BAC Information

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BAC

Clone NameB6Ng01-318K16
Chromosome2 (Build37)
Map Location 44,369,994 - 44,547,397
singlet/doubletdoublet
Overlap geneGtdc1
Upstream geneLOC100041245, Kynu, Arhgap15
Downstream geneZeb2, LOC100042661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318K16.bB6Ng01-318K16.g
ACCGA108494GA108495
length1151,099
definitionB6Ng01-318K16.b B6Ng01-318K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,369,994 - 44,370,108)(44,546,295 - 44,547,397)
sequence
agctacatagaagagtctacaaaagtcctacaaggagcattaatagataa
gtgtctctcaggctaaggagtgtggtgtggagtctacgtatgtgtattga
ggggggggtatgggg

gaattcatacttatgagggcaccatctaaagtgcaataacttcaaggttc
taagatgttagtaaaataatattattttaagggctcaataaaatcatttt
tcaataataatttaccaaaaagtttcttaattgttattaaaatgaaaaga
cttgatgtttttatttttggaaagaaataagcttatgtttataaacattt
caaaagttgtgaaatgataattgttaatttgtttctgtttatgtgcttgg
acatttaataatatttctagagtcaagcccacaatatttttgaaagctta
attttcaataattttcttttcttaaagacaagtcatacaatttaggcatg
cagagatatttgtttgcaagtggtataaaaattataggctagcaaaatag
ctcctgcctaccagaagagattacaaattgtggttgtggagaatagtatg
atcctgagactatgtggatctgactaatagtggcttcagccttgtgtttg
actgagaagcataaaatagattatgcttcagctatataagctaaggacct
ataaaaccaattactcaacctaggtttttttggtgttttatttttgtttt
gttttgtattccccaaagaaaaaatatcatctggatcagaaagttagatg
acattattttagtatttcttgggagctggtaataaaatgtagaaactaaa
atgaaaagatacagagtggtgaacaaaagttatattctggtgatagaaac
tgaaaatgaattaaaatgatttcagatgttctaaagaggtataaaagaaa
tagggtaatgagaagtcaatggtacaaggtacatcttctatgagatactg
tttagctgatactaaatgacaagaaagagcaaataatagagagaagagta
ttcctggcagaaacagtaaggaacgatccattctaagaatgggaaaaaag
ccaggtaagaacagtagaggccagctggtgagttgaaccacatcttgtta
taatggcgagtctggattcagtccacctttactgcagcaccactgaagtt
gacgagagtggagaaatgagtcatacctggtggataataatgcagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44369994_44370108
seq2: B6Ng01-318K16.b_51_165

seq1  AGCTACATAGAAGAGTCTACAAAAGTCCTACAAGGAGCATTAATAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATAGAAGAGTCTACAAAAGTCCTACAAGGAGCATTAATAGATAA  50

seq1  GTGTCTCTCAGGCTAAGGAGTGTGGTGTGGAGTCTACGTATGTGTATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTCAGGCTAAGGAGTGTGGTGTGGAGTCTACGTATGTGTATTGA  100

seq1  GGGGGGGGTATGGGG  115
      |||||||||||||||
seq2  GGGGGGGGTATGGGG  115


seq1: chr2_44546295_44547397
seq2: B6Ng01-318K16.g_67_1165 (reverse)

seq1  AAGTCTTCCATTATTAATCCACCAGTTAATGAACTCATTTTCTCACTCTC  50
      ||||| | ||||||| ||||||||| | ||| ||||||||   |||||||
seq2  AAGTC-TGCATTATT-ATCCACCAGGT-ATG-ACTCATTTCTCCACTCTC  46

seq1  GTCAACCTTCAGT-GTGCTTCCAGTAAAGGTGGACTGAATCCAGACTCGC  99
      ||||| ||||||| |||| | |||||||||||||||||||||||||||||
seq2  GTCAA-CTTCAGTGGTGC-TGCAGTAAAGGTGGACTGAATCCAGACTCGC  94

seq1  CATTATAACAAAGATGT-GTTCAACTCACCAGCTGGCCTCTACTGTTCTT  148
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CATTATAAC-AAGATGTGGTTCAACTCACCAGCTGGCCTCTACTGTTCTT  143

