACATTTTAGA  750

seq1  AAATAGTATTTTTATATTTTCCTGAACAGAAAAAGTGAAGTATTTTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATTTTTATATTTTCCTGAACAGAAAAAGTGAAGTATTTTTCTA  800

seq1  CAGTAGTAGTTTTAAAATTACTCGTTTTTGTGCCCAGTGTACTTTTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAGTTTTAAAATTACTCGTTTTTGTGCCCAGTGTACTTTTAACT  850

seq1  GGGGCAGGAAAGGTAAATTTTAAGTGTATTTTATAATGCATTTTTAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGAAAGGTAAATTTTAAGTGTATTTTATAATGCATTTTTAGCTT  900

seq1  GGAAATATTCAAAATATGTTCACCAGTTAATTTTAAATCATA-TTCCTTT  949
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  GGAAATATTC-AAATATGTTCACCAGTTAATTTTAAATCATATTTCCTTT  949

seq1  GGACCAGAGATGAT-GGTTAGGATGGCCTGCAAAAAGCCTGTACGTGAGT  998
      |||||||||||||| ||||||||||||||||||||   ||||||||||||
seq2  GGACCAGAGATGATGGGTTAGGATGGCCTGCAAAA--GCTGTACGTGAGT  997

seq1  GTCA-CAATTAT-CACAGTGCACTGCAGAGTAACTGATGA-TCTATGAGT  1045
      |||| ||||||| ||||||||||||||||||||||||||| |||||||||
seq2  GTCACCAATTATCCACAGTGCACTGCAGAGTAACTGATGATTCTATGAGT  1047

seq1  TTCTGAATGGATAAATAAAACCAGTTGTTTCTG-TATCATGAAATGCACC  1094
      ||||||   ||||||||||| |||||||||||| ||||||||||||||||
seq2  TTCTGA--TGATAAATAAAA-CAGTTGTTTCTGTTATCATGAAATGCACC  1094

seq1  AGTAAAATGAATG---CTGCACTCTTCCGTAGCATGATG-CCAAATAAA  1139
      |||  ||||||||   |||||||| || ||||||||||| |||||||||
seq2  AGT-TAATGAATGTGTCTGCACTC-TCGGTAGCATGATGTCCAAATAAA  1141


seq1: chr2_140586965_140587994
seq2: B6Ng01-317C02.g_67_1091 (reverse)

seq1  CCCCCTATTCACCCAAATCCATGCTTTTTTTCTCTCTCTCCAAAAAGAAA  50
      |||||||||||||||||| |||||||||||  ||||||||| ||||||||
seq2  CCCCCTATTCACCCAAAT-CATGCTTTTTTCTTCTCTCTCC-AAAAGAAA  48

seq1  TATGAAAATAAAAACAAAGAAATGCCCAAACCTCCAGAATGAAAATGGAA  100
      ||||||||| |||||||||||||||||||| ||||||||||||||||| |
seq2  TATGAAAAT-AAAACAAAGAAATGCCCAAA-CTCCAGAATGAAAATGG-A  95

seq1  ACAATTAGCAACAGTAGCAACAACACCCCAGTAACACAAAAAGTACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGCAACAGTAGCAACAACACCCCAGTAACACAAAAAGTACCAGC  145

seq1  ATCAGCTGTGGGTCTATATCCCTGTTAGTGCCACCTACTGAAAGAAGAAC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCAGCTGTGGGTCTATATCCGTGTTAGTGCCACCTACTGAAAGAAGAAC  195

seq1  CTTCTCTAAGGGGGGCTGAGTGAGGAGGCACTGGCCTATGGTATAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAAGGGGGGCTGAGTGAGGAGGCACTGGCCTATGGTATAGCAAT  245

seq1  GTGTCATTGGGACTCATTTTTATCGCTGGTTCTGTCTTTTCAGAATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTGGGACTCATTTTTATCGCTGGTTCTGTCTTTTCAGAATAATA  295

seq1  GTAGTTAGTTTTCATATTTTCAGTTCTCACATCTGTGAAATGGGAATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGTTTTCATATTTTCAGTTCTCACATCTGTGAAATGGGAATGAT  345

seq1  GGTCCTTCAACCACTGGGCAACTATGAAGATTACACAAGTTATCATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCAACCACTGGGCAACTATGAAGATTACACAAGTTATCATATCT  395

seq1  AAGGTTCTTAGCACAAGGTCTGAGAAGCAGTAAATTCCACCTGTCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTTAGCACAAGGTCTGAGAAGCAGTAAATTCCACCTGTCCCCAT  445

seq1  TCCAGCCCCCCCGGTTCTTCAGTGGTGGCTGAACCCTGAGTCTGCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCCCCGGTTCTTCAGTGGTGGCTGAACCCTGAGTCTGCTTCTG  495

seq1  AGAGGCTTGGTAGTTTGGTAGTCTGTTCTAAGCAACTCTAATCTCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTGGTAGTTTGGTAGTCTGTTCTAAGCAACTCTAATCTCTTCCT  545

seq1  ACAAAAAAAGCAATAAGAAGTGGTCATTTTAAGCTCACCCTTGTCAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAGCAATAAGAAGTGGTCATTTTAAGCTCACCCTTGTCAGCTA  595

seq1  AACAGTGACCTCAGACTGTCCTCAGCAGAGACTAAGGGTCATCTTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGACCTCAGACTGTCCTCAGCAGAGACTAAGGGTCATCTTTCTGT  645

seq1  GGTCCTAGGAGGCTTGAAACCAATGGCAGAGATTCATGTGCTATACAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAGGAGGCTTGAAACCAATGGCAGAGATTCATGTGCTATACAAGT  695

seq1  TCCCATTTCCACAGAGGCTTCCAGGGCCTGCTCTTAGTGTCTTCTCCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTCCACAGAGGCTTCCAGGGCCTGCTCTTAGTGTCTTCTCCCAT  745

seq1  AGCTACCAGACCTGACTCGGCAGTCCTGCAGAATCCCAGTAAAGTGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAGACCTGACTCGGCAGTCCTGCAGAATCCCAGTAAAGTGCAGC  795

seq1  ATTTTTCCCCAGTGGCAAGCTGCATGTTGTGAGTACCTTGGAAAGCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCCAGTGGCAAGCTGCATGTTGTGAGTACCTTGGAAAGCATTT  845

seq1  ACCCACCCTGCTAGCATCCTCCCTTCATGACAGCATCATTATGTCATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCTGCTAGCATCCTCCCTTCATGACAGCATCATTATGTCATGCC  895

seq1  ACTCTTCTCCGTCCTATAACACGGCCTGACTTGGCCATCAACCTGCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTCCGTCCTATAACACGGCCTGACTTGGCCATCAACCTGCTTCC  945

seq1  TTGACTCCTTTCCACCTTGGATGTTCACATAGGATTTTGTTTGGCCTACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTTTCCACCTTGGATGTTCACATAGGATTTTGTTTGGCCTACC  995

seq1  CCTGGAAAGAACACACCTGCAATGGAATTC  1030
      ||||||||||||||||||||||||||||||
seq2  CCTGGAAAGAACACACCTGCAATGGAATTC  1025


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