BAC Information

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BAC

Clone NameB6Ng01-317L01
Chromosome2 (Build37)
Map Location 92,460,454 - 92,651,164
singlet/doubletdoublet
Overlap genenone
Upstream geneCkap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
Downstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317L01.bB6Ng01-317L01.g
ACCGA107771GA107772
length1,1791,059
definitionB6Ng01-317L01.b B6Ng01-317L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,649,981 - 92,651,164)(92,460,454 - 92,461,665)
sequence
gaattcccaacacttcaggatcctcatggtcaggtggggaaactgaggct
ctgagactctgacttggctgagaccacacagttaatacacagcacaagca
ggatctagcctcattgtctctgcatctggaaccttcctttataacaaagc
caccagagtaagctgtacaggagtaacttgtccaccatggtctccgcaga
cagcattctgggcttatttatatctgtccccattgggaatggaagcatgg
aagacaaaggatactctacttggggatcactcatgtcggtcttctgtacc
tatggagaacaggaaccatcctcacctggaagggcagctgtctctctcac
aagggtgggcagtgtccacactgctggtaagggcaccactggccaccact
ggcctcaatgggaaaagccagtctctgcccctcccccctgaataccttgg
ctgctgtcacctcctctcactttctggggatgatcccacaccctcatccc
tgatcctttttcctcttcccaccatcagcttctatcagcccctgatcttt
ccagatgccagtaattccaagaagagatccagtcaagagtcaagctgctg
ctgcccaaaggacctggctttgccttcttggtttctgtatcattaccccg
tcccaagacagcaggttctctcccagcttcaaagaaaacaggaggcagag
gaaaagcctgtgagtagagaaacataggaacttcattctctctgcctcct
tggaaagccacatggctgttggcaaagcgtgctaaagagctgggaagatg
gttcagtcagtaaagtgttcatcttgtaagggtaaggactgagtccaatc
ccaggacccacattttaaaaaaatgctaggggctggagagatgactcagc
agtttaagacacttgctgctcccagcacctacaccaagcagttcacaacc
acacgtaactccagcttcaggcatctgcccttgtctgagctctatggcac
ctgcacacacgtggtttatgcacacacgccacatactaaaaataaaagtg
ctattaaaaaagtgctagtcatggtagaacactcttataattcagtttct
agggagtagaaactgaatcccaagggccttactctgctgtcagctaagaa
tcatggtgagtctcagccagtaacctgtc
gaattcactgaggaaaggggcagggttttgtttgtttgtttgtttgtttg
tttgtttgtttttgtctgtctctccctggaaatagctagccagctacatc
ctcctactgagacttccttctgttacactccagcagactggatgtgacca
tactcggcctgcacagcatcctgctttcttttccgtgagggtagcagaag
gcatttagaacaatccagagaagggagggaatgtgtgagctaggtgacag
gaacctcaaattgagatcttgtcctattgcatctggctggacaaatgaga
gatcgtatcgggacatctatgtccctgcagtagtctggggacaatgaggg
gaagcagtatgctttcttgactaggaaaatagttcagtcaataaagtact
tgctttgcaagcatgaggacatcagtttgatctcccaagcctatataaaa
gagccccatggtatgcttgtaatcccagtgctggcaaagacacgtaaaac
tgagcccctgtctcaaaaaaccagggtagagagaagctgaggaagatatc
tgaggttgacctttgacatctacacataacctcagacacatgtactcaca
cacacatggacatgcatacataaaacacataccctctaagaagaatgagt
tctgtaggtaaggcagaataatggatagcagaattatggatacagatgag
catgaggcaggctaaccacattctccaaatacctcttctgtcttaaaaaa
aaaaaaaaaaaccctacttattctgtttgaccctgagaacgtttattaaa
gatcttcatactatcatagcagaaatcatccctcttttagtagttatagc
ttttatttatttaatttatttattatttatttataattttggcattatgg
gttttgagactgtgttctagttattacacaagtacaacattgttactatt
ttcttgtgaacagaacctgccacatttttgaagagttccctggttcttgt
ctgtagtagttgctccctaaatgcacttggaaagcctagtgtggaagctt
tgctccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92649981_92651164
seq2: B6Ng01-317L01.b_45_1223 (reverse)