seq1  ACCTGGCTTTTTT-CCATTCTTAGAATGGATCGTTCCTTACTGTTTCTGC  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTTTTTTCCCATTCTTAGAATGGATCGTTCCTTACTGTTTCTGC  193

seq1  CAGGAATACTCTTCTCTCTATTATTTGCTCTTTCTTGTCATTTAGTATCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATACTCTTCTCTCTATTATTTGCTCTTTCTTGTCATTTAGTATCA  243

seq1  GCTAAACAGTATCTCATAGAAGATGTACCTTGTACCATTGACTTCTCATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACAGTATCTCATAGAAGATGTACCTTGTACCATTGACTTCTCATT  293

seq1  ACCCTATTTCTTTTATACCTCTTTAGAACATCTGAAATCATTTTAATTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATTTCTTTTATACCTCTTTAGAACATCTGAAATCATTTTAATTCA  343

seq1  TTTTCAGTTTCTATCACCAGAATATAACTTTTGTTCACCACTCTGTATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTTCTATCACCAGAATATAACTTTTGTTCACCACTCTGTATCT  393

seq1  TTTCATTTTAGTTTCTACATTTTATTACCAGCTCCCAAGAAATACTAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTAGTTTCTACATTTTATTACCAGCTCCCAAGAAATACTAAAA  443

seq1  TAATGTCATCTAACTTTCTGATCCAGATGATATTTTTTCTTTGGGGAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCATCTAACTTTCTGATCCAGATGATATTTTTTCTTTGGGGAATA  493

seq1  CAAAACAAAACAAAAATAAAACACCAAAAAAACCTAGGTTGAGTAATTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAAATAAAACACCAAAAAAACCTAGGTTGAGTAATTGG  543

seq1  TTTTATAGGTCCTTAGCTTATATAGCTGAAGCATAATCTATTTTATGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGGTCCTTAGCTTATATAGCTGAAGCATAATCTATTTTATGCTT  593

seq1  CTCAGTCAAACACAAGGCTGAAGCCACTATTAGTCAGATCCACATAGTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAAACACAAGGCTGAAGCCACTATTAGTCAGATCCACATAGTCT  643

seq1  CAGGATCATACTATTCTCCACAACCACAATTTGTAATCTCTTCTGGTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCATACTATTCTCCACAACCACAATTTGTAATCTCTTCTGGTAGG  693

seq1  CAGGAGCTATTTTGCTAGCCTATAATTTTTATACCACTTGCAAACAAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTATTTTGCTAGCCTATAATTTTTATACCACTTGCAAACAAATA  743

seq1  TCTCTGCATGCCTAAATTGTATGACTTGTCTTTAAGAAAAGAAAATTATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATGCCTAAATTGTATGACTTGTCTTTAAGAAAAGAAAATTATT  793

seq1  GAAAATTAAGCTTTCAAAAATATTGTGGGCTTGACTCTAGAAATATTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAGCTTTCAAAAATATTGTGGGCTTGACTCTAGAAATATTATT  843

seq1  AAATGTCCAAGCACATAAACAGAAACAAATTAACAATTATCATTTCACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCAAGCACATAAACAGAAACAAATTAACAATTATCATTTCACAA  893

seq1  CTTTTGAAATGTTTATAAACATAAGCTTATTTCTTTCCAAAAATAAAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAATGTTTATAAACATAAGCTTATTTCTTTCCAAAAATAAAAAC  943

seq1  ATCAAGTCTTTTCATTTTAATAACAATTAAGAAACTTTTTGGTAAATTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTTTTCATTTTAATAACAATTAAGAAACTTTTTGGTAAATTAT  993

seq1  TATTGAAAAATGATTTTATTGAGCCCTTAAAATAATATTATTTTACTAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAATGATTTTATTGAGCCCTTAAAATAATATTATTTTACTAAC  1043

seq1  ATCTTAGAACCTTGAAGTTATTGCACTTTAGATGGTGCCCTCATAAGTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAACCTTGAAGTTATTGCACTTTAGATGGTGCCCTCATAAGTAT  1093

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1099


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