BAC Information

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BAC

Clone NameB6Ng01-317N24
Chromosome2 (Build37)
Map Location 165,617,002 - 165,751,441
singlet/doubletdoublet
Overlap genePrkcbp1
Upstream geneSnx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2
Downstream geneLOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N24.bB6Ng01-317N24.g
ACCGA107907GA107908
length7941,134
definitionB6Ng01-317N24.b B6Ng01-317N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,750,649 - 165,751,441)(165,617,002 - 165,618,148)
sequence
gaattcaaggctggaaatagggagactgctgtgatctagcaggggctgca
gagaagtgggcatgcccagaccaccaaggcactgctcatctctcccattc
tgtgccaggggtctaatcaggctcgtgtctgcctccctctagagaagatc
aaaggtcctatttaaaaaaattatttatttttattttatatgcattgatg
gcttgcctgcatgtacgtctatgtgagggtgtcaggtcccttggaactgg
aattacagacagttctgagccaccgtgtaggtgctgggaattcaactcgg
gtcctctggaagagcagccagggttctattaactgttgagccatctcttc
ccagcctccagaggtcctatctaaaccttctgaggcagtcccctctctag
gtggccagagagttcaagaccttaatgtggtttcccagggatggtgacac
agcagccaaggtgattggtactggggctgccacagtcgtttggctggatc
tggggctggcattgccattggaatgtagtttggtggcttgattactggcc
gtgccaggagtccctttctccagctatgccagcagctcctctccagtgcc
attctgggctttgccttgtccgaggccatgaggctcttgtctttgataat
tgcttttgtcatcccctttgatgtgagactctgcagggtcaccaagccat
ccctgctgcctcaattcctgggcctggtgtgtaatataaactttaaaata
catgtttccctaacccctcaacagagggaggggggagaggaaga
gaattctgggaaaaagttcagaagaatgtaggaaaagacacccaaggctc
ccaggacgggagagggaggctcaaattccacagcacctagtactggaccc
cagagaaggctcaacatagaagttctattcatcactaaaggctttgaggg
tcttcatcaatcaaatatgccctgaggacctcggagacctgagcggatca
ccctgtgtccccgtgaagggtgcactcattaaacatgacacacgtgggtg
accaatacaaggaggcacctgtgtaacacctcgcctagccacacctccac
ccaaatccatccaaggtacgccaaaaaatcccaaacctttgacttccccc
aacatgaccaagtgaaatacaaaaccccatgtggccaccagggggcgaca
taccagagctttgattggagcctaagagcatagaggagggcgtctctctg
gagccggaaagatccagggtctagaaatataaacaaaaagatgaaaccat
agaaccccagggaatcacaggatggctcaccactcctcccacccttagag
gtctctacctggtgatcagaccagagccagggcaggtggacggccacaca
ctgtataccagatccgaaaggccagaacaaagcattggaatggtccccca
ctcatccctgtcgccttggcttcccctacatccactacatccccagacct
acccagtaccctgctttgcaaagaaggtatatactgctcaaaaatctctt
tttacttcatgttaagtctcttccgaggcaatagtattttaccgaccatc
taatgatttgggctcttgagatacacagctacaagtgcaggcaaagagca
gtaaccatgacccttaaaatggcccaggcatcaactgttatcacataccc
cacaggaagcaagcagctgctcgagccctatggtccatcgaaacagcact
ggccacacgtgggcacttcaatcccaagttactttaaaaatagcagtcct
tggtcacatcagcacacttctagtcagtgacgtgtgcttggtgcttcagg
actcagaagagacaatttgtttactcgcaaggggcgtccatctggacctt
gaagactcccagaacaactgaaggtccatacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165750649_165751441
seq2: B6Ng01-317N24.b_49_842 (reverse)

seq1  TCTTCCTCT-CCCCCTCCCTCTGTTGAGGGGTTAGGGAAACATGTATTTT  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTCCCCCCTCCCTCTGTTGAGGGGTTAGGGAAACATGTATTTT  50

seq1  AAAGTTTATATTACACACCAGGCCCAGGAATTGAGGCAGCAGGGATGGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTATATTACACACCAGGCCCAGGAATTGAGGCAGCAGGGATGGCT  100