seq1  GACAGGTCACTGGCCTGAGACTCACCATGTGATCTAGGCTGGACAGCCAG  50
      ||||||| ||||| |||||||||||||||   |||  ||| ||||| |||
seq2  GACAGGTTACTGG-CTGAGACTCACCATG-ATTCTTAGCT-GACAG-CAG  46

seq1  AGTAA-GCCCTGGGGA-TCAGTTTCTACCTTCCTAGACACTTGGATTATA  98
      ||||| ||||| |||| |||||||||| || |||||| || || ||||||
seq2  AGTAAGGCCCTTGGGATTCAGTTTCTA-CTCCCTAGAAAC-TGAATTATA  94

seq1  AGAGTGTTCTACCATGACTAGCACTTTTTTAATAGCACTTTTATTTTTAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCTACCATGACTAGCACTTTTTTAATAGCACTTTTATTTTTAG  144

seq1  TTATGT-GCGTGTGTGCATAAACCACGTGTGTGCAGGTGCCATAGAGCTC  197
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -TATGTGGCGTGTGTGCATAAACCACGTGTGTGCAGGTGCCATAGAGCTC  193

seq1  AGACAAGGGCAGATGCCCTGAAGCTGGAGTTACGTGTGGTTGTGAACTGC  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGACAAGGGCAGATG-CCTGAAGCTGGAGTTACGTGTGGTTGTGAACTGC  242

seq1  TTGGTGTAGGTGCTGGGAGCAGCAAGTGTCTTAAACTGCTGAGTCATCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTAGGTGCTGGGAGCAGCAAGTGTCTTAAACTGCTGAGTCATCTC  292

seq1  TCCAGCCCCTAGCATTTTTTTAAAATGTGGGTCCTGGGATTGGACTCAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCTAGCATTTTTTTAAAATGTGGGTCCTGGGATTGGACTCAGT  342

seq1  CCTTACCCTTACAAGATGAACACTTTACTGACTGAACCATCTTCCCAGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCTTACAAGATGAACACTTTACTGACTGAACCATCTTCCCAGCT  392

seq1  CTTTAGCACGCTTTGCCAACAGCCATGTGGCTTTCCAAGGAGGCAGAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCACGCTTTGCCAACAGCCATGTGGCTTTCCAAGGAGGCAGAGAG  442

seq1  AATGAAGTTCCTATGTTTCTCTACTCACAGGCTTTTCCTCTGCCTCCTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTTCCTATGTTTCTCTACTCACAGGCTTTTCCTCTGCCTCCTGT  492

seq1  TTTCTTTGAAGCTGGGAGAGAACCTGCTGTCTTGGGACGGGGTAATGATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAAGCTGGGAGAGAACCTGCTGTCTTGGGACGGGGTAATGATA  542

seq1  CAGAAACCAAGAAGGCAAAGCCAGGTCCTTTGGGCAGCAGCAGCTTGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAAGAAGGCAAAGCCAGGTCCTTTGGGCAGCAGCAGCTTGACT  592

seq1  CTTGACTGGATCTCTTCTTGGAATTACTGGCATCTGGAAAGATCAGGGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGGATCTCTTCTTGGAATTACTGGCATCTGGAAAGATCAGGGGC  642

seq1  TGATAGAAGCTGATGGTGGGAAGAGGAAAAAGGATCAGGGATGAGGGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAGCTGATGGTGGGAAGAGGAAAAAGGATCAGGGATGAGGGTGT  692

seq1  GGGATCATCCCCAGAAAGTGAGAGGAGGTGACAGCAGCCAAGGTATTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATCCCCAGAAAGTGAGAGGAGGTGACAGCAGCCAAGGTATTCAG  742

