BAC Information

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BAC

Clone NameB6Ng01-318F23
Chromosome2 (Build37)
Map Location 84,553,947 - 84,701,107
singlet/doubletdoublet
Overlap geneZdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19
Downstream geneRtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318F23.bB6Ng01-318F23.g
ACCGA108280GA108281
length956572
definitionB6Ng01-318F23.b B6Ng01-318F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,553,947 - 84,554,902)(84,700,535 - 84,701,107)
sequence
gaattccagggcagcaacagttatgtacagagatcctgtctcaaaacaac
aacaaacaattcaagatgtgtagtttgaagactttcataaggtttgatat
aagtagttcctttggagcagtgcagtggacagcacatgtattatttgtta
aaataaccaaaccttatagcacagaacactaaatttgaatatatagaaat
ggagatgtcatatagaagaatgaatacatgctatgaaggaaagatccaag
aagaagtttaaaaagagtattattacagatcgacgtaggtgcccaagtac
ctggcgatagaattcttacaaacactagatgaatttgtatgcattcatga
gcaccggacagatctgtctgatacaaagcaggctcacactgggataaaag
gatggagatctaacctaagattatcctggacaagatggcattaaccagga
agtaaacccaagaggacaaaaatggtctgcaatgtaacatgtatctattc
tacgactacttctaataactttagtcactttcttgtttctcgttttagtg
gtttcatttggccaactggttaaggaactttaaacttccccaggaataga
cggctagtgataaaatactgtcagatacattcaagccctacttgtaaaat
aaagtacaaagtactaaaagcataaaagcatggagcacctggctggtggg
gggtagggagaagcagccgatggatgggagaaagaacaggtaaccacagg
acgaagctctaaccaaaataaaggaccagtggagtgtagggcgaggggcc
tgaaccgcggagcggtaaaaggagtacagtccccggccggcagctggagc
agtggagtcatcaccggggcaggactgactacccctgggcccagaaaaca
cggaatccaccgcgcgcaggcccgccggagctgaaagaaccgcgggcccg
ggaaga
caggacatccaggactatatagagaatccctgtctcaaaagggatttggg
ggtgagacaccaagttactagaggtgactcggatttgcagtgatccacac
ttgagatgatactaggttggagtgggacttaggcaggcaagcttgggaaa
cgagatgggggacatgtgacaggtgaaggcaaaaggattacagataccct
ggatatgagtgttcagagaaaagacatcaaaggtgtctgaatggcatagc
tggggcagtgtagaaggaaggagagaagctgccttctgctgagatggctc
caggaagcattagccaaccacgtacccagagccttcccatgaggggatat
tgcatgatgtaatccatgcagaaaagtatgtcaacagtgccttgaagttg
gaatgaggagaggagggaatcaaggttgctcattgagatactacaagaaa
tctctacaagatgggtggggaggaagggcacaaccccagctccggggtca
aaacattattcagaagaaactccccattttctttagggaatgacagtata
actttgggcatctctgtgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84553947_84554902
seq2: B6Ng01-318F23.b_47_1001

seq1  GAATTCCAGGGCAGCAACAGTTATGTACAGAGATCCTGTCTCAAAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCAGCAACAGTTATGTACAGAGATCCTGTCTCAAAACAAC  50

seq1  AACAAACAATTCAAGATGTGTAGTTTGAAGACTTTCATAAGGTTTGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAATTCAAGATGTGTAGTTTGAAGACTTTCATAAGGTTTGATAT  100

seq1  AAGTAGTTCCTTTGGAGCAGTGCAGTGGACAGCACATGTATTATTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTCCTTTGGAGCAGTGCAGTGGACAGCACATGTATTATTTGTTA  150

seq1  AAATAACCAAACCTTATAGCACAGAACACTAAATTTGAATATATAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAAACCTTATAGCACAGAACACTAAATTTGAATATATAGAAAT  200

seq1  GGAGATGTCATATAGAAGAATGAATACATGCTATGAAGGAAAGATCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTCATATAGAAGAATGAATACATGCTATGAAGGAAAGATCCAAG  250

seq1  AAGAAGTTTAAAAAGAGTATTATTACAGATCGACGTAGGTGCCCAAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTAAAAAGAGTATTATTACAGATCGACGTAGGTGCCCAAGTAC  300

seq1  CTGGCGATAGAATTCTTACAAACACTAGATGAATTTGTATGCATTCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGATAGAATTCTTACAAACACTAGATGAATTTGTATGCATTCATGA  350

seq1  GCACCGGACAGATCTGTCTGATACAAAGCAGGCTCACACTGGGATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGGACAGATCTGTCTGATACAAAGCAGGCTCACACTGGGATAAAAG  400

seq1  GATGGAGATCTAACCTAAGATTATCCTGGACAAGATGGCATTAACCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATCTAACCTAAGATTATCCTGGACAAGATGGCATTAACCAGGA  450

seq1  AGTAAACCCAAGAGGACAAAAATGGTCTGCAATGTAACATGTATCTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCCAAGAGGACAAAAATGGTCTGCAATGTAACATGTATCTATTC  500