seq1  TGGTGACCCTGCAGAGTCTCACATCAAAGGGGATGACAAAAGCAATTATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCCTGCAGAGTCTCACATCAAAGGGGATGACAAAAGCAATTATC  150

seq1  AAAGACAAGAGCCTCATGGCCTCGGACAAGGCAAAGCCCAGAATGGCACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGAGCCTCATGGCCTCGGACAAGGCAAAGCCCAGAATGGCACT  200

seq1  GGAGAGGAGCTGCTGGCATAGCTGGAGAAAGGGACTCCTGGCACGGCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGCTGCTGGCATAGCTGGAGAAAGGGACTCCTGGCACGGCCAG  250

seq1  TAATCAAGCCACCAAACTACATTCCAATGGCAATGCCAGCCCCAGATCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGCCACCAAACTACATTCCAATGGCAATGCCAGCCCCAGATCCA  300

seq1  GCCAAACGACTGTGGCAGCCCCAGTACCAATCACCTTGGCTGCTGTGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACGACTGTGGCAGCCCCAGTACCAATCACCTTGGCTGCTGTGTCA  350

seq1  CCATCCCTGGGAAACCACATTAAGGTCTTGAACTCTCTGGCCACCTAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGGGAAACCACATTAAGGTCTTGAACTCTCTGGCCACCTAGAG  400

seq1  AGGGGACTGCCTCAGAAGGTTTAGATAGGACCTCTGGAGGCTGGGAAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTGCCTCAGAAGGTTTAGATAGGACCTCTGGAGGCTGGGAAGAG  450

seq1  ATGGCTCAACAGTTAATAGAACCCTGGCTGCTCTTCCAGAGGACCCGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAACAGTTAATAGAACCCTGGCTGCTCTTCCAGAGGACCCGAGT  500

seq1  TGAATTCCCAGCACCTACACGGTGGCTCAGAACTGTCTGTAATTCCAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCCAGCACCTACACGGTGGCTCAGAACTGTCTGTAATTCCAGTT  550

seq1  CCAAGGGACCTGACACCCTCACATAGACGTACATGCAGGCAAGCCATCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGACCTGACACCCTCACATAGACGTACATGCAGGCAAGCCATCAA  600

seq1  TGCATATAAAATAAAAATAAATAATTTTTTTAAATAGGACCTTTGATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAAAATAAAAATAAATAATTTTTTTAAATAGGACCTTTGATCTT  650

seq1  CTCTAGAGGGAGGCAGACACGAGCCTGATTAGACCCCTGGCACAGAATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGGAGGCAGACACGAGCCTGATTAGACCCCTGGCACAGAATGG  700

seq1  GAGAGATGAGCAGTGCCTTGGTGGTCTGGGCATGCCCACTTCTCTGCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGAGCAGTGCCTTGGTGGTCTGGGCATGCCCACTTCTCTGCAGC  750

seq1  CCCTGCTAGATCACAGCAGTCTCCCTATTTCCAGCCTTGAATTC  793
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTAGATCACAGCAGTCTCCCTATTTCCAGCCTTGAATTC  794

seq1: chr2_165617002_165618148
seq2: B6Ng01-317N24.g_68_1201

seq1  GAATTCTGGGAAAAAGTTCAGAAGAATGTAGGAAAAGACACCCAAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAAAAAGTTCAGAAGAATGTAGGAAAAGACACCCAAGGCTC  50

seq1  CCAGGACGGGAGAGGGAGGCTCAAATTCCACAGCACCTAGTACTGGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACGGGAGAGGGAGGCTCAAATTCCACAGCACCTAGTACTGGACCC  100

seq1  CAGAGAAGGCTCAACATAGAAGTTCTATTCATCACTAAAGGCTTTGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGGCTCAACATAGAAGTTCTATTCATCACTAAAGGCTTTGAGGG  150

seq1  TCTTCATCAATCAAATATGCCCTGAGGACCTCGGAGACCTGAGCGGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCAATCAAATATGCCCTGAGGACCTCGGAGACCTGAGCGGATCA  200

seq1  CCCTGTGTCCCCGTGAAGGGTGCACTCATTAAACATGACACACGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTCCCCGTGAAGGGTGCACTCATTAAACATGACACACGTGGGTG  250

