BAC Information

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BAC

Clone NameB6Ng01-317E04
Chromosome2 (Build37)
Map Location 162,762,535 - 162,911,481
singlet/doubletdoublet
Overlap geneSfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947
Downstream gene2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317E04.bB6Ng01-317E04.g
ACCGA107452GA107453
length1,1711,050
definitionB6Ng01-317E04.b B6Ng01-317E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,910,308 - 162,911,481)(162,762,535 - 162,763,576)
sequence
gaattcaatacacactcacagtaattttcaagtagaaagtttaagaccag
gtgaagcttgaagaatctaatggcctctgcacaggctggttcgggctaag
tcccagctctgtcaccatctgatgctggtttgggctaagtcccagctctg
tcaccatcagatgctgggttcacaggtttccatcagttgttcaggagtaa
aaagctgctcgtgcttgtaaaaaggactgagtagttgagcaaattcaaac
cagggaacctttcttttgttttttgtagacagggtttctctgtgtagccc
cactgtccgggaactcatgctatagaccaggctggcctcgaaaccggcct
gcctgggaacctttccctcaaggctaacaataatggtatggttcagccat
ccaagccactcctccaggcaaagtctcactgacaaacccaggtcccagcc
atcagctgttgcctgggcctgcttcagtcccttcaaaagaactggggaaa
tgcattcggctacacaacaaactactgcctcttctgtcacagctagtgta
ggttctgtcaggtgaggtcgagtcccttagggcactccctagcctgagtg
tgcgctttaatcctccccaacctccagagcctgtctccccatcttcacct
tggggctgtgatagacacaggctatcatttggatcttgctggcccaaccc
tctccaaccttcagagggtgaagttttgagagttcctactcagtcccgtt
ttgctctcagctcagtacatcagtctaagaaacaccaactatggatggat
accactgatggcggctacaaagatttagcacagctgaggtcccttccagc
tcatccgcagcacaagtgtctctcctaggctagttcatcagcacagccaa
agttccaggggacagggctcctcttgaaagcctttagacctgtatttctg
ggcaacagcagcagccatgacactccagagtcttggtgggaacctttgga
aagtgcagttcaagccttcttccccaagaagcagaaaaaggaggagtcag
aacactacatgtgttactctttttatttgtcacttggcctgaccagagac
acatttcgggtgtgtttttgcagaaactcaagcttaaagagccaccctta
atattgcagtgcagcacccat
gaattcagttccctaccaactaatgcgcagaattgaagaatcccatcctg
cacacattggttggtgccctgggtggaatagcaacgacaccaactgataa
aagcacaagagaagtggggaacatcttgagtcctgttggacgtgatagtg
tttcttgatctgtatgccacagtgcctttatggccagtttgagtcctacc
tacttcagtttttatgttcccactcctcctgtgttaataacattgctttc
atcttggatattttttttctactttgttaacctactttatgctttatctc
aataaaatgcttaccaagggaaagacttgttcttcatttattgtgttgtc
ccttggcaccaaataattgccaggtagttcttttgaagtggagttaacca
ttagctaccattgatgtgttctcttgttttagctctaaaaagcagggttt
ggggacttcaaataagtagatggtttgttttattttcatgtgtttactcg
tgtccatttttatctgtagttgtttttaaaacagtcaacttaggaagttt
taaatacctgaaatgcttaacctagtgtctgtccttaaccctggacctag
ggcacacttgagctttgcaagtttacccgtcaataccatcgtattccctt
tgcttaaccttgttctcagaagctttgcctgtggttgacctgattgcgga
tacgtgatgtggaaccaagtgtggagtttcactttgtgtttatagaaata
atccagggcttcgtgtgtggctcaggttgagcatgtgatcttagcaggta
cacaatcctcgttggtgtgctgctctccctcacatacagactcatagggg
caaattataatatagtacacacttttgatagcatgagaagctaacgcaga
tggcttctggataataattagcgagaaactttgtcgggggaagcagacac
ttcttgggagtataaaataatttgagtctaattgctattaattagagtcg
ccactatttacagtaatctatttgtatctttatatttggttgtggtgtgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162910308_162911481
seq2: B6Ng01-317E04.b_47_1217 (reverse)

seq1  ATGGGTGCTGCCACCTGCATTATT-AGGGTGGCTCTTTTAAACCTGGAAT  49
      |||||||||||   ||||| |||| |||||||||||||  || || || |
seq2  ATGGGTGCTGC--ACTGCAATATTAAGGGTGGCTCTTT--AAGCTTGAGT  46

seq1  TTCCTCGCAGACACACCC-AAATGTGTCTTCTGGTCA-GCCAAGTTGACA  97
      |||  |  | |||||||| ||||||||| |||||||| |||||| |||||
seq2  TTCTGCAAAAACACACCCGAAATGTGTC-TCTGGTCAGGCCAAG-TGACA  94