seq1  GGGGGAGGGGCAGAGACTGGCTTTTCCCATTGAGGCCAGTGGTGGCCAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGGCAGAGACTGGCTTTTCCCATTGAGGCCAGTGGTGGCCAGT  792

seq1  GGTGCCCTTACCAGCAGTGTGGACACTGCCCACCCTTGTGAGAGAGACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTTACCAGCAGTGTGGACACTGCCCACCCTTGTGAGAGAGACAG  842

seq1  CTGCCCTTCCAGGTGAGGATGGTTCCTGTTCTCCATAGGTACAGAAGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTCCAGGTGAGGATGGTTCCTGTTCTCCATAGGTACAGAAGACC  892

seq1  GACATGAGTGATCCCCAAGTAGAGTATCCTTTGTCTTCCATGCTTCCATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGTGATCCCCAAGTAGAGTATCCTTTGTCTTCCATGCTTCCATT  942

seq1  CCCAATGGGGACAGATATAAATAAGCCCAGAATGCTGTCTGCGGAGACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGGGACAGATATAAATAAGCCCAGAATGCTGTCTGCGGAGACCA  992

seq1  TGGTGGACAAGTTACTCCTGTACAGCTTACTCTGGTGGCTTTGTTATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGACAAGTTACTCCTGTACAGCTTACTCTGGTGGCTTTGTTATAAA  1042

seq1  GGAAGGTTCCAGATGCAGAGACAATGAGGCTAGATCCTGCTTGTGCTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTCCAGATGCAGAGACAATGAGGCTAGATCCTGCTTGTGCTGTG  1092

seq1  TATTAACTGTGTGGTCTCAGCCAAGTCAGAGTCTCAGAGCCTCAGTTTCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTGTGTGGTCTCAGCCAAGTCAGAGTCTCAGAGCCTCAGTTTCC  1142

seq1  CCACCTGACCATGAGGATCCTGAAGTGTTGGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  CCACCTGACCATGAGGATCCTGAAGTGTTGGGAATTC  1179

seq1: chr2_92460454_92461665
seq2: B6Ng01-317L01.g_68_1126

seq1  GAATTCACTGAGGAAAGGGGCAGGGTTTTGTTTGTTTGTTTGTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGGAAAGGGGCAGGGTTTTGTTTGTTTGTTTGTTTGTTTG  50

seq1  TTTGTTTGTTTTTGTCTGTCTCTCCCTGGAAATAGCTAGCCAGCTACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTGTCTGTCTCTCCCTGGAAATAGCTAGCCAGCTACATC  100

seq1  CTCCTACTGAGACTTCCTTCTGTTACACTCCAGCAGACTGGATGTGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTGAGACTTCCTTCTGTTACACTCCAGCAGACTGGATGTGACCA  150

seq1  TACTCGGCCTGCACAGCATCCTGCTTTCTTTTCCGTGAGGGTAGCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCGGCCTGCACAGCATCCTGCTTTCTTTTCCGTGAGGGTAGCAGAAG  200

seq1  GCATTTAGAACAATCCAGAGAAGGGAGGGAATGTGTGAGCTAGGTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGAACAATCCAGAGAAGGGAGGGAATGTGTGAGCTAGGTGACAG  250

seq1  GAACCTCAAATTGAGATCTTGTCCTATTGCATCTGGCTGGACAAATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCAAATTGAGATCTTGTCCTATTGCATCTGGCTGGACAAATGAGA  300

seq1  GATCGTATCGGGACATCTATGTCCCTGCAGTAGTCTGGGGACAATGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTATCGGGACATCTATGTCCCTGCAGTAGTCTGGGGACAATGAGGG  350

seq1  GAAGCAGTATGCTTTCTTGACTAGGAAAATAGTTCAGTCAATAAAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTATGCTTTCTTGACTAGGAAAATAGTTCAGTCAATAAAGTACT  400