seq1  TACGACTACTTCTAATAACTTTAGTCACTTTCTTGTTTCTCGTTTTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACTACTTCTAATAACTTTAGTCACTTTCTTGTTTCTCGTTTTAGTG  550

seq1  GTTTCATTTGGCCAACTGGTTAAGGAACTTTAAACTTCCCCAGGAATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTGGCCAACTGGTTAAGGAACTTTAAACTTCCCCAGGAATAGA  600

seq1  CGGCTAGTGATAAAATACTGTCAGATACATTCAAGCCCTACTTGTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAGTGATAAAATACTGTCAGATACATTCAAGCCCTACTTGTAAAAT  650

seq1  AAAGTACAAAGTACTAAAAGCATAAAAGCATGGAGCACCTGGCTGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAAAGTACTAAAAGCATAAAAGCATGGAGCACCTGGCTGGTGGG  700

seq1  GGGTAGGGAGAAGCAGCCGATGGATGGGAGAAAGAACAGGTAACCACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGAGAAGCAGCCGATGGATGGGAGAAAGAACAGGTAACCACAGG  750

seq1  ACGAAGCTCTAACCAAAAT-AAGGACCAGTGGAGTGTAGGGCGAGGGGCC  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACGAAGCTCTAACCAAAATAAAGGACCAGTGGAGTGTAGGGCGAGGGGCC  800

seq1  TGAACCGCGGAGCGGTAAAAGGAGTACAGTCCCCGGCCGGCAGCTGGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCGCGGAGCGGTAAAAGGAGTACAGTCCCCGGCCGGCAGCTGGAGC  850

seq1  AGTGGGAGTCATCACCGGGGGCAGGACTGACTACCCCT-GGCCCAGAAAA  898
      ||| |||||||||||| ||||||||||||||||||||| |||||||||||
seq2  AGT-GGAGTCATCACC-GGGGCAGGACTGACTACCCCTGGGCCCAGAAAA  898

seq1  CACGGAATCCACCGCGCGCAGGGCCCGCCGGAGCTGAGAGAACCGCGGGC  948
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  CACGGAATCCACCGCGCGCA-GGCCCGCCGGAGCTGAAAGAACCGCGGGC  947

seq1  CGGGGAAG  956
      | ||||||
seq2  CCGGGAAG  955

seq1: chr2_84700535_84701107
seq2: B6Ng01-318F23.g_63_639 (reverse)

seq1  ATTCACAGAGATG-CCAAAGTTATAATGTC-TTTCCTAAAGAAAAT-GGG  47
      ||||||||||||| ||||||||||| |||| || |||||||||||| |||
seq2  ATTCACAGAGATGCCCAAAGTTATACTGTCATTCCCTAAAGAAAATGGGG  50

seq1  AGTCTCTTCTGATGAATGTTTTGACCCCGGAGCT-GGGTTGTGCCCTTCC  96
      ||| ||||||||  |||||||||||||||||||| |||||||||||||||
seq2  AGTTTCTTCTGAATAATGTTTTGACCCCGGAGCTGGGGTTGTGCCCTTCC  100

seq1  TCCCCACCCATCTTGTAGAGATTTCTTGTAGTATCTCAATGAGCAACCTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCATCTTGTAGAGATTTCTTGTAGTATCTCAATGAGCAACCTT  150

seq1  GATTCCCTCCTCTCCTCATTCCAACTTCAAGGCACTGTTGACATACTTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCCTCTCCTCATTCCAACTTCAAGGCACTGTTGACATACTTTT  200

seq1  CTGCATGGATTACATCATGCAATATCCCCTCATGGGAAGGCTCTGGGTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGATTACATCATGCAATATCCCCTCATGGGAAGGCTCTGGGTAC  250

seq1  GTGGTTGGCTAATGCTTCCTGGAGCCATCTCAGCAGAAGGCAGCTTCTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGCTAATGCTTCCTGGAGCCATCTCAGCAGAAGGCAGCTTCTCT  300

seq1  CCTTCCTTCTACACTGCCCCAGCTATGCCATTCAGACACCTTTGATGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCTACACTGCCCCAGCTATGCCATTCAGACACCTTTGATGTCT  350

seq1  TTTCTCTGAACACTCATATCCAGGGTATCTGTAATCCTTTTGCCTTCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAACACTCATATCCAGGGTATCTGTAATCCTTTTGCCTTCACC  400

seq1  TGTCACATGTCCCCCATCTCGTTTCCCAAGCTTGCCTGCCTAAGTCCCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATGTCCCCCATCTCGTTTCCCAAGCTTGCCTGCCTAAGTCCCAC  450

seq1  TCCAACCTAGTATCATCTCAAGTGTGGATCACTGCAAATCCGAGTCACCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTAGTATCATCTCAAGTGTGGATCACTGCAAATCCGAGTCACCT  500

seq1  CTAGTAACTTGGTGTCTCACCCCCAAATCCCTTTTGAGACAGGGATTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAACTTGGTGTCTCACCCCCAAATCCCTTTTGAGACAGGGATTCTC  550

seq1  TATATAGTCCTGGATGTCCTGGAATTC  573
      |||||||||||||||||||||||||||
seq2  TATATAGTCCTGGATGTCCTGGAATTC  577