seq1  ---ATAAAGAGTAACACATTGTAGTG-TCTGACTCCTCCTTTTTCTGCTT  143
         | ||||||||||||| ||||||| ||||||||||||||||||||| |
seq2  AATAAAAAGAGTAACACA-TGTAGTGTTCTGACTCCTCCTTTTTCTGC-T  142

seq1  TCTTGGGGAAG-AGGCCTGAACTGCCTTCTTTCCAAAGGTTCCCACCAAG  192
      ||||||||||| |||| ||||||||   ||||||||||||||||||||||
seq2  TCTTGGGGAAGAAGGCTTGAACTGC--ACTTTCCAAAGGTTCCCACCAAG  190

seq1  ACTCTGGAGTGTCATGGCTGCCTGCTGTTGCCCAGAAATACAGGTCTAAA  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCTGGAGTGTCATGGCTG-CTGCTGTTGCCCAGAAATACAGGTCTAAA  239

seq1  GGCTTTCAAGAGGAGCCCTGTCCCCTGGAACTTTGGCTGTGCTGATGAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAAGAGGAGCCCTGTCCCCTGGAACTTTGGCTGTGCTGATGAAC  289

seq1  TAGCCTAGGAGAGACACTTGTGCTGCGGATGAGCTGGAAGGGACCTCAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGGAGAGACACTTGTGCTGCGGATGAGCTGGAAGGGACCTCAGC  339

seq1  TGTGCTAAATCTTTGTAGCCGCCATCAGTGGTATCCATCCATAGTTGGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAAATCTTTGTAGCCGCCATCAGTGGTATCCATCCATAGTTGGTG  389

seq1  TTTCTTAGACTGATGTACTGAGCTGAGAGCAAAACGGGACTGAGTAGGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGACTGATGTACTGAGCTGAGAGCAAAACGGGACTGAGTAGGAA  439

seq1  CTCTCAAAACTTCACCCTCTGAAGGTTGGAGAGGGTTGGGCCAGCAAGAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAACTTCACCCTCTGAAGGTTGGAGAGGGTTGGGCCAGCAAGAT  489

seq1  CCAAATGATAGCCTGTGTCTATCACAGCCCCAAGGTGAAGATGGGGAGAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGATAGCCTGTGTCTATCACAGCCCCAAGGTGAAGATGGGGAGAC  539

seq1  AGGCTCTGGAGGTTGGGGAGGATTAAAGCGCACACTCAGGCTAGGGAGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGGAGGTTGGGGAGGATTAAAGCGCACACTCAGGCTAGGGAGTG  589

seq1  CCCTAAGGGACTCGACCTCACCTGACAGAACCTACACTAGCTGTGACAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGGACTCGACCTCACCTGACAGAACCTACACTAGCTGTGACAGA  639

seq1  AGAGGCAGTAGTTTGTTGTGTAGCCGAATGCATTTCCCCAGTTCTTTTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTAGTTTGTTGTGTAGCCGAATGCATTTCCCCAGTTCTTTTGA  689

seq1  AGGGACTGAAGCAGGCCCAGGCAACAGCTGATGGCTGGGACCTGGGTTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGAAGCAGGCCCAGGCAACAGCTGATGGCTGGGACCTGGGTTTG  739

seq1  TCAGTGAGACTTTGCCTGGAGGAGTGGCTTGGATGGCTGAACCATACCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGACTTTGCCTGGAGGAGTGGCTTGGATGGCTGAACCATACCAT  789

seq1  TATTGTTAGCCTTGAGGGAAAGGTTCCCAGGCAGGCCGGTTTCGAGGCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGCCTTGAGGGAAAGGTTCCCAGGCAGGCCGGTTTCGAGGCCA  839

seq1  GCCTGGTCTATAGCATGAGTTCCCGGACAGTGGGGCTACACAGAGAAACC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTATAGCATGAGTTCCCGGACAGTGGGGCTACACAGAGAAACC  889

seq1  CTGTCTACAAAAAACAAAAGAAAGGTTCCCTGGTTTGAATTTGCTCAACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACAAAAAACAAAAGAAAGGTTCCCTGGTTTGAATTTGCTCAACT  939

seq1  ACTCAGTCCTTTTTACAAGCACGAGCAGCTTTTTACTCCTGAACAACTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCCTTTTTACAAGCACGAGCAGCTTTTTACTCCTGAACAACTGA  989

seq1  TGGAAACCTGTGAACCCAGCATCTGATGGTGACAGAGCTGGGACTTAGCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCTGTGAACCCAGCATCTGATGGTGACAGAGCTGGGACTTAGCC  1039

seq1  CAAACCAGCATCAGATGGTGACAGAGCTGGGACTTAGCCCGAACCAGCCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGCATCAGATGGTGACAGAGCTGGGACTTAGCCCGAACCAGCCT  1089

seq1  GTGCAGAGGCCATTAGATTCTTCAAGCTTCACCTGGTCTTAAACTTTCTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGCCATTAGATTCTTCAAGCTTCACCTGGTCTTAAACTTTCTA  1139