seq1  TGCTTTGCAAGCATGAGGACATCAGTTTGATCTCCCAAGCCTATATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCAAGCATGAGGACATCAGTTTGATCTCCCAAGCCTATATAAAA  450

seq1  GAGCCCCATGGTATGCTTGTAATCCCAGTGCTGGCAAAGACACGTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCATGGTATGCTTGTAATCCCAGTGCTGGCAAAGACACGTAAAAC  500

seq1  TGAGCCCCTGTCTCAAAAAACCAGGGTAGAGAGAAGCTGAGGAAGATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCTGTCTCAAAAAACCAGGGTAGAGAGAAGCTGAGGAAGATATC  550

seq1  TGAGGTTGACCTTTGACATCTACACATAACCTCAGACACATGTACTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGACCTTTGACATCTACACATAACCTCAGACACATGTACTCACA  600

seq1  CACACATGGACATGCATACATAAAACACATACCCTCTAAGAAGAATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGACATGCATACATAAAACACATACCCTCTAAGAAGAATGAGT  650

seq1  TCTGTAGGTAAGGCAGAATAATGGATAGCAGAATTATGGATACAGATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTAAGGCAGAATAATGGATAGCAGAATTATGGATACAGATGAG  700

seq1  CATGAGGCAGGCTAACCACATTCTCCAAATACCTCTTCTGTCTTAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCAGGCTAACCACATTCTCCAAATACCTCTTCTGTCTTAAAAAA  750

seq1  AAAAAAAAAAACCCTACTTATTCTGTTTGACCCTGAGAACGTTTATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCCTACTTATTCTGTTTGACCCTGAGAACGTTTATTAAA  800

seq1  GATC-TCATACTATCATAGCAG-AATCATCCCTCTTTTAGTAGTTATAGC  848
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATCTTCATACTATCATAGCAGAAATCATCCCTCTTTTAGTAGTTATAGC  850

seq1  TTTTTATTTATTT-ATTTATTTATTTATTTATTTATTTATTTTTGCATTA  897
       |||||||||||| ||||||||| ||||||||||| | ||||| ||||||
seq2  -TTTTATTTATTTAATTTATTTA-TTATTTATTTA-TAATTTTGGCATTA  897

seq1  T-GGTTTTGAGACTGTGTTTCTAGTTA-TACACAAGTACAACATTGTTAC  945
      | ||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  TGGGTTTTGAGACTGTG-TTCTAGTTATTACACAAGTACAACATTGTTAC  946

seq1  TTATTTCTTGTGAACAGAACCTGCCACCATTTTGAAGAGTT-CCTGGTTC  994
      |  ||||||||||||||||||||||||  |||||||||||| ||||||||
seq2  TATTTTCTTGTGAACAGAACCTGCCACATTTTTGAAGAGTTCCCTGGTTC  996

seq1  TTGTCTGTAGTAGTTTGGCT-CCTAAATGCAACTTGAAAGCCCATGTGTT  1043
      |||||||||||||||  ||| ||||||||||  | ||||||| | ||| |
seq2  TTGTCTGTAGTAGTT--GCTCCCTAAATGCACTTGGAAAGCCTA-GTG-T  1042

seq1  GGAGGCTTGGTTCCAAGGGAGGGTGCTGTTGGAAGGTCATGAAAACTTTA  1093
      ||| |||| | |||| |                                 
seq2  GGAAGCTTTGCTCCAGG---------------------------------  1059

seq1  AGAAGTAGGAAATTCTTTAGGTCATTGAGGGTTATGTCATTGAGGAGGAC  1143
                                                        
seq2  --------------------------------------------------  1059

seq1  TGTGGGACCCCAGAATTTTTCTTCACCCTTTTTTCTTCTATGGCTACAAG  1193
                                                        
seq2  --------------------------------------------------  1059

seq1  ATGAGTGGTTTGCTCCAGG  1212
                         
seq2  -------------------  1059