seq1  ACCAATACAAGGAGGCACCTGTGTAACACCTCGCCTAGCCACACCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACAAGGAGGCACCTGTGTAACACCTCGCCTAGCCACACCTCCAC  300

seq1  CCAAATCCATCCAAGGTACGCCAAAAAATCCCAAACCTTTGACTTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCATCCAAGGTACGCCAAAAAATCCCAAACCTTTGACTTCCCCC  350

seq1  AACATGACCAAGTGAAATACAAAACCCCATGTGGCCACCAGGGGGCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACCAAGTGAAATACAAAACCCCATGTGGCCACCAGGGGGCGACA  400

seq1  TACCAGAGCTTTGATTGGAGCCTAAGAGCATAGAGGAGGGCGTCTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGCTTTGATTGGAGCCTAAGAGCATAGAGGAGGGCGTCTCTCTG  450

seq1  GAGCCGGAAAGATCCAGGGTCTAGAAATATAAACAAAAAGATGAAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGAAAGATCCAGGGTCTAGAAATATAAACAAAAAGATGAAACCAT  500

seq1  AGAACCCCAGGGAATCACAGGATGGCTCACCACTCCTCCCACCCTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCCAGGGAATCACAGGATGGCTCACCACTCCTCCCACCCTTAGAG  550

seq1  GTCTCTACCTGGTGATCAGACCAGAGCCAGGGCAGGTGGACGGCCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACCTGGTGATCAGACCAGAGCCAGGGCAGGTGGACGGCCACACA  600

seq1  CTGTATACCAGATCCGAAAGGCCAGAACAAAGCATTGGAATGGTCCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACCAGATCCGAAAGGCCAGAACAAAGCATTGGAATGGTCCCCCA  650

seq1  CTCATCCCTGTCGCCTTGGCTTCCCCTACATCCACTACATCCCCAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCTGTCGCCTTGGCTTCCCCTACATCCACTACATCCCCAGACCT  700

seq1  ACCCAGTACCCTGCTTTGCAAAGAAGGTATATACTGCTCAAAAATCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTACCCTGCTTTGCAAAGAAGGTATATACTGCTCAAAAATCTCTT  750

seq1  TTTACTTCATGTTAAGTCTCTTCCGAGGCAATAGTATTTTACCGACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCATGTTAAGTCTCTTCCGAGGCAATAGTATTTTACCGACCATC  800

seq1  TAATGATTTGGGCTCTTGAGATACACAGCTACAAGTGCAGGCAAAGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTGGGCTCTTGAGATACACAGCTACAAGTGCAGGCAAAGAGCA  850

seq1  GTAACCATGACCCTTAAAATGGCCCAGGCATTCAACTGTTATCACATACC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAACCATGACCCTTAAAATGGCCCAGGCA-TCAACTGTTATCACATACC  899

seq1  CCACAGGAAGCAAGCAGCTGCTCGAGCCCTATGGTCCATCGAAACAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAAGCAAGCAGCTGCTCGAGCCCTATGGTCCATCGAAACAGCAC  949

seq1  TGGCCACACGTGGCCACTTCAATCCCAAGTTACTTTAAAATAAGCAGGTC  1000
      ||||||||||||| ||||||||||||||||||||||||||  |||| |||
seq2  TGGCCACACGTGGGCACTTCAATCCCAAGTTACTTTAAAAATAGCA-GTC  998

seq1  CTTGGTCACATCAGCCACACTTCTAGTCAGTGACGTGTGGCTGGTGGCTT  1050
      |||||||||||||| ||||||||||||||||||||||||  |||| ||||
seq2  CTTGGTCACATCAG-CACACTTCTAGTCAGTGACGTGTGCTTGGT-GCTT  1046

seq1  CCAGGGCCCCAGAAGAGACATTGTTTTACCTCCGCAGGGGGGCGCCCTTC  1100
      |   || | ||||||||||| | | ||  || ||||  |||||| || ||
seq2  C--AGGACTCAGAAGAGACAATTTGTTTACT-CGCA-AGGGGCGTCCATC  1092

seq1  TGAACTTTGAGGAACCCCACAGAACAACTGAAGGTCCCACATACACA  1147
      || || |||| ||  | | |||||||||||||||||   ||||||||
seq2  TGGACCTTGAAGA--CTCCCAGAACAACTGAAGGTC---CATACACA  1134