seq1  CTTGAAAATTACTGTGAGTGTGTATTGAATTC  1174
      ||||||||||||||||||||||||||||||||
seq2  CTTGAAAATTACTGTGAGTGTGTATTGAATTC  1171

seq1: chr2_162762535_162763576
seq2: B6Ng01-317E04.g_68_1117

seq1  GAATTCAGTTCCCTACCAACTAATGCGCAGAATTGAAGAATCCCATCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCTACCAACTAATGCGCAGAATTGAAGAATCCCATCCTG  50

seq1  CACACATTGGTTGGTGCCCTGGGTGGAATAGCAACGACACCAACTGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTGGTTGGTGCCCTGGGTGGAATAGCAACGACACCAACTGATAA  100

seq1  AAGCACAAGAGAAGTGGGGAACATCTTGAGTCCTGTTGGACGTGATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAGAGAAGTGGGGAACATCTTGAGTCCTGTTGGACGTGATAGTG  150

seq1  TTTCTTGATCTGTATGCCACAGTGCCTTTATGGCCAGTTTGAGTCCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGATCTGTATGCCACAGTGCCTTTATGGCCAGTTTGAGTCCTACC  200

seq1  TACTTCAGTTTTTATGTTCCCACTCCTCCTGTGTTAATAACATTGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGTTTTTATGTTCCCACTCCTCCTGTGTTAATAACATTGCTTTC  250

seq1  ATCTTGGATATTTTTTTTCTACTTTGTTAACCTACTTTATGCTTTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGATATTTTTTTTCTACTTTGTTAACCTACTTTATGCTTTATCTC  300

seq1  AATAAAATGCTTACCAAGGGAAAGACTTGTTCTTCATTTATTGTGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGCTTACCAAGGGAAAGACTTGTTCTTCATTTATTGTGTTGTC  350

seq1  CCTTGGCACCAAATAATTGCCAGGTAGTTCTTTTGAAGTGGAGTTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCACCAAATAATTGCCAGGTAGTTCTTTTGAAGTGGAGTTAACCA  400

seq1  TTAGCTACCATTGATGTGTTCTCTTGTTTTAGCTCTAAAAAGCAGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACCATTGATGTGTTCTCTTGTTTTAGCTCTAAAAAGCAGGGTTT  450

seq1  GGGGACTTCAAATAAGTAGATGGTTTGTTTTATTTTCATGTGTTTACTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTCAAATAAGTAGATGGTTTGTTTTATTTTCATGTGTTTACTCG  500

seq1  TGTCCATTTTTATCTGTAGTTGTTTTTAAAACAGTCAACTTAGGAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTTTATCTGTAGTTGTTTTTAAAACAGTCAACTTAGGAAGTTT  550

seq1  TAAATACCTGAAATGCTTAACCTAGTGTCTGTCCTTAACCCTGGACCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTGAAATGCTTAACCTAGTGTCTGTCCTTAACCCTGGACCTAG  600

seq1  GGCACACTTGAGCTTTGCAAGTTTACCCGTCAATACCATCGTATTCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTTGAGCTTTGCAAGTTTACCCGTCAATACCATCGTATTCCCTT  650

seq1  TGCTTAACCTTGTTCTCAGAAGCTTTGCCTGTGGTTGACCTGATTGCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACCTTGTTCTCAGAAGCTTTGCCTGTGGTTGACCTGATTGCGGA  700

seq1  TACGTGATGTGGAACCAAGTGTGGAGTTTCACTTTGTGTTTATAGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGATGTGGAACCAAGTGTGGAGTTTCACTTTGTGTTTATAGAAATA  750

seq1  ATCCAGGGCTTCGTGTGTGGCTCAGGTTGAGCATGTGATCTTAGCAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCTTCGTGTGTGGCTCAGGTTGAGCATGTGATCTTAGCAGGTA  800

seq1  CACAATCCTCGTTGGTGTGCTGCTCTCCCTCACATACAGACTCATAGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCTCGTTGGTGTGCTGCTCTCCCTCACATACAGACTCATAGGGG  850

seq1  CAAATTATAATATAGTACACACTTTTGATAGCATGAGAAGCTAAGGCAGG  900
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CAAATTATAATATAGTACACACTTTTGATAGCATGAGAAGCTAACGCA-G  899

seq1  ATGGC-TCTGGAT-ATAATTAGCGAGAAACTTTGTCGGGGGAAGCAGACA  948
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTGGATAATAATTAGCGAGAAACTTTGTCGGGGGAAGCAGACA  949

seq1  CTTCTTGGGAGTATAAAATAATTTGAGTCTAATTGCTATTAATTAGAAGT  998
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCTTGGGAGTATAAAATAATTTGAGTCTAATTGCTATTAATTAG-AGT  998

seq1  CGCCACTATTTACAGTAATCTATTTGTATC-TTATAT-------TGGTGT  1040
      |||||||||||||||||||||||||||||| ||||||       ||||||
seq2  CGCCACTATTTACAGTAATCTATTTGTATCTTTATATTTGGTTGTGGTGT  1048

seq1  GT  1042
      ||
seq2  GT